data_2Q2F # _entry.id 2Q2F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Q2F RCSB RCSB043063 WWPDB D_1000043063 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Q2F _pdbx_database_status.recvd_initial_deposition_date 2007-05-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Walker, J.R.' 1 'Paramanathan, R.' 2 'Butler-Cole, C.' 3 'Weigelt, J.' 4 'Sundstrom, M.' 5 'Arrowsmith, C.H.' 6 'Edwards, A.M.' 7 'Bochkarev, A.' 8 'Dhe-Paganon, S.' 9 'Structural Genomics Consortium (SGC)' 10 # _citation.id primary _citation.title 'Human Selenoprotein S (VCP-interacting membrane protein).' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Walker, J.R.' 1 primary 'Paramanathan, R.' 2 primary 'Butler-Cole, C.' 3 primary 'Weigelt, J.' 4 primary 'Sundstrom, M.' 5 primary 'Arrowsmith, C.H.' 6 primary 'Edwards, A.M.' 7 primary 'Bochkarev, A.' 8 primary 'Dhe-Paganon, S.' 9 # _cell.entry_id 2Q2F _cell.length_a 119.666 _cell.length_b 18.705 _cell.length_c 37.992 _cell.angle_alpha 90.00 _cell.angle_beta 93.36 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Q2F _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Selenoprotein S' 10786.705 1 ? ? 'Coiled-coil Domain, Residues 52-122' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 68 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VCP-interacting membrane protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)HHHHHHSSGRENLYFQGSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLK(MSE)QEELNAQVEKHKEKLK QLEEEKRRQKIE(MSE)WDS(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGRENLYFQGSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRR QKIEMWDSM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 ARG n 1 12 GLU n 1 13 ASN n 1 14 LEU n 1 15 TYR n 1 16 PHE n 1 17 GLN n 1 18 GLY n 1 19 SER n 1 20 ALA n 1 21 ARG n 1 22 LEU n 1 23 ARG n 1 24 ALA n 1 25 LEU n 1 26 ARG n 1 27 GLN n 1 28 ARG n 1 29 GLN n 1 30 LEU n 1 31 ASP n 1 32 ARG n 1 33 ALA n 1 34 ALA n 1 35 ALA n 1 36 ALA n 1 37 VAL n 1 38 GLU n 1 39 PRO n 1 40 ASP n 1 41 VAL n 1 42 VAL n 1 43 VAL n 1 44 LYS n 1 45 ARG n 1 46 GLN n 1 47 GLU n 1 48 ALA n 1 49 LEU n 1 50 ALA n 1 51 ALA n 1 52 ALA n 1 53 ARG n 1 54 LEU n 1 55 LYS n 1 56 MSE n 1 57 GLN n 1 58 GLU n 1 59 GLU n 1 60 LEU n 1 61 ASN n 1 62 ALA n 1 63 GLN n 1 64 VAL n 1 65 GLU n 1 66 LYS n 1 67 HIS n 1 68 LYS n 1 69 GLU n 1 70 LYS n 1 71 LEU n 1 72 LYS n 1 73 GLN n 1 74 LEU n 1 75 GLU n 1 76 GLU n 1 77 GLU n 1 78 LYS n 1 79 ARG n 1 80 ARG n 1 81 GLN n 1 82 LYS n 1 83 ILE n 1 84 GLU n 1 85 MSE n 1 86 TRP n 1 87 ASP n 1 88 SER n 1 89 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'SELS, VIMP, AD-015, SBBI8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-LIC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SELS_HUMAN _struct_ref.pdbx_db_accession Q9BQE4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSM _struct_ref.pdbx_align_begin 52 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Q2F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 19 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 89 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9BQE4 _struct_ref_seq.db_align_beg 52 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 122 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 52 _struct_ref_seq.pdbx_auth_seq_align_end 122 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Q2F MSE A 1 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 34 1 1 2Q2F HIS A 2 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 35 2 1 2Q2F HIS A 3 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 36 3 1 2Q2F HIS A 4 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 37 4 1 2Q2F HIS A 5 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 38 5 1 2Q2F HIS A 6 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 39 6 1 2Q2F HIS A 7 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 40 7 1 2Q2F SER A 8 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 41 8 1 2Q2F SER A 9 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 42 9 1 2Q2F GLY A 10 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 43 10 1 2Q2F ARG A 11 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 44 11 1 2Q2F GLU A 12 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 45 12 1 2Q2F ASN A 13 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 46 13 1 2Q2F LEU A 14 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 47 14 1 2Q2F TYR A 15 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 48 15 1 2Q2F PHE A 16 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 49 16 1 2Q2F GLN A 17 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 50 17 1 2Q2F GLY A 18 ? UNP Q9BQE4 ? ? 'CLONING ARTIFACT' 51 18 1 2Q2F MSE A 56 ? UNP Q9BQE4 MET 89 'MODIFIED RESIDUE' 89 19 1 2Q2F MSE A 85 ? UNP Q9BQE4 MET 118 'MODIFIED RESIDUE' 118 20 1 2Q2F MSE A 89 ? UNP Q9BQE4 MET 122 'MODIFIED RESIDUE' 122 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Q2F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 37.