data_2Q1M # _entry.id 2Q1M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Q1M RCSB RCSB043035 WWPDB D_1000043035 # _pdbx_database_status.entry_id 2Q1M _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-05-24 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chattopadhyay, K.' 1 'Ramagopal, U.A.' 2 'Nathenson, S.G.' 3 'Almo, S.C.' 4 # _citation.id primary _citation.title 'Assembly and structural properties of glucocorticoid-induced TNF receptor ligand: Implications for function.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 104 _citation.page_first 19452 _citation.page_last 19457 _citation.year 2007 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18040044 _citation.pdbx_database_id_DOI 10.1073/pnas.0709264104 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chattopadhyay, K.' 1 primary 'Ramagopal, U.A.' 2 primary 'Mukhopadhaya, A.' 3 primary 'Malashkevich, V.N.' 4 primary 'Dilorenzo, T.P.' 5 primary 'Brenowitz, M.' 6 primary 'Nathenson, S.G.' 7 primary 'Almo, S.C.' 8 # _cell.length_a 72.691 _cell.length_b 72.691 _cell.length_c 53.101 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2Q1M _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63' _symmetry.entry_id 2Q1M _symmetry.Int_Tables_number 173 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tumor necrosis factor ligand superfamily member 18' 14687.742 1 ? ? 'Extracellular, TNF homology domain' ? 2 water nat water 18.015 42 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Glucocorticoid-induced TNF-related ligand, hGITRL, Activation-inducible TNF-related ligand, AITRL' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIYGQVAPNANYNDVAPFEVRLYKNKDMIQTL TNKSKIQNVGGTYELHVGDTIDLIFNSEHQVLKNNTYWGIILLANPQFIS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIYGQVAPNANYNDVAPFEVRLYKNKDMIQTL TNKSKIQNVGGTYELHVGDTIDLIFNSEHQVLKNNTYWGIILLANPQFIS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLU n 1 6 THR n 1 7 ALA n 1 8 LYS n 1 9 GLU n 1 10 PRO n 1 11 CYS n 1 12 MET n 1 13 ALA n 1 14 LYS n 1 15 PHE n 1 16 GLY n 1 17 PRO n 1 18 LEU n 1 19 PRO n 1 20 SER n 1 21 LYS n 1 22 TRP n 1 23 GLN n 1 24 MET n 1 25 ALA n 1 26 SER n 1 27 SER n 1 28 GLU n 1 29 PRO n 1 30 PRO n 1 31 CYS n 1 32 VAL n 1 33 ASN n 1 34 LYS n 1 35 VAL n 1 36 SER n 1 37 ASP n 1 38 TRP n 1 39 LYS n 1 40 LEU n 1 41 GLU n 1 42 ILE n 1 43 LEU n 1 44 GLN n 1 45 ASN n 1 46 GLY n 1 47 LEU n 1 48 TYR n 1 49 LEU n 1 50 ILE n 1 51 TYR n 1 52 GLY n 1 53 GLN n 1 54 VAL n 1 55 ALA n 1 56 PRO n 1 57 ASN n 1 58 ALA n 1 59 ASN n 1 60 TYR n 1 61 ASN n 1 62 ASP n 1 63 VAL n 1 64 ALA n 1 65 PRO n 1 66 PHE n 1 67 GLU n 1 68 VAL n 1 69 ARG n 1 70 LEU n 1 71 TYR n 1 72 LYS n 1 73 ASN n 1 74 LYS n 1 75 ASP n 1 76 MET n 1 77 ILE n 1 78 GLN n 1 79 THR n 1 80 LEU n 1 81 THR n 1 82 ASN n 1 83 LYS n 1 84 SER n 1 85 LYS n 1 86 ILE n 1 87 GLN n 1 88 ASN n 1 89 VAL n 1 90 GLY n 1 91 GLY n 1 92 THR n 1 93 TYR n 1 94 GLU n 1 95 LEU n 1 96 HIS n 1 97 VAL n 1 98 GLY n 1 99 ASP n 1 100 THR n 1 101 ILE n 1 102 ASP n 1 103 LEU n 1 104 ILE n 1 105 PHE n 1 106 ASN n 1 107 SER n 1 108 GLU n 1 109 HIS n 1 110 GLN n 1 111 VAL n 1 112 LEU n 1 113 LYS n 1 114 ASN n 1 115 ASN n 1 116 THR n 1 117 TYR n 1 118 TRP n 1 119 GLY n 1 120 ILE n 1 121 ILE n 1 122 LEU n 1 123 LEU n 1 124 ALA n 1 125 ASN n 1 126 PRO n 1 127 GLN n 1 128 PHE n 1 129 ILE n 1 130 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'TNFSF18, AITRL, GITRL, TL6' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta (DE3) pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-14b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TNF18_HUMAN _struct_ref.pdbx_db_accession Q9UNG2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIYGQVAPNANYNDVAPFEVRLYKNKDMIQTLTNKS KIQNVGGTYELHVGDTIDLIFNSEHQVLKNNTYWGIILLANPQFIS ; _struct_ref.pdbx_align_begin 52 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Q1M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UNG2 _struct_ref_seq.db_align_beg 52 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 177 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 52 _struct_ref_seq.pdbx_auth_seq_align_end 177 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Q1M GLY A 1 ? UNP Q9UNG2 ? ? 'EXPRESSION TAG' 48 1 1 2Q1M SER A 2 ? UNP Q9UNG2 ? ? 'EXPRESSION TAG' 49 2 1 2Q1M HIS A 3 ? UNP Q9UNG2 ? ? 'EXPRESSION TAG' 50 3 1 2Q1M MET A 4 ? UNP Q9UNG2 ? ? 'EXPRESSION TAG' 51 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2Q1M _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_percent_sol 55.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '25% PEG 3350, 0.1 M Sodium Acetate pH 4.5, Vapor diffusion, Sitting drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4' 2006-04-08 ? 2 CCD 'ADSC QUANTUM 315' 2006-04-16 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' ? 1 M x-ray 2 'SINGLE WAVELENGTH' ? 1 M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 1.009 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'NSLS BEAMLINE X4A' 0.9795 ? NSLS X4A 2 SYNCHROTRON 'NSLS BEAMLINE X29A' 1.009 ? NSLS X29A # _reflns.entry_id 2Q1M _reflns.d_resolution_high 2.300 _reflns.d_resolution_low 21.7 _reflns.number_obs 7131 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_netI_over_sigmaI 10.500 _reflns.pdbx_chi_squared 1.296 _reflns.pdbx_redundancy 10.800 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 7131 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.029 _reflns_shell.pdbx_redundancy 10.80 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 693 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2Q1M _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 21.7 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.410 _refine.ls_number_reflns_obs 7117 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free 0.257 _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 331 _refine.B_iso_mean 44.570 _refine.aniso_B[1][1] 0.640 _refine.aniso_B[2][2] 0.640 _refine.aniso_B[3][3] -0.960 _refine.aniso_B[1][2] 0.320 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.pdbx_overall_ESU_R 0.299 _refine.pdbx_overall_ESU_R_Free 0.230 _refine.overall_SU_ML 0.164 _refine.overall_SU_B 6.671 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 7117 _refine.ls_R_factor_all 0.217 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 947 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 989 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 21.7 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 974 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1331 1.431 1.950 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 121 7.327 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 46 37.981 26.522 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 167 17.099 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 1 18.478 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 145 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 748 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 402 0.200 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 643 0.311 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 51 0.134 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 29 0.249 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 6 0.173 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 615 0.899 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 968 1.539 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 424 1.635 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 362 2.444 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.304 _refine_ls_shell.d_res_low 2.363 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.050 _refine_ls_shell.number_reflns_R_work 465 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.320 _refine_ls_shell.R_factor_R_free 0.407 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 17 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 482 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2Q1M _struct.title 'Crystal Structure of human GITRL' _struct.pdbx_descriptor 'Tumor necrosis factor ligand superfamily member 18' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Q1M _struct_keywords.text 'GITRL; Glucocorticoid-Induced TNF Receptor Ligand, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'The biological unit is a trimer' # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 11 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 31 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 58 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 78 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.025 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 16 A . ? GLY 63 A PRO 17 A ? PRO 64 A 1 -2.15 2 LEU 18 A . ? LEU 65 A PRO 19 A ? PRO 66 A 1 4.77 3 GLU 28 A . ? GLU 75 A PRO 29 A ? PRO 76 A 1 -0.54 4 GLU 28 A . ? GLU 75 A PRO 29 A ? PRO 76 A 1 -2.66 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 22 ? ALA A 25 ? TRP A 69 ALA A 72 A 2 MET A 12 ? PHE A 15 ? MET A 59 PHE A 62 A 3 TYR A 117 ? ALA A 124 ? TYR A 164 ALA A 171 A 4 GLY A 46 ? VAL A 54 ? GLY A 93 VAL A 101 A 5 GLN A 87 ? ASN A 88 ? GLN A 134 ASN A 135 B 1 TRP A 22 ? ALA A 25 ? TRP A 69 ALA A 72 B 2 MET A 12 ? PHE A 15 ? MET A 59 PHE A 62 B 3 TYR A 117 ? ALA A 124 ? TYR A 164 ALA A 171 B 4 GLY A 46 ? VAL A 54 ? GLY A 93 VAL A 101 B 5 GLY A 91 ? LEU A 95 ? GLY A 138 LEU A 142 C 1 VAL A 32 ? SER A 36 ? VAL A 79 SER A 83 C 2 LYS A 39 ? ILE A 42 ? LYS A 86 ILE A 89 C 3 THR A 100 ? PHE A 105 ? THR A 147 PHE A 152 C 4 VAL A 68 ? LYS A 72 ? VAL A 115 LYS A 119 C 5 ASP A 75 ? LEU A 80 ? ASP A 122 LEU A 127 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 23 ? O GLN A 70 N LYS A 14 ? N LYS A 61 A 2 3 N PHE A 15 ? N PHE A 62 O TRP A 118 ? O TRP A 165 A 3 4 O LEU A 123 ? O LEU A 170 N LEU A 47 ? N LEU A 94 A 4 5 N VAL A 54 ? N VAL A 101 O GLN A 87 ? O GLN A 134 B 1 2 O GLN A 23 ? O GLN A 70 N LYS A 14 ? N LYS A 61 B 2 3 N PHE A 15 ? N PHE A 62 O TRP A 118 ? O TRP A 165 B 3 4 O LEU A 123 ? O LEU A 170 N LEU A 47 ? N LEU A 94 B 4 5 N ILE A 50 ? N ILE A 97 O GLY A 91 ? O GLY A 138 C 1 2 N SER A 36 ? N SER A 83 O LYS A 39 ? O LYS A 86 C 2 3 N LEU A 40 ? N LEU A 87 O ILE A 101 ? O ILE A 148 C 3 4 O ASP A 102 ? O ASP A 149 N TYR A 71 ? N TYR A 118 C 4 5 N LEU A 70 ? N LEU A 117 O ILE A 77 ? O ILE A 124 # _atom_sites.entry_id 2Q1M _atom_sites.fract_transf_matrix[1][1] 0.013757 _atom_sites.fract_transf_matrix[1][2] 0.007943 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015885 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018832 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 48 ? ? ? A . n A 1 2 SER 2 49 ? ? ? A . n A 1 3 HIS 3 50 ? ? ? A . n A 1 4 MET 4 51 ? ? ? A . n A 1 5 GLU 5 52 ? ? ? A . n A 1 6 THR 6 53 ? ? ? A . n A 1 7 ALA 7 54 ? ? ? A . n A 1 8 LYS 8 55 ? ? ? A . n A 1 9 GLU 9 56 ? ? ? A . n A 1 10 PRO 10 57 57 PRO PRO A . n A 1 11 CYS 11 58 58 CYS CYS A . n A 1 12 MET 12 59 59 MET MET A . n A 1 13 ALA 13 60 60 ALA ALA A . n A 1 14 LYS 14 61 61 LYS LYS A . n A 1 15 PHE 15 62 62 PHE PHE A . n A 1 16 GLY 16 63 63 GLY GLY A . n A 1 17 PRO 17 64 64 PRO PRO A . n A 1 18 LEU 18 65 65 LEU LEU A . n A 1 19 PRO 19 66 66 PRO PRO A . n A 1 20 SER 20 67 67 SER SER A . n A 1 21 LYS 21 68 68 LYS LYS A . n A 1 22 TRP 22 69 69 TRP TRP A . n A 1 23 GLN 23 70 70 GLN GLN A . n A 1 24 MET 24 71 71 MET MET A . n A 1 25 ALA 25 72 72 ALA ALA A . n A 1 26 SER 26 73 73 SER SER A . n A 1 27 SER 27 74 74 SER SER A . n A 1 28 GLU 28 75 75 GLU GLU A . n A 1 29 PRO 29 76 76 PRO PRO A . n A 1 30 PRO 30 77 77 PRO PRO A . n A 1 31 CYS 31 78 78 CYS CYS A . n A 1 32 VAL 32 79 79 VAL VAL A . n A 1 33 ASN 33 80 80 ASN ASN A . n A 1 34 LYS 34 81 81 LYS LYS A . n A 1 35 VAL 35 82 82 VAL VAL A . n A 1 36 SER 36 83 83 SER SER A . n A 1 37 ASP 37 84 84 ASP ASP A . n A 1 38 TRP 38 85 85 TRP TRP A . n A 1 39 LYS 39 86 86 LYS LYS A . n A 1 40 LEU 40 87 87 LEU LEU A . n A 1 41 GLU 41 88 88 GLU GLU A . n A 1 42 ILE 42 89 89 ILE ILE A . n A 1 43 LEU 43 90 90 LEU LEU A . n A 1 44 GLN 44 91 91 GLN GLN A . n A 1 45 ASN 45 92 92 ASN ASN A . n A 1 46 GLY 46 93 93 GLY GLY A . n A 1 47 LEU 47 94 94 LEU LEU A . n A 1 48 TYR 48 95 95 TYR TYR A . n A 1 49 LEU 49 96 96 LEU LEU A . n A 1 50 ILE 50 97 97 ILE ILE A . n A 1 51 TYR 51 98 98 TYR TYR A . n A 1 52 GLY 52 99 99 GLY GLY A . n A 1 53 GLN 53 100 100 GLN GLN A . n A 1 54 VAL 54 101 101 VAL VAL A . n A 1 55 ALA 55 102 102 ALA ALA A . n A 1 56 PRO 56 103 103 PRO PRO A . n A 1 57 ASN 57 104 104 ASN ASN A . n A 1 58 ALA 58 105 105 ALA ALA A . n A 1 59 ASN 59 106 106 ASN ASN A . n A 1 60 TYR 60 107 107 TYR TYR A . n A 1 61 ASN 61 108 108 ASN ASN A . n A 1 62 ASP 62 109 109 ASP ASP A . n A 1 63 VAL 63 110 110 VAL VAL A . n A 1 64 ALA 64 111 111 ALA ALA A . n A 1 65 PRO 65 112 112 PRO PRO A . n A 1 66 PHE 66 113 113 PHE PHE A . n A 1 67 GLU 67 114 114 GLU GLU A . n A 1 68 VAL 68 115 115 VAL VAL A . n A 1 69 ARG 69 116 116 ARG ARG A . n A 1 70 LEU 70 117 117 LEU LEU A . n A 1 71 TYR 71 118 118 TYR TYR A . n A 1 72 LYS 72 119 119 LYS LYS A . n A 1 73 ASN 73 120 120 ASN ASN A . n A 1 74 LYS 74 121 121 LYS LYS A . n A 1 75 ASP 75 122 122 ASP ASP A . n A 1 76 MET 76 123 123 MET MET A . n A 1 77 ILE 77 124 124 ILE ILE A . n A 1 78 GLN 78 125 125 GLN GLN A . n A 1 79 THR 79 126 126 THR THR A . n A 1 80 LEU 80 127 127 LEU LEU A . n A 1 81 THR 81 128 128 THR THR A . n A 1 82 ASN 82 129 129 ASN ASN A . n A 1 83 LYS 83 130 130 LYS LYS A . n A 1 84 SER 84 131 131 SER SER A . n A 1 85 LYS 85 132 132 LYS LYS A . n A 1 86 ILE 86 133 133 ILE ILE A . n A 1 87 GLN 87 134 134 GLN GLN A . n A 1 88 ASN 88 135 135 ASN ASN A . n A 1 89 VAL 89 136 136 VAL VAL A . n A 1 90 GLY 90 137 137 GLY GLY A . n A 1 91 GLY 91 138 138 GLY GLY A . n A 1 92 THR 92 139 139 THR THR A . n A 1 93 TYR 93 140 140 TYR TYR A . n A 1 94 GLU 94 141 141 GLU GLU A . n A 1 95 LEU 95 142 142 LEU LEU A . n A 1 96 HIS 96 143 143 HIS HIS A . n A 1 97 VAL 97 144 144 VAL VAL A . n A 1 98 GLY 98 145 145 GLY GLY A . n A 1 99 ASP 99 146 146 ASP ASP A . n A 1 100 THR 100 147 147 THR THR A . n A 1 101 ILE 101 148 148 ILE ILE A . n A 1 102 ASP 102 149 149 ASP ASP A . n A 1 103 LEU 103 150 150 LEU LEU A . n A 1 104 ILE 104 151 151 ILE ILE A . n A 1 105 PHE 105 152 152 PHE PHE A . n A 1 106 ASN 106 153 153 ASN ASN A . n A 1 107 SER 107 154 154 SER SER A . n A 1 108 GLU 108 155 155 GLU GLU A . n A 1 109 HIS 109 156 156 HIS HIS A . n A 1 110 GLN 110 157 157 GLN GLN A . n A 1 111 VAL 111 158 158 VAL VAL A . n A 1 112 LEU 112 159 159 LEU LEU A . n A 1 113 LYS 113 160 160 LYS LYS A . n A 1 114 ASN 114 161 161 ASN ASN A . n A 1 115 ASN 115 162 162 ASN ASN A . n A 1 116 THR 116 163 163 THR THR A . n A 1 117 TYR 117 164 164 TYR TYR A . n A 1 118 TRP 118 165 165 TRP TRP A . n A 1 119 GLY 119 166 166 GLY GLY A . n A 1 120 ILE 120 167 167 ILE ILE A . n A 1 121 ILE 121 168 168 ILE ILE A . n A 1 122 LEU 122 169 169 LEU LEU A . n A 1 123 LEU 123 170 170 LEU LEU A . n A 1 124 ALA 124 171 171 ALA ALA A . n A 1 125 ASN 125 172 172 ASN ASN A . n A 1 126 PRO 126 173 ? ? ? A . n A 1 127 GLN 127 174 ? ? ? A . n A 1 128 PHE 128 175 ? ? ? A . n A 1 129 ILE 129 176 ? ? ? A . n A 1 130 SER 130 177 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 178 1 HOH HOH A . B 2 HOH 2 179 2 HOH HOH A . B 2 HOH 3 180 3 HOH HOH A . B 2 HOH 4 181 4 HOH HOH A . B 2 HOH 5 182 5 HOH HOH A . B 2 HOH 6 183 6 HOH HOH A . B 2 HOH 7 184 7 HOH HOH A . B 2 HOH 8 185 8 HOH HOH A . B 2 HOH 9 186 10 HOH HOH A . B 2 HOH 10 187 11 HOH HOH A . B 2 HOH 11 188 12 HOH HOH A . B 2 HOH 12 189 13 HOH HOH A . B 2 HOH 13 190 15 HOH HOH A . B 2 HOH 14 191 16 HOH HOH A . B 2 HOH 15 192 17 HOH HOH A . B 2 HOH 16 193 18 HOH HOH A . B 2 HOH 17 194 19 HOH HOH A . B 2 HOH 18 195 20 HOH HOH A . B 2 HOH 19 196 21 HOH HOH A . B 2 HOH 20 197 22 HOH HOH A . B 2 HOH 21 198 23 HOH HOH A . B 2 HOH 22 199 24 HOH HOH A . B 2 HOH 23 200 25 HOH HOH A . B 2 HOH 24 201 26 HOH HOH A . B 2 HOH 25 202 27 HOH HOH A . B 2 HOH 26 203 28 HOH HOH A . B 2 HOH 27 204 30 HOH HOH A . B 2 HOH 28 205 31 HOH HOH A . B 2 HOH 29 206 32 HOH HOH A . B 2 HOH 30 207 37 HOH HOH A . B 2 HOH 31 208 40 HOH HOH A . B 2 HOH 32 209 50 HOH HOH A . B 2 HOH 33 210 52 HOH HOH A . B 2 HOH 34 211 54 HOH HOH A . B 2 HOH 35 212 56 HOH HOH A . B 2 HOH 36 213 57 HOH HOH A . B 2 HOH 37 214 58 HOH HOH A . B 2 HOH 38 215 62 HOH HOH A . B 2 HOH 39 216 66 HOH HOH A . B 2 HOH 40 217 71 HOH HOH A . B 2 HOH 41 218 74 HOH HOH A . B 2 HOH 42 219 79 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 72.6910000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 36.3455000000 -0.8660254038 -0.5000000000 0.0000000000 62.9522526265 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.500 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 10652 _diffrn_reflns.pdbx_Rmerge_I_obs 0.120 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.05 _diffrn_reflns.av_sigmaI_over_netI 6.10 _diffrn_reflns.pdbx_redundancy 16.90 _diffrn_reflns.pdbx_percent_possible_obs 100.00 _diffrn_reflns.number 180253 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.38 50.00 ? ? 0.080 ? 2.092 16.60 99.80 1 4.27 5.38 ? ? 0.094 ? 1.970 16.50 99.90 1 3.73 4.27 ? ? 0.107 ? 1.850 16.90 100.00 1 3.39 3.73 ? ? 0.119 ? 1.380 17.10 100.00 1 3.15 3.39 ? ? 0.169 ? 0.888 17.00 100.00 1 2.96 3.15 ? ? 0.237 ? 0.645 17.10 100.00 1 2.82 2.96 ? ? 0.343 ? 0.515 17.20 100.00 1 2.69 2.82 ? ? 0.519 ? 0.436 17.10 100.00 1 2.59 2.69 ? ? 0.679 ? 0.411 17.00 100.00 1 2.50 2.59 ? ? ? ? 0.373 16.70 100.00 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 SHELXE . ? ? ? ? 'model building' ? ? ? 8 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 68 ? ? -105.78 -125.69 2 1 ASN A 106 ? ? -89.95 35.61 3 1 ASN A 120 ? ? 57.48 -123.92 4 1 ASN A 162 ? ? -140.60 25.00 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 48 ? A GLY 1 2 1 Y 1 A SER 49 ? A SER 2 3 1 Y 1 A HIS 50 ? A HIS 3 4 1 Y 1 A MET 51 ? A MET 4 5 1 Y 1 A GLU 52 ? A GLU 5 6 1 Y 1 A THR 53 ? A THR 6 7 1 Y 1 A ALA 54 ? A ALA 7 8 1 Y 1 A LYS 55 ? A LYS 8 9 1 Y 1 A GLU 56 ? A GLU 9 10 1 Y 1 A PRO 173 ? A PRO 126 11 1 Y 1 A GLN 174 ? A GLN 127 12 1 Y 1 A PHE 175 ? A PHE 128 13 1 Y 1 A ILE 176 ? A ILE 129 14 1 Y 1 A SER 177 ? A SER 130 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #