data_2Q1O # _entry.id 2Q1O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Q1O pdb_00002q1o 10.2210/pdb2q1o/pdb NDB AR0080 ? ? RCSB RCSB043037 ? ? WWPDB D_1000043037 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq.db_align_beg' 5 3 'Structure model' '_struct_ref_seq.db_align_end' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Q1O _pdbx_database_status.recvd_initial_deposition_date 2007-05-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, F.' 1 'Pallan, P.S.' 2 # _citation.id primary _citation.title ;Crystal structure, stability and in vitro RNAi activity of oligoribonucleotides containing the ribo-difluorotoluyl nucleotide: insights into substrate requirements by the human RISC Ago2 enzyme. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 6424 _citation.page_last 6438 _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17881374 _citation.pdbx_database_id_DOI 10.1093/nar/gkm664 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, F.' 1 ? primary 'Pallan, P.S.' 2 ? primary 'Maier, M.A.' 3 ? primary 'Rajeev, K.G.' 4 ? primary 'Mathieu, S.L.' 5 ? primary 'Kreutz, C.' 6 ? primary 'Fan, Y.' 7 ? primary 'Sanghvi, J.' 8 ? primary 'Micura, R.' 9 ? primary 'Rozners, E.' 10 ? primary 'Manoharan, M.' 11 ? primary 'Egli, M.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*CP*GP*CP*(NF2)P*AP*AP*UP*UP*GP*GP*CP*G)-3') ; 3844.353 4 ? ? ? ? 2 water nat water 18.015 323 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CGC(NF2)AAUUGGCG' _entity_poly.pdbx_seq_one_letter_code_can CGCNAAUUGGCG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 NF2 n 1 5 A n 1 6 A n 1 7 U n 1 8 U n 1 9 G n 1 10 G n 1 11 C n 1 12 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NF2 'RNA linking' . '(1S)-1,4-ANHYDRO-1-(2,4-DIFLUORO-5-METHYLPHENYL)-5-O-PHOSPHONO-D-RIBITOL' ? 'C12 H15 F2 O7 P' 340.214 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 101 101 C C A . n A 1 2 G 2 102 102 G G A . n A 1 3 C 3 103 103 C C A . n A 1 4 NF2 4 104 104 NF2 NF2 A . n A 1 5 A 5 105 105 A A A . n A 1 6 A 6 106 106 A A A . n A 1 7 U 7 107 107 U U A . n A 1 8 U 8 108 108 U U A . n A 1 9 G 9 109 109 G G A . n A 1 10 G 10 110 110 G G A . n A 1 11 C 11 111 111 C C A . n A 1 12 G 12 112 112 G G A . n B 1 1 C 1 101 201 C C B . n B 1 2 G 2 102 202 G G B . n B 1 3 C 3 103 203 C C B . n B 1 4 NF2 4 104 204 NF2 NF2 B . n B 1 5 A 5 105 205 A A B . n B 1 6 A 6 106 206 A A B . n B 1 7 U 7 107 207 U U B . n B 1 8 U 8 108 208 U U B . n B 1 9 G 9 109 209 G G B . n B 1 10 G 10 110 210 G G B . n B 1 11 C 11 111 211 C C B . n B 1 12 G 12 112 212 G G B . n C 1 1 C 1 101 301 C C C . n C 1 2 G 2 102 302 G G C . n C 1 3 C 3 103 303 C C C . n C 1 4 NF2 4 104 304 NF2 NF2 C . n C 1 5 A 5 105 305 A A C . n C 1 6 A 6 106 306 A A C . n C 1 7 U 7 107 307 U U C . n C 1 8 U 8 108 308 U U C . n C 1 9 G 9 109 309 G G C . n C 1 10 G 10 110 310 G G C . n C 1 11 C 11 111 311 C C C . n C 1 12 G 12 112 312 G G C . n D 1 1 C 1 101 401 C C D . n D 1 2 G 2 102 402 G G D . n D 1 3 C 3 103 403 C C D . n D 1 4 NF2 4 104 404 NF2 NF2 D . n D 1 5 A 5 105 405 A A D . n D 1 6 A 6 106 406 A A D . n D 1 7 U 7 107 407 U U D . n D 1 8 U 8 108 408 U U D . n D 1 9 G 9 109 409 G G D . n D 1 10 G 10 110 410 G G D . n D 1 11 C 11 111 411 C C D . n D 1 12 G 12 112 412 G G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 1003 1003 HOH HOH A . E 2 HOH 2 1004 1004 HOH HOH A . E 2 HOH 3 1005 1005 HOH HOH A . E 2 HOH 4 1006 1006 HOH HOH A . E 2 HOH 5 1007 1007 HOH HOH A . E 2 HOH 6 1008 1008 HOH HOH A . E 2 HOH 7 1009 1009 HOH HOH A . E 2 HOH 8 1010 1010 HOH HOH A . E 2 HOH 9 1011 1011 HOH HOH A . E 2 HOH 10 1012 1012 HOH HOH A . E 2 HOH 11 1021 1021 HOH HOH A . E 2 HOH 12 1028 1028 HOH HOH A . E 2 HOH 13 1029 1029 HOH HOH A . E 2 HOH 14 1032 1032 HOH HOH A . E 2 HOH 15 1037 1037 HOH HOH A . E 2 HOH 16 1040 1040 HOH HOH A . E 2 HOH 17 1043 1043 HOH HOH A . E 2 HOH 18 1044 1044 HOH HOH A . E 2 HOH 19 1045 1045 HOH HOH A . E 2 HOH 20 1046 1046 HOH HOH A . E 2 HOH 21 1047 1047 HOH HOH A . E 2 HOH 22 1048 1048 HOH HOH A . E 2 HOH 23 1050 1050 HOH HOH A . E 2 HOH 24 1052 1052 HOH HOH A . E 2 HOH 25 1056 1056 HOH HOH A . E 2 HOH 26 1057 1057 HOH HOH A . E 2 HOH 27 1058 1058 HOH HOH A . E 2 HOH 28 1059 1059 HOH HOH A . E 2 HOH 29 1061 1061 HOH HOH A . E 2 HOH 30 1062 1062 HOH HOH A . E 2 HOH 31 1063 1063 HOH HOH A . E 2 HOH 32 1064 1064 HOH HOH A . E 2 HOH 33 1065 1065 HOH HOH A . E 2 HOH 34 1067 1067 HOH HOH A . E 2 HOH 35 1068 1068 HOH HOH A . E 2 HOH 36 1069 1069 HOH HOH A . E 2 HOH 37 1071 1071 HOH HOH A . E 2 HOH 38 1073 1073 HOH HOH A . E 2 HOH 39 1074 1074 HOH HOH A . E 2 HOH 40 1075 1075 HOH HOH A . E 2 HOH 41 1076 1076 HOH HOH A . E 2 HOH 42 1077 1077 HOH HOH A . E 2 HOH 43 1078 1078 HOH HOH A . E 2 HOH 44 1079 1079 HOH HOH A . E 2 HOH 45 1080 1080 HOH HOH A . E 2 HOH 46 1081 1081 HOH HOH A . E 2 HOH 47 1082 1082 HOH HOH A . E 2 HOH 48 1084 1084 HOH HOH A . E 2 HOH 49 1085 1085 HOH HOH A . E 2 HOH 50 1086 1086 HOH HOH A . E 2 HOH 51 1087 1087 HOH HOH A . E 2 HOH 52 1088 1088 HOH HOH A . E 2 HOH 53 1089 1089 HOH HOH A . E 2 HOH 54 1119 1119 HOH HOH A . E 2 HOH 55 1120 1120 HOH HOH A . E 2 HOH 56 1150 1150 HOH HOH A . E 2 HOH 57 1151 1151 HOH HOH A . E 2 HOH 58 1157 1157 HOH HOH A . E 2 HOH 59 1158 1158 HOH HOH A . E 2 HOH 60 1159 1159 HOH HOH A . E 2 HOH 61 1194 1194 HOH HOH A . E 2 HOH 62 1195 1195 HOH HOH A . E 2 HOH 63 1197 1197 HOH HOH A . E 2 HOH 64 1202 1202 HOH HOH A . E 2 HOH 65 1210 1210 HOH HOH A . E 2 HOH 66 1212 1212 HOH HOH A . E 2 HOH 67 1228 1228 HOH HOH A . E 2 HOH 68 1229 1229 HOH HOH A . E 2 HOH 69 1232 1232 HOH HOH A . E 2 HOH 70 1236 1236 HOH HOH A . E 2 HOH 71 1238 1238 HOH HOH A . E 2 HOH 72 1241 1241 HOH HOH A . E 2 HOH 73 1243 1243 HOH HOH A . E 2 HOH 74 1254 1254 HOH HOH A . E 2 HOH 75 1259 1259 HOH HOH A . E 2 HOH 76 1261 1261 HOH HOH A . E 2 HOH 77 1262 1262 HOH HOH A . E 2 HOH 78 1270 1270 HOH HOH A . E 2 HOH 79 1271 1271 HOH HOH A . E 2 HOH 80 1276 1276 HOH HOH A . E 2 HOH 81 1278 1278 HOH HOH A . E 2 HOH 82 1279 1279 HOH HOH A . E 2 HOH 83 1287 1287 HOH HOH A . E 2 HOH 84 1288 1288 HOH HOH A . E 2 HOH 85 1289 1289 HOH HOH A . E 2 HOH 86 1293 1293 HOH HOH A . E 2 HOH 87 1305 1305 HOH HOH A . E 2 HOH 88 1308 1308 HOH HOH A . E 2 HOH 89 1310 1310 HOH HOH A . E 2 HOH 90 1313 1313 HOH HOH A . E 2 HOH 91 1314 1314 HOH HOH A . E 2 HOH 92 1315 1315 HOH HOH A . E 2 HOH 93 1318 1318 HOH HOH A . F 2 HOH 1 1001 1001 HOH HOH B . F 2 HOH 2 1002 1002 HOH HOH B . F 2 HOH 3 1013 1013 HOH HOH B . F 2 HOH 4 1014 1014 HOH HOH B . F 2 HOH 5 1015 1015 HOH HOH B . F 2 HOH 6 1016 1016 HOH HOH B . F 2 HOH 7 1017 1017 HOH HOH B . F 2 HOH 8 1018 1018 HOH HOH B . F 2 HOH 9 1019 1019 HOH HOH B . F 2 HOH 10 1020 1020 HOH HOH B . F 2 HOH 11 1022 1022 HOH HOH B . F 2 HOH 12 1023 1023 HOH HOH B . F 2 HOH 13 1024 1024 HOH HOH B . F 2 HOH 14 1025 1025 HOH HOH B . F 2 HOH 15 1026 1026 HOH HOH B . F 2 HOH 16 1027 1027 HOH HOH B . F 2 HOH 17 1030 1030 HOH HOH B . F 2 HOH 18 1031 1031 HOH HOH B . F 2 HOH 19 1033 1033 HOH HOH B . F 2 HOH 20 1034 1034 HOH HOH B . F 2 HOH 21 1035 1035 HOH HOH B . F 2 HOH 22 1036 1036 HOH HOH B . F 2 HOH 23 1038 1038 HOH HOH B . F 2 HOH 24 1041 1041 HOH HOH B . F 2 HOH 25 1042 1042 HOH HOH B . F 2 HOH 26 1049 1049 HOH HOH B . F 2 HOH 27 1051 1051 HOH HOH B . F 2 HOH 28 1053 1053 HOH HOH B . F 2 HOH 29 1054 1054 HOH HOH B . F 2 HOH 30 1055 1055 HOH HOH B . F 2 HOH 31 1060 1060 HOH HOH B . F 2 HOH 32 1066 1066 HOH HOH B . F 2 HOH 33 1070 1070 HOH HOH B . F 2 HOH 34 1072 1072 HOH HOH B . F 2 HOH 35 1083 1083 HOH HOH B . F 2 HOH 36 1090 1090 HOH HOH B . F 2 HOH 37 1091 1091 HOH HOH B . F 2 HOH 38 1092 1092 HOH HOH B . F 2 HOH 39 1093 1093 HOH HOH B . F 2 HOH 40 1094 1094 HOH HOH B . F 2 HOH 41 1095 1095 HOH HOH B . F 2 HOH 42 1096 1096 HOH HOH B . F 2 HOH 43 1097 1097 HOH HOH B . F 2 HOH 44 1098 1098 HOH HOH B . F 2 HOH 45 1099 1099 HOH HOH B . F 2 HOH 46 1121 1121 HOH HOH B . F 2 HOH 47 1152 1152 HOH HOH B . F 2 HOH 48 1153 1153 HOH HOH B . F 2 HOH 49 1154 1154 HOH HOH B . F 2 HOH 50 1155 1155 HOH HOH B . F 2 HOH 51 1156 1156 HOH HOH B . F 2 HOH 52 1160 1160 HOH HOH B . F 2 HOH 53 1161 1161 HOH HOH B . F 2 HOH 54 1190 1190 HOH HOH B . F 2 HOH 55 1191 1191 HOH HOH B . F 2 HOH 56 1192 1192 HOH HOH B . F 2 HOH 57 1193 1193 HOH HOH B . F 2 HOH 58 1203 1203 HOH HOH B . F 2 HOH 59 1204 1204 HOH HOH B . F 2 HOH 60 1206 1206 HOH HOH B . F 2 HOH 61 1208 1208 HOH HOH B . F 2 HOH 62 1215 1215 HOH HOH B . F 2 HOH 63 1217 1217 HOH HOH B . F 2 HOH 64 1219 1219 HOH HOH B . F 2 HOH 65 1222 1222 HOH HOH B . F 2 HOH 66 1226 1226 HOH HOH B . F 2 HOH 67 1237 1237 HOH HOH B . F 2 HOH 68 1239 1239 HOH HOH B . F 2 HOH 69 1245 1245 HOH HOH B . F 2 HOH 70 1247 1247 HOH HOH B . F 2 HOH 71 1248 1248 HOH HOH B . F 2 HOH 72 1253 1253 HOH HOH B . F 2 HOH 73 1265 1265 HOH HOH B . F 2 HOH 74 1267 1267 HOH HOH B . F 2 HOH 75 1274 1274 HOH HOH B . F 2 HOH 76 1280 1280 HOH HOH B . F 2 HOH 77 1281 1281 HOH HOH B . F 2 HOH 78 1290 1290 HOH HOH B . F 2 HOH 79 1291 1291 HOH HOH B . F 2 HOH 80 1292 1292 HOH HOH B . F 2 HOH 81 1306 1306 HOH HOH B . F 2 HOH 82 1307 1307 HOH HOH B . F 2 HOH 83 1309 1309 HOH HOH B . F 2 HOH 84 1316 1316 HOH HOH B . F 2 HOH 85 1317 1317 HOH HOH B . G 2 HOH 1 1102 1102 HOH HOH C . G 2 HOH 2 1103 1103 HOH HOH C . G 2 HOH 3 1104 1104 HOH HOH C . G 2 HOH 4 1110 1110 HOH HOH C . G 2 HOH 5 1111 1111 HOH HOH C . G 2 HOH 6 1114 1114 HOH HOH C . G 2 HOH 7 1115 1115 HOH HOH C . G 2 HOH 8 1116 1116 HOH HOH C . G 2 HOH 9 1117 1117 HOH HOH C . G 2 HOH 10 1118 1118 HOH HOH C . G 2 HOH 11 1122 1122 HOH HOH C . G 2 HOH 12 1123 1123 HOH HOH C . G 2 HOH 13 1124 1124 HOH HOH C . G 2 HOH 14 1127 1127 HOH HOH C . G 2 HOH 15 1128 1128 HOH HOH C . G 2 HOH 16 1131 1131 HOH HOH C . G 2 HOH 17 1135 1135 HOH HOH C . G 2 HOH 18 1136 1136 HOH HOH C . G 2 HOH 19 1137 1137 HOH HOH C . G 2 HOH 20 1138 1138 HOH HOH C . G 2 HOH 21 1141 1141 HOH HOH C . G 2 HOH 22 1148 1148 HOH HOH C . G 2 HOH 23 1149 1149 HOH HOH C . G 2 HOH 24 1162 1162 HOH HOH C . G 2 HOH 25 1163 1163 HOH HOH C . G 2 HOH 26 1168 1168 HOH HOH C . G 2 HOH 27 1171 1171 HOH HOH C . G 2 HOH 28 1174 1174 HOH HOH C . G 2 HOH 29 1175 1175 HOH HOH C . G 2 HOH 30 1176 1176 HOH HOH C . G 2 HOH 31 1178 1178 HOH HOH C . G 2 HOH 32 1179 1179 HOH HOH C . G 2 HOH 33 1181 1181 HOH HOH C . G 2 HOH 34 1182 1182 HOH HOH C . G 2 HOH 35 1183 1183 HOH HOH C . G 2 HOH 36 1184 1184 HOH HOH C . G 2 HOH 37 1185 1185 HOH HOH C . G 2 HOH 38 1186 1186 HOH HOH C . G 2 HOH 39 1187 1187 HOH HOH C . G 2 HOH 40 1188 1188 HOH HOH C . G 2 HOH 41 1189 1189 HOH HOH C . G 2 HOH 42 1196 1196 HOH HOH C . G 2 HOH 43 1198 1198 HOH HOH C . G 2 HOH 44 1205 1205 HOH HOH C . G 2 HOH 45 1207 1207 HOH HOH C . G 2 HOH 46 1213 1213 HOH HOH C . G 2 HOH 47 1216 1216 HOH HOH C . G 2 HOH 48 1218 1218 HOH HOH C . G 2 HOH 49 1220 1220 HOH HOH C . G 2 HOH 50 1221 1221 HOH HOH C . G 2 HOH 51 1225 1225 HOH HOH C . G 2 HOH 52 1227 1227 HOH HOH C . G 2 HOH 53 1230 1230 HOH HOH C . G 2 HOH 54 1234 1234 HOH HOH C . G 2 HOH 55 1249 1249 HOH HOH C . G 2 HOH 56 1252 1252 HOH HOH C . G 2 HOH 57 1255 1255 HOH HOH C . G 2 HOH 58 1258 1258 HOH HOH C . G 2 HOH 59 1272 1272 HOH HOH C . G 2 HOH 60 1282 1282 HOH HOH C . G 2 HOH 61 1283 1283 HOH HOH C . G 2 HOH 62 1285 1285 HOH HOH C . G 2 HOH 63 1294 1294 HOH HOH C . G 2 HOH 64 1295 1295 HOH HOH C . G 2 HOH 65 1298 1298 HOH HOH C . G 2 HOH 66 1299 1299 HOH HOH C . G 2 HOH 67 1300 1300 HOH HOH C . G 2 HOH 68 1301 1301 HOH HOH C . G 2 HOH 69 1302 1302 HOH HOH C . G 2 HOH 70 1303 1303 HOH HOH C . G 2 HOH 71 1319 1319 HOH HOH C . G 2 HOH 72 1320 1320 HOH HOH C . G 2 HOH 73 1327 1327 HOH HOH C . H 2 HOH 1 1100 1100 HOH HOH D . H 2 HOH 2 1101 1101 HOH HOH D . H 2 HOH 3 1105 1105 HOH HOH D . H 2 HOH 4 1106 1106 HOH HOH D . H 2 HOH 5 1107 1107 HOH HOH D . H 2 HOH 6 1108 1108 HOH HOH D . H 2 HOH 7 1109 1109 HOH HOH D . H 2 HOH 8 1112 1112 HOH HOH D . H 2 HOH 9 1113 1113 HOH HOH D . H 2 HOH 10 1125 1125 HOH HOH D . H 2 HOH 11 1126 1126 HOH HOH D . H 2 HOH 12 1129 1129 HOH HOH D . H 2 HOH 13 1130 1130 HOH HOH D . H 2 HOH 14 1132 1132 HOH HOH D . H 2 HOH 15 1133 1133 HOH HOH D . H 2 HOH 16 1134 1134 HOH HOH D . H 2 HOH 17 1139 1139 HOH HOH D . H 2 HOH 18 1140 1140 HOH HOH D . H 2 HOH 19 1142 1142 HOH HOH D . H 2 HOH 20 1143 1143 HOH HOH D . H 2 HOH 21 1144 1144 HOH HOH D . H 2 HOH 22 1145 1145 HOH HOH D . H 2 HOH 23 1146 1146 HOH HOH D . H 2 HOH 24 1147 1147 HOH HOH D . H 2 HOH 25 1164 1164 HOH HOH D . H 2 HOH 26 1165 1165 HOH HOH D . H 2 HOH 27 1166 1166 HOH HOH D . H 2 HOH 28 1167 1167 HOH HOH D . H 2 HOH 29 1169 1169 HOH HOH D . H 2 HOH 30 1170 1170 HOH HOH D . H 2 HOH 31 1172 1172 HOH HOH D . H 2 HOH 32 1173 1173 HOH HOH D . H 2 HOH 33 1177 1177 HOH HOH D . H 2 HOH 34 1180 1180 HOH HOH D . H 2 HOH 35 1199 1199 HOH HOH D . H 2 HOH 36 1200 1200 HOH HOH D . H 2 HOH 37 1201 1201 HOH HOH D . H 2 HOH 38 1209 1209 HOH HOH D . H 2 HOH 39 1211 1211 HOH HOH D . H 2 HOH 40 1214 1214 HOH HOH D . H 2 HOH 41 1223 1223 HOH HOH D . H 2 HOH 42 1224 1224 HOH HOH D . H 2 HOH 43 1231 1231 HOH HOH D . H 2 HOH 44 1233 1233 HOH HOH D . H 2 HOH 45 1235 1235 HOH HOH D . H 2 HOH 46 1240 1240 HOH HOH D . H 2 HOH 47 1242 1242 HOH HOH D . H 2 HOH 48 1244 1244 HOH HOH D . H 2 HOH 49 1246 1246 HOH HOH D . H 2 HOH 50 1250 1250 HOH HOH D . H 2 HOH 51 1251 1251 HOH HOH D . H 2 HOH 52 1256 1256 HOH HOH D . H 2 HOH 53 1257 1257 HOH HOH D . H 2 HOH 54 1260 1260 HOH HOH D . H 2 HOH 55 1263 1263 HOH HOH D . H 2 HOH 56 1264 1264 HOH HOH D . H 2 HOH 57 1266 1266 HOH HOH D . H 2 HOH 58 1268 1268 HOH HOH D . H 2 HOH 59 1269 1269 HOH HOH D . H 2 HOH 60 1273 1273 HOH HOH D . H 2 HOH 61 1275 1275 HOH HOH D . H 2 HOH 62 1277 1277 HOH HOH D . H 2 HOH 63 1284 1284 HOH HOH D . H 2 HOH 64 1286 1286 HOH HOH D . H 2 HOH 65 1296 1296 HOH HOH D . H 2 HOH 66 1297 1297 HOH HOH D . H 2 HOH 67 1304 1304 HOH HOH D . H 2 HOH 68 1321 1321 HOH HOH D . H 2 HOH 69 1322 1322 HOH HOH D . H 2 HOH 70 1323 1323 HOH HOH D . H 2 HOH 71 1324 1324 HOH HOH D . H 2 HOH 72 1326 1326 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 EPMR phasing . ? 2 SHELXL-97 refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 2Q1O _cell.length_a 22.900 _cell.length_b 32.060 _cell.length_c 42.930 _cell.angle_alpha 96.24 _cell.angle_beta 83.87 _cell.angle_gamma 93.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Q1O _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2Q1O _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_percent_sol 39.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_details ;Droplets containing 0.5 mM oligonucleotide, 0.8 M ammonium sulfate, 0.05 M MES, pH 6.0, were equilibrated against a reservoir of 1.6 M ammonium sulfate, 0.1 M MES, pH 6.0. , VAPOR DIFFUSION, SITTING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 '0.8 M ammonium sulfate' ? ? ? 1 2 1 '0.05 M MES' ? ? ? 1 3 2 '1.6 M ammonium sulfate' ? ? ? 1 4 2 '0.1 M MES' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2005-11-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9199 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9199 # _reflns.entry_id 2Q1O _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.10 _reflns.d_resolution_low 42.45 _reflns.number_all 48767 _reflns.number_obs 45791 _reflns.percent_possible_obs 93.9 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.4 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.10 _reflns_shell.d_res_low 1.14 _reflns_shell.percent_possible_all 90.7 _reflns_shell.Rmerge_I_obs 0.239 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4414 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2Q1O _refine.ls_d_res_high 1.10 _refine.ls_d_res_low 10.0 _refine.pdbx_ls_sigma_F 4 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 45752 _refine.ls_number_reflns_obs 43113 _refine.ls_number_reflns_R_free 2152 _refine.ls_percent_reflns_obs 94.2 _refine.ls_R_factor_all 0.114 _refine.ls_R_factor_obs 0.110 _refine.ls_R_factor_R_work 0.108 _refine.ls_R_factor_R_free 0.142 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Model of Native A-RNA' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1016 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 324 _refine_hist.number_atoms_total 1340 _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.029 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 2Q1O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 2Q1O _struct.title 'Crystal Structure Analysis of the RNA Dodecamer CGC-NF2-AAUUGGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Q1O _struct_keywords.pdbx_keywords RNA _struct_keywords.text '2, 4-Difluorotoluyl Nucleoside, Chemical Modification, RNA, RNAi, Hydrogen Bond' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2Q1O _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code 'CGC(NF2)AAUUGGCG' _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession 2Q1O _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Q1O A 1 ? 12 ? 2Q1O 101 ? 112 ? 101 112 2 1 2Q1O B 1 ? 12 ? 2Q1O 101 ? 112 ? 101 112 3 1 2Q1O C 1 ? 12 ? 2Q1O 101 ? 112 ? 101 112 4 1 2Q1O D 1 ? 12 ? 2Q1O 101 ? 112 ? 101 112 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1210 ? 2 'ABSA (A^2)' 1190 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 3 "O3'" ? ? ? 1_555 A NF2 4 P ? ? A C 103 A NF2 104 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale2 covale both ? A NF2 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A NF2 104 A A 105 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale3 covale both ? B C 3 "O3'" ? ? ? 1_555 B NF2 4 P ? ? B C 103 B NF2 104 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale4 covale both ? B NF2 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B NF2 104 B A 105 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale5 covale both ? C C 3 "O3'" ? ? ? 1_555 C NF2 4 P ? ? C C 103 C NF2 104 1_555 ? ? ? ? ? ? ? 1.585 ? ? covale6 covale both ? C NF2 4 "O3'" ? ? ? 1_555 C A 5 P ? ? C NF2 104 C A 105 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale7 covale both ? D C 3 "O3'" ? ? ? 1_555 D NF2 4 P ? ? D C 103 D NF2 104 1_555 ? ? ? ? ? ? ? 1.575 ? ? covale8 covale both ? D NF2 4 "O3'" ? ? ? 1_555 D A 5 P ? ? D NF2 104 D A 105 1_555 ? ? ? ? ? ? ? 1.596 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 101 B G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 101 B G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 101 B G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 102 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 102 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 102 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 103 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 103 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 103 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 105 B U 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 105 B U 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 6 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 106 B U 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 106 B U 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 6 N1 ? ? A U 107 B A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 6 N6 ? ? A U 107 B A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 108 B A 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 108 B A 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 110 B C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 110 B C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 110 B C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 111 B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 111 B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 111 B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 112 B C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 112 B C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 112 B C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 1 N3 ? ? ? 1_555 D G 12 N1 ? ? C C 101 D G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 1 N4 ? ? ? 1_555 D G 12 O6 ? ? C C 101 D G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C C 1 O2 ? ? ? 1_555 D G 12 N2 ? ? C C 101 D G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 102 D C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 102 D C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 102 D C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 10 N1 ? ? C C 103 D G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 10 O6 ? ? C C 103 D G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 10 N2 ? ? C C 103 D G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C A 5 N1 ? ? ? 1_555 D U 8 N3 ? ? C A 105 D U 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C A 5 N6 ? ? ? 1_555 D U 8 O4 ? ? C A 105 D U 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C A 6 N1 ? ? ? 1_555 D U 7 N3 ? ? C A 106 D U 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C A 6 N6 ? ? ? 1_555 D U 7 O4 ? ? C A 106 D U 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C U 7 N3 ? ? ? 1_555 D A 6 N1 ? ? C U 107 D A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C U 7 O4 ? ? ? 1_555 D A 6 N6 ? ? C U 107 D A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C U 8 N3 ? ? ? 1_555 D A 5 N1 ? ? C U 108 D A 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C U 8 O4 ? ? ? 1_555 D A 5 N6 ? ? C U 108 D A 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 110 D C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 110 D C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 110 D C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 11 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 111 D G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 11 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 111 D G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C C 11 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 111 D G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C G 12 N1 ? ? ? 1_555 D C 1 N3 ? ? C G 112 D C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C G 12 N2 ? ? ? 1_555 D C 1 O2 ? ? C G 112 D C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C G 12 O6 ? ? ? 1_555 D C 1 N4 ? ? C G 112 D C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N7 B G 110 ? ? C8 B G 110 ? ? 1.345 1.305 0.040 0.006 N 2 1 "C2'" C G 102 ? ? "C1'" C G 102 ? ? 1.475 1.526 -0.051 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N9 A A 105 ? ? C4 A A 105 ? ? C5 A A 105 ? ? 108.37 105.80 2.57 0.40 N 2 1 C6 B G 109 ? ? N1 B G 109 ? ? C2 B G 109 ? ? 129.13 125.10 4.03 0.60 N 3 1 N1 B G 109 ? ? C2 B G 109 ? ? N3 B G 109 ? ? 120.25 123.90 -3.65 0.60 N 4 1 N7 B G 109 ? ? C8 B G 109 ? ? N9 B G 109 ? ? 117.36 113.10 4.26 0.50 N 5 1 C4 C U 107 ? ? C5 C U 107 ? ? C6 C U 107 ? ? 115.36 119.70 -4.34 0.60 N 6 1 C5 C U 107 ? ? C6 C U 107 ? ? N1 C U 107 ? ? 127.15 122.70 4.45 0.50 N 7 1 C5 C U 107 ? ? C4 C U 107 ? ? O4 C U 107 ? ? 121.25 125.90 -4.65 0.60 N 8 1 "C3'" D G 102 ? ? "C2'" D G 102 ? ? "C1'" D G 102 ? ? 96.24 101.30 -5.06 0.70 N 9 1 N1 D G 109 ? ? C6 D G 109 ? ? O6 D G 109 ? ? 126.11 119.90 6.21 0.60 N 10 1 C5 D G 109 ? ? C6 D G 109 ? ? O6 D G 109 ? ? 124.59 128.60 -4.01 0.60 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 NF2 F2 F N N 114 NF2 C2 C Y N 115 NF2 C3 C Y N 116 NF2 C4 C Y N 117 NF2 F4 F N N 118 NF2 C1 C Y N 119 NF2 C6 C Y N 120 NF2 C5 C Y N 121 NF2 CM C N N 122 NF2 "C1'" C N S 123 NF2 "O4'" O N N 124 NF2 "C2'" C N R 125 NF2 "O2'" O N N 126 NF2 "C3'" C N S 127 NF2 "O3'" O N N 128 NF2 "C4'" C N R 129 NF2 "C5'" C N N 130 NF2 "O5'" O N N 131 NF2 P P N N 132 NF2 OP1 O N N 133 NF2 OP2 O N N 134 NF2 OP3 O N N 135 NF2 H3 H N N 136 NF2 H6 H N N 137 NF2 HM1 H N N 138 NF2 HM2 H N N 139 NF2 HM3 H N N 140 NF2 "H1'" H N N 141 NF2 "H2'" H N N 142 NF2 "HO2'" H N N 143 NF2 "H3'" H N N 144 NF2 "HO3'" H N N 145 NF2 "H4'" H N N 146 NF2 "H5'" H N N 147 NF2 "H5''" H N N 148 NF2 HOP2 H N N 149 NF2 HOP3 H N N 150 U OP3 O N N 151 U P P N N 152 U OP1 O N N 153 U OP2 O N N 154 U "O5'" O N N 155 U "C5'" C N N 156 U "C4'" C N R 157 U "O4'" O N N 158 U "C3'" C N S 159 U "O3'" O N N 160 U "C2'" C N R 161 U "O2'" O N N 162 U "C1'" C N R 163 U N1 N N N 164 U C2 C N N 165 U O2 O N N 166 U N3 N N N 167 U C4 C N N 168 U O4 O N N 169 U C5 C N N 170 U C6 C N N 171 U HOP3 H N N 172 U HOP2 H N N 173 U "H5'" H N N 174 U "H5''" H N N 175 U "H4'" H N N 176 U "H3'" H N N 177 U "HO3'" H N N 178 U "H2'" H N N 179 U "HO2'" H N N 180 U "H1'" H N N 181 U H3 H N N 182 U H5 H N N 183 U H6 H N N 184 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 NF2 F2 C2 sing N N 118 NF2 C2 C3 doub Y N 119 NF2 C2 C1 sing Y N 120 NF2 C3 C4 sing Y N 121 NF2 C3 H3 sing N N 122 NF2 C4 F4 sing N N 123 NF2 C4 C5 doub Y N 124 NF2 C1 C6 doub Y N 125 NF2 C1 "C1'" sing N N 126 NF2 C6 C5 sing Y N 127 NF2 C6 H6 sing N N 128 NF2 C5 CM sing N N 129 NF2 CM HM1 sing N N 130 NF2 CM HM2 sing N N 131 NF2 CM HM3 sing N N 132 NF2 "C1'" "O4'" sing N N 133 NF2 "C1'" "C2'" sing N N 134 NF2 "C1'" "H1'" sing N N 135 NF2 "O4'" "C4'" sing N N 136 NF2 "C2'" "O2'" sing N N 137 NF2 "C2'" "C3'" sing N N 138 NF2 "C2'" "H2'" sing N N 139 NF2 "O2'" "HO2'" sing N N 140 NF2 "C3'" "O3'" sing N N 141 NF2 "C3'" "C4'" sing N N 142 NF2 "C3'" "H3'" sing N N 143 NF2 "O3'" "HO3'" sing N N 144 NF2 "C4'" "C5'" sing N N 145 NF2 "C4'" "H4'" sing N N 146 NF2 "C5'" "O5'" sing N N 147 NF2 "C5'" "H5'" sing N N 148 NF2 "C5'" "H5''" sing N N 149 NF2 "O5'" P sing N N 150 NF2 P OP1 doub N N 151 NF2 P OP2 sing N N 152 NF2 P OP3 sing N N 153 NF2 OP2 HOP2 sing N N 154 NF2 OP3 HOP3 sing N N 155 U OP3 P sing N N 156 U OP3 HOP3 sing N N 157 U P OP1 doub N N 158 U P OP2 sing N N 159 U P "O5'" sing N N 160 U OP2 HOP2 sing N N 161 U "O5'" "C5'" sing N N 162 U "C5'" "C4'" sing N N 163 U "C5'" "H5'" sing N N 164 U "C5'" "H5''" sing N N 165 U "C4'" "O4'" sing N N 166 U "C4'" "C3'" sing N N 167 U "C4'" "H4'" sing N N 168 U "O4'" "C1'" sing N N 169 U "C3'" "O3'" sing N N 170 U "C3'" "C2'" sing N N 171 U "C3'" "H3'" sing N N 172 U "O3'" "HO3'" sing N N 173 U "C2'" "O2'" sing N N 174 U "C2'" "C1'" sing N N 175 U "C2'" "H2'" sing N N 176 U "O2'" "HO2'" sing N N 177 U "C1'" N1 sing N N 178 U "C1'" "H1'" sing N N 179 U N1 C2 sing N N 180 U N1 C6 sing N N 181 U C2 O2 doub N N 182 U C2 N3 sing N N 183 U N3 C4 sing N N 184 U N3 H3 sing N N 185 U C4 O4 doub N N 186 U C4 C5 sing N N 187 U C5 C6 doub N N 188 U C5 H5 sing N N 189 U C6 H6 sing N N 190 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2Q1O 'double helix' 2Q1O 'a-form double helix' 2Q1O 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 12 1_555 0.149 -0.115 -0.033 6.688 -12.022 -0.775 1 A_C101:G112_B A 101 ? B 112 ? 19 1 1 A G 2 1_555 B C 11 1_555 -0.243 -0.154 0.043 1.467 -12.779 -0.464 2 A_G102:C111_B A 102 ? B 111 ? 19 1 1 A C 3 1_555 B G 10 1_555 0.154 -0.142 -0.016 5.455 -16.825 -1.802 3 A_C103:G110_B A 103 ? B 110 ? 19 1 1 A A 5 1_555 B U 8 1_555 0.019 -0.097 0.078 2.485 -12.539 3.254 4 A_A105:U108_B A 105 ? B 108 ? 20 1 1 A A 6 1_555 B U 7 1_555 0.071 -0.107 -0.060 2.327 -19.467 -0.769 5 A_A106:U107_B A 106 ? B 107 ? 20 1 1 A U 7 1_555 B A 6 1_555 0.020 -0.105 0.007 -5.576 -22.146 0.903 6 A_U107:A106_B A 107 ? B 106 ? 20 1 1 A U 8 1_555 B A 5 1_555 -0.102 -0.087 0.142 -4.898 -11.298 0.368 7 A_U108:A105_B A 108 ? B 105 ? 20 1 1 A G 10 1_555 B C 3 1_555 -0.145 -0.139 0.018 -4.266 -16.433 -1.384 8 A_G110:C103_B A 110 ? B 103 ? 19 1 1 A C 11 1_555 B G 2 1_555 0.340 -0.188 0.084 -4.095 -16.899 -0.504 9 A_C111:G102_B A 111 ? B 102 ? 19 1 1 A G 12 1_555 B C 1 1_555 -0.196 -0.145 0.021 -4.702 -11.029 -0.699 10 A_G112:C101_B A 112 ? B 101 ? 19 1 1 C C 1 1_555 D G 12 1_555 0.099 -0.126 0.030 5.470 -12.736 -1.929 11 C_C101:G112_D C 101 ? D 112 ? 19 1 1 C G 2 1_555 D C 11 1_555 -0.264 -0.164 0.099 -1.260 -16.212 0.030 12 C_G102:C111_D C 102 ? D 111 ? 19 1 1 C C 3 1_555 D G 10 1_555 0.166 -0.165 0.138 -3.449 -17.166 -4.512 13 C_C103:G110_D C 103 ? D 110 ? 19 1 1 C A 5 1_555 D U 8 1_555 0.047 -0.143 0.183 6.448 -13.722 2.509 14 C_A105:U108_D C 105 ? D 108 ? 20 1 1 C A 6 1_555 D U 7 1_555 0.085 -0.123 0.039 2.810 -23.158 1.066 15 C_A106:U107_D C 106 ? D 107 ? 20 1 1 C U 7 1_555 D A 6 1_555 -0.030 -0.106 -0.011 -3.309 -23.520 -1.404 16 C_U107:A106_D C 107 ? D 106 ? 20 1 1 C U 8 1_555 D A 5 1_555 -0.133 -0.092 0.125 -3.472 -14.084 1.246 17 C_U108:A105_D C 108 ? D 105 ? 20 1 1 C G 10 1_555 D C 3 1_555 -0.155 -0.154 0.095 -3.077 -17.171 -0.696 18 C_G110:C103_D C 110 ? D 103 ? 19 1 1 C C 11 1_555 D G 2 1_555 0.248 -0.125 0.085 0.262 -15.329 0.357 19 C_C111:G102_D C 111 ? D 102 ? 19 1 1 C G 12 1_555 D C 1 1_555 -0.169 -0.095 -0.003 -7.603 -13.299 -0.855 20 C_G112:C101_D C 112 ? D 101 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 12 1_555 A G 2 1_555 B C 11 1_555 -0.417 -1.715 3.337 -2.890 9.838 31.724 -4.551 0.269 2.725 17.435 5.122 33.299 1 AA_C101G102:C111G112_BB A 101 ? B 112 ? A 102 ? B 111 ? 1 A G 2 1_555 B C 11 1_555 A C 3 1_555 B G 10 1_555 -0.421 -1.209 3.171 -1.867 5.696 33.030 -2.976 0.441 2.946 9.918 3.251 33.554 2 AA_G102C103:G110C111_BB A 102 ? B 111 ? A 103 ? B 110 ? 1 A C 3 1_555 B G 10 1_555 A A 5 1_555 B U 8 1_555 -0.007 -3.218 6.244 0.224 22.597 63.626 -4.476 0.021 4.985 20.757 -0.205 67.121 3 AA_C103A105:U108G110_BB A 103 ? B 110 ? A 105 ? B 108 ? 1 A A 5 1_555 B U 8 1_555 A A 6 1_555 B U 7 1_555 -0.367 -1.130 3.294 -0.010 8.036 31.816 -3.337 0.648 2.929 14.374 0.018 32.789 4 AA_A105A106:U107U108_BB A 105 ? B 108 ? A 106 ? B 107 ? 1 A A 6 1_555 B U 7 1_555 A U 7 1_555 B A 6 1_555 0.144 -1.272 3.467 0.065 14.940 31.198 -4.411 -0.233 2.606 25.995 -0.112 34.510 5 AA_A106U107:A106U107_BB A 106 ? B 107 ? A 107 ? B 106 ? 1 A U 7 1_555 B A 6 1_555 A U 8 1_555 B A 5 1_555 0.040 -0.904 3.240 -0.933 7.543 32.707 -2.755 -0.217 2.961 13.173 1.630 33.555 6 AA_U107U108:A105A106_BB A 107 ? B 106 ? A 108 ? B 105 ? 1 A U 8 1_555 B A 5 1_555 A G 10 1_555 B C 3 1_555 0.204 -2.825 6.215 -1.452 19.898 63.504 -4.018 -0.291 5.221 18.432 1.345 66.251 7 AA_U108G110:C103A105_BB A 108 ? B 105 ? A 110 ? B 103 ? 1 A G 10 1_555 B C 3 1_555 A C 11 1_555 B G 2 1_555 0.175 -1.200 3.253 0.379 8.531 34.176 -3.194 -0.235 2.881 14.242 -0.632 35.196 8 AA_G110C111:G102C103_BB A 110 ? B 103 ? A 111 ? B 102 ? 1 A C 11 1_555 B G 2 1_555 A G 12 1_555 B C 1 1_555 0.490 -1.778 3.203 3.537 11.168 31.554 -4.717 -0.327 2.487 19.707 -6.241 33.607 9 AA_C111G112:C101G102_BB A 111 ? B 102 ? A 112 ? B 101 ? 1 C C 1 1_555 D G 12 1_555 C G 2 1_555 D C 11 1_555 -0.254 -1.650 3.292 -3.710 11.131 32.694 -4.360 -0.105 2.620 19.026 6.341 34.682 10 CC_C101G102:C111G112_DD C 101 ? D 112 ? C 102 ? D 111 ? 1 C G 2 1_555 D C 11 1_555 C C 3 1_555 D G 10 1_555 -0.585 -1.362 3.262 -1.530 6.118 35.410 -3.050 0.737 3.014 9.961 2.492 35.949 11 CC_G102C103:G110C111_DD C 102 ? D 111 ? C 103 ? D 110 ? 1 C C 3 1_555 D G 10 1_555 C A 5 1_555 D U 8 1_555 0.795 -2.637 5.860 2.341 20.828 61.962 -3.921 -0.574 4.874 19.642 -2.208 65.076 12 CC_C103A105:U108G110_DD C 103 ? D 110 ? C 105 ? D 108 ? 1 C A 5 1_555 D U 8 1_555 C A 6 1_555 D U 7 1_555 -0.052 -1.210 3.307 1.103 8.556 32.706 -3.418 0.262 2.904 14.874 -1.918 33.795 13 CC_A105A106:U107U108_DD C 105 ? D 108 ? C 106 ? D 107 ? 1 C A 6 1_555 D U 7 1_555 C U 7 1_555 D A 6 1_555 -0.400 -1.253 3.304 -0.849 9.454 32.309 -3.646 0.557 2.844 16.549 1.486 33.639 14 CC_A106U107:A106U107_DD C 106 ? D 107 ? C 107 ? D 106 ? 1 C U 7 1_555 D A 6 1_555 C U 8 1_555 D A 5 1_555 0.305 -0.794 3.196 -0.397 7.378 32.959 -2.505 -0.586 2.951 12.805 0.688 33.755 15 CC_U107U108:A105A106_DD C 107 ? D 106 ? C 108 ? D 105 ? 1 C U 8 1_555 D A 5 1_555 C G 10 1_555 D C 3 1_555 0.249 -3.118 6.124 -0.836 22.195 63.208 -4.374 -0.284 4.911 20.520 0.773 66.613 16 CC_U108G110:C103A105_DD C 108 ? D 105 ? C 110 ? D 103 ? 1 C G 10 1_555 D C 3 1_555 C C 11 1_555 D G 2 1_555 0.412 -1.359 3.179 2.377 4.645 32.361 -3.167 -0.343 2.982 8.268 -4.230 32.767 17 CC_G110C111:G102C103_DD C 110 ? D 103 ? C 111 ? D 102 ? 1 C C 11 1_555 D G 2 1_555 C G 12 1_555 D C 1 1_555 0.604 -1.851 3.326 3.684 10.039 31.429 -4.837 -0.474 2.676 17.896 -6.566 33.155 18 CC_C111G112:C101G102_DD C 111 ? D 102 ? C 112 ? D 101 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Model of Native A-RNA' # _atom_sites.entry_id 2Q1O _atom_sites.fract_transf_matrix[1][1] 0.043668 _atom_sites.fract_transf_matrix[1][2] 0.002985 _atom_sites.fract_transf_matrix[1][3] -0.004408 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031264 _atom_sites.fract_transf_matrix[2][3] 0.003213 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023551 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O P # loop_