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details ;Protein buffer: 100mM NaCl, 50mM Tris-HCl pH 8.0, 1mM EDTA, 2mM CaCl2, 5mM Beta-mercaptoethanol. Crystallization buffer: 13% PEG2000 MME, 0.1M Sodium acetate pH 4.6, 0.1M KSCN. Cryo: 30% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-04-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal and K-B pair of biomorph mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97927 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97927 # _reflns.entry_id 2Q2F _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 31.2 _reflns.number_all 13654 _reflns.number_obs 13654 _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.085 _reflns.pdbx_netI_over_sigmaI 25.08 _reflns.B_iso_Wilson_estimate 19.86 _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 88.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.325 _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1216 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2Q2F _refine.ls_number_reflns_obs 12947 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 31.20 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 97.90 _refine.ls_R_factor_obs 0.18291 _refine.ls_R_factor_all 0.18291 _refine.ls_R_factor_R_work 0.18135 _refine.ls_R_factor_R_free 0.21434 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 668 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.B_iso_mean 21.637 _refine.aniso_B[1][1] 0.43 _refine.aniso_B[2][2] -0.46 _refine.aniso_B[3][3] 0.29 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 2.12 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.074 _refine.pdbx_overall_ESU_R_Free 0.077 _refine.overall_SU_ML 0.050 _refine.overall_SU_B 2.658 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 577 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 653 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 31.20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 641 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.498 1.984 ? 858 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 3.675 5.000 ? 82 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.990 22.667 ? 30 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.956 15.000 ? 142 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.702 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.099 0.200 ? 92 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 478 'X-RAY DIFFRACTION' ? r_nbd_refined 0.217 0.200 ? 292 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.286 0.200 ? 464 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.121 0.200 ? 37 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.244 0.200 ? 75 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.189 0.200 ? 19 'X-RAY DIFFRACTION' ? r_mcbond_it 1.856 3.000 ? 411 'X-RAY DIFFRACTION' ? r_mcangle_it 2.356 4.000 ? 636 'X-RAY DIFFRACTION' ? r_scbond_it 4.771 5.000 ? 255 'X-RAY DIFFRACTION' ? r_scangle_it 6.453 7.000 ? 222 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.54 _refine_ls_shell.number_reflns_R_work 816 _refine_ls_shell.R_factor_R_work 0.18 _refine_ls_shell.percent_reflns_obs 84.40 _refine_ls_shell.R_factor_R_free 0.183 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2Q2F _struct.title 'Structure of the human Selenoprotein S (VCP-interacting membrane protein)' _struct.pdbx_descriptor 'Selenoprotein S' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Q2F _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;Anti-parallel coiled-coil, Endoplasmic reticulum, Membrane, Selenium, Selenocysteine, Transmembrane, Structural Genomics, Structural Genomics Consortium, SGC, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The second part of the biological assembly is generated by the two fold axis: -x+1/2, y+1/2, -z. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 19 ? ALA A 36 ? SER A 52 ALA A 69 1 ? 18 HELX_P HELX_P2 2 GLU A 38 ? MSE A 89 ? GLU A 71 MSE A 122 1 ? 52 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 55 C ? ? ? 1_555 A MSE 56 N A ? A LYS 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.336 ? covale2 covale ? ? A LYS 55 C ? ? ? 1_555 A MSE 56 N B ? A LYS 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A LYS 55 C ? ? ? 1_555 A MSE 56 N C ? A LYS 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 56 C A ? ? 1_555 A GLN 57 N ? ? A MSE 89 A GLN 90 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? A MSE 56 C B ? ? 1_555 A GLN 57 N ? ? A MSE 89 A GLN 90 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A MSE 56 C C ? ? 1_555 A GLN 57 N ? ? A MSE 89 A GLN 90 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A GLU 84 C ? ? ? 1_555 A MSE 85 N B ? A GLU 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? A GLU 84 C ? