HEADER PROTEIN FIBRIL 24-MAY-07 2Q1E TITLE ALTERED DIMER INTERFACE DECREASES STABILITY IN AN AMYLOIDOGENIC KAPPA1 TITLE 2 BENCE JONES PROTEIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOIDOGENIC IMMUNOGLOBULIN LIGHT CHAIN PROTEIN AL-09; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MUTANT OF VK1 O18/O8 GERMLINE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET12A KEYWDS AL, LIGHT CHAIN AMYLOIDOSIS, AMYLOID, IMMUNOGLOBULIN, LIGHT CHAIN, KEYWDS 2 LIGHT CHAIN VARIABLE DOMAIN, PROTEIN FIBRIL EXPDTA X-RAY DIFFRACTION AUTHOR J.R.THOMPSON,M.RAMIREZ-ALVARADO,E.M.BADEN REVDAT 6 03-APR-24 2Q1E 1 REMARK REVDAT 5 18-OCT-17 2Q1E 1 REMARK REVDAT 4 24-FEB-09 2Q1E 1 VERSN REVDAT 3 17-JUN-08 2Q1E 1 JRNL REVDAT 2 22-APR-08 2Q1E 1 JRNL REVDAT 1 08-APR-08 2Q1E 0 JRNL AUTH E.M.BADEN,B.A.OWEN,F.C.PETERSON,B.F.VOLKMAN, JRNL AUTH 2 M.RAMIREZ-ALVARADO,J.R.THOMPSON JRNL TITL ALTERED DIMER INTERFACE DECREASES STABILITY IN AN JRNL TITL 2 AMYLOIDOGENIC PROTEIN. JRNL REF J.BIOL.CHEM. V. 283 15853 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18400753 JRNL DOI 10.1074/JBC.M705347200 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 29819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.700 REMARK 3 FREE R VALUE TEST SET COUNT : 529 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2094 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 443 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3582 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2341 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4898 ; 1.832 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5774 ; 1.292 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 459 ; 8.026 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;42.930 ;25.949 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 585 ;17.465 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.731 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4081 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 671 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 610 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2422 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1724 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2052 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 301 ; 0.200 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.055 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.344 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.235 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2861 ; 0.829 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 906 ; 0.172 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3689 ; 1.161 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1547 ; 2.145 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1209 ; 3.316 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000043027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0718 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29819 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 176.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 98.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 82.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 68.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47000 REMARK 200 FOR SHELL : 9.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: VK1 O18/O8 GERMLINE VARIABLE LIGHT CHAIN DOMAIN REMARK 200 MONOMER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOTHER LIQUOR: 15-30% (W/V) PEG 4K, REMARK 280 0.2 M LI2SO4, 0.1 M TRIS PH 7.9-8.9. PROTEIN: 890 MICROMOLAR IN REMARK 280 10 MM TRIS, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 88.02700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.02700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 88.02700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.02700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 88.02700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 88.02700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 88.02700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 88.02700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 88.02700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 88.02700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 88.02700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 88.02700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 88.02700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 88.02700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 88.02700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 88.02700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 88.02700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 88.02700 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 132.04050 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 44.01350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 44.01350 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 132.04050 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 132.04050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 132.04050 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.01350 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 44.01350 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 132.04050 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.01350 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 132.04050 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 44.01350 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 132.04050 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 44.01350 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 44.01350 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 44.01350 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 132.04050 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 44.01350 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 132.04050 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 132.04050 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 132.04050 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 44.01350 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 44.01350 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 132.04050 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 132.04050 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 44.01350 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 44.01350 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 44.01350 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 44.01350 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 132.04050 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 44.01350 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 132.04050 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 44.01350 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 132.04050 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 132.04050 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 132.04050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 501 LIES ON A SPECIAL POSITION. REMARK 375 O2 SO4 A 501 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 270 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 258 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 183 O HOH D 227 2.02 REMARK 500 OXT LYS A 107 O HOH A 151 2.07 REMARK 500 O PRO A 40 O HOH A 187 2.07 REMARK 500 O GLY B 57 O HOH B 132 2.08 REMARK 500 O HOH C 179 O HOH D 176 2.11 REMARK 500 O HOH D 218 O HOH D 247 2.13 REMARK 500 O HOH D 137 O HOH D 211 2.19 REMARK 500 O HOH D 214 O HOH D 271 2.19 REMARK 500 O GLN C 42 CB ALA D -1 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 117 O HOH B 151 17455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 105 CD GLU D 105 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 11 CA - CB - CG ANGL. DEV. = 19.6 DEGREES REMARK 500 ASP B 1 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU B 11 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 ASP C 1 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP C 1 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 LEU C 11 CA - CB - CG ANGL. DEV. = 20.4 DEGREES REMARK 500 LEU D 11 CA - CB - CG ANGL. DEV. = 23.8 DEGREES REMARK 500 LEU D 11 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 -130.05 54.47 REMARK 500 ASN A 30 -132.60 54.47 REMARK 500 ALA A 51 -39.98 71.13 REMARK 500 TYR A 91 31.88 -143.30 REMARK 500 LEU B 11 134.65 -174.85 REMARK 500 ASN B 30 -116.59 41.57 REMARK 500 ASN B 30 -117.46 41.57 REMARK 500 GLN B 42 149.56 172.22 REMARK 500 ALA B 51 -51.84 82.61 REMARK 500 LEU B 54 140.56 -37.65 REMARK 500 GLU B 81 -0.80 -56.26 REMARK 500 LEU B 83 108.62 -59.89 REMARK 500 TYR B 91 32.53 -143.14 REMARK 500 ASN C 30 -124.29 50.95 REMARK 500 ASN C 30 -122.56 50.95 REMARK 500 ALA C 51 -38.91 73.98 REMARK 500 SER C 67 131.75 -177.33 REMARK 500 ASN D 30 -132.26 47.47 REMARK 500 ALA D 51 -35.72 83.81 REMARK 500 SER D 52 14.55 -146.80 REMARK 500 TYR D 91 31.48 -140.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA C -1 THR C 0 127.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS NOT AVAILABLE IN THE UNIPROT DATABASE AT REMARK 999 THE TIME OF PROCESSING. DBREF 2Q1E A 1 107 UNP A2NI60 A2NI60_HUMAN 1 107 DBREF 2Q1E B 1 107 UNP A2NI60 A2NI60_HUMAN 1 107 DBREF 2Q1E C 1 107 UNP A2NI60 A2NI60_HUMAN 1 107 DBREF 2Q1E D 1 107 UNP A2NI60 A2NI60_HUMAN 1 107 SEQRES 1 A 109 ALA THR ASP ILE GLN MET THR GLN SER PRO SER SER LEU SEQRES 2 A 109 SER ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN SEQRES 3 A 109 ALA SER GLN ASP ILE ASN ASN TYR LEU ILE TRP TYR GLN SEQRES 4 A 109 GLN LYS PRO GLY GLN ALA PRO LYS LEU LEU ILE TYR ASP SEQRES 5 A 109 ALA SER THR LEU GLU THR GLY VAL PRO SER ARG PHE SER SEQRES 6 A 109 GLY SER GLY SER GLY THR GLU PHE THR PHE THR ILE SER SEQRES 7 A 109 SER LEU GLN PRO GLU ASP LEU ALA THR TYR HIS CYS GLN SEQRES 8 A 109 GLN TYR ASP ASN LEU PRO TYR THR PHE GLY GLN GLY THR SEQRES 9 A 109 LYS LEU GLU ILE LYS SEQRES 1 B 109 ALA THR ASP ILE GLN MET THR GLN SER PRO SER SER LEU SEQRES 2 B 109 SER ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN SEQRES 3 B 109 ALA SER GLN ASP ILE ASN ASN TYR LEU ILE TRP TYR GLN SEQRES 4 B 109 GLN LYS PRO GLY GLN ALA PRO LYS LEU LEU ILE TYR ASP SEQRES 5 B 109 ALA SER THR LEU GLU THR GLY VAL PRO SER ARG PHE SER SEQRES 6 B 109 GLY SER GLY SER GLY THR GLU PHE THR PHE THR ILE SER SEQRES 7 B 109 SER LEU GLN PRO GLU ASP LEU ALA THR TYR HIS CYS GLN SEQRES 8 B 109 GLN TYR ASP ASN LEU PRO TYR THR PHE GLY GLN GLY THR SEQRES 9 B 109 LYS LEU GLU ILE LYS SEQRES 1 C 109 ALA THR ASP ILE GLN MET THR GLN SER PRO SER SER LEU SEQRES 2 C 109 SER ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN SEQRES 3 C 109 ALA SER GLN ASP ILE ASN ASN TYR LEU ILE TRP TYR GLN SEQRES 4 C 109 GLN LYS PRO GLY GLN ALA PRO LYS LEU LEU ILE TYR ASP SEQRES 5 C 109 ALA SER THR LEU GLU THR GLY VAL PRO SER ARG PHE SER SEQRES 6 C 109 GLY SER GLY SER GLY THR GLU PHE THR PHE THR ILE SER SEQRES 7 C 109 SER LEU GLN PRO GLU ASP LEU ALA THR TYR HIS CYS GLN SEQRES 8 C 109 GLN TYR ASP ASN LEU PRO TYR THR PHE GLY GLN GLY THR SEQRES 9 C 109 LYS LEU GLU ILE LYS SEQRES 1 D 109 ALA THR ASP ILE GLN MET THR GLN SER PRO SER SER LEU SEQRES 2 D 109 SER ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN SEQRES 3 D 109 ALA SER GLN ASP ILE ASN ASN TYR LEU ILE TRP TYR GLN SEQRES 4 D 109 GLN LYS PRO GLY GLN ALA PRO LYS LEU LEU ILE TYR ASP SEQRES 5 D 109 ALA SER THR LEU GLU THR GLY VAL PRO SER ARG PHE SER SEQRES 6 D 109 GLY SER GLY SER GLY THR GLU PHE THR PHE THR ILE SER SEQRES 7 D 109 SER LEU GLN PRO GLU ASP LEU ALA THR TYR HIS CYS GLN SEQRES 8 D 109 GLN TYR ASP ASN LEU PRO TYR THR PHE GLY GLN GLY THR SEQRES 9 D 109 LYS LEU GLU ILE LYS HET SO4 A 501 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *443(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 GLN B 79 LEU B 83 5 5 HELIX 3 3 GLN C 79 LEU C 83 5 5 HELIX 4 4 GLN D 79 LEU D 83 5 5 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 ALA A 25 -1 O THR A 22 N SER A 7 SHEET 3 A 4 GLU A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 63 O THR A 74 SHEET 1 B 6 SER A 10 ALA A 13 0 SHEET 2 B 6 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N ILE A 34 O GLN A 89 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LYS A 45 N GLN A 37 SHEET 6 B 6 THR A 53 LEU A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 MET B 4 SER B 7 0 SHEET 2 C 4 VAL B 19 ALA B 25 -1 O THR B 22 N SER B 7 SHEET 3 C 4 GLU B 70 ILE B 75 -1 O ILE B 75 N VAL B 19 SHEET 4 C 4 PHE B 62 SER B 65 -1 N SER B 63 O THR B 74 SHEET 1 D 4 SER B 10 ALA B 13 0 SHEET 2 D 4 THR B 102 ILE B 106 1 O GLU B 105 N LEU B 11 SHEET 3 D 4 ALA B 84 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 D 4 LEU B 33 GLN B 38 -1 N ILE B 34 O GLN B 89 SHEET 1 E 2 ILE B 48 TYR B 49 0 SHEET 2 E 2 THR B 53 LEU B 54 -1 O THR B 53 N TYR B 49 SHEET 1 F 4 MET C 4 SER C 7 0 SHEET 2 F 4 VAL C 19 ALA C 25 -1 O THR C 22 N SER C 7 SHEET 3 F 4 GLU C 70 ILE C 75 -1 O PHE C 71 N CYS C 23 SHEET 4 F 4 PHE C 62 SER C 67 -1 N SER C 65 O THR C 72 SHEET 1 G 6 SER C 10 ALA C 13 0 SHEET 2 G 6 THR C 102 ILE C 106 1 O GLU C 105 N LEU C 11 SHEET 3 G 6 ALA C 84 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 G 6 LEU C 33 GLN C 38 -1 N GLN C 38 O THR C 85 SHEET 5 G 6 LYS C 45 TYR C 49 -1 O ILE C 48 N TRP C 35 SHEET 6 G 6 THR C 53 LEU C 54 -1 O THR C 53 N TYR C 49 SHEET 1 H 4 MET D 4 SER D 7 0 SHEET 2 H 4 VAL D 19 ALA D 25 -1 O THR D 22 N SER D 7 SHEET 3 H 4 GLU D 70 ILE D 75 -1 O PHE D 73 N ILE D 21 SHEET 4 H 4 PHE D 62 GLY D 66 -1 N SER D 63 O THR D 74 SHEET 1 I 6 SER D 10 ALA D 13 0 SHEET 2 I 6 THR D 102 ILE D 106 1 O GLU D 105 N LEU D 11 SHEET 3 I 6 ALA D 84 GLN D 90 -1 N ALA D 84 O LEU D 104 SHEET 4 I 6 LEU D 33 GLN D 38 -1 N TYR D 36 O HIS D 87 SHEET 5 I 6 LYS D 45 TYR D 49 -1 O LYS D 45 N GLN D 37 SHEET 6 I 6 THR D 53 LEU D 54 -1 O THR D 53 N TYR D 49 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.24 SSBOND 2 CYS B 23 CYS B 88 1555 1555 2.22 SSBOND 3 CYS C 23 CYS C 88 1555 1555 2.27 SSBOND 4 CYS D 23 CYS D 88 1555 1555 2.22 CISPEP 1 SER A 7 PRO A 8 0 -8.37 CISPEP 2 LEU A 94 PRO A 95 0 -13.15 CISPEP 3 SER B 7 PRO B 8 0 -9.60 CISPEP 4 LEU B 94 PRO B 95 0 -8.59 CISPEP 5 SER C 7 PRO C 8 0 -8.65 CISPEP 6 LEU C 94 PRO C 95 0 -7.48 CISPEP 7 SER D 7 PRO D 8 0 -13.92 CISPEP 8 LEU D 94 PRO D 95 0 -9.70 SITE 1 AC1 3 THR D 56 HOH D 128 HOH D 157 CRYST1 176.054 176.054 176.054 90.00 90.00 90.00 P 41 3 2 96 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005680 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005680 0.00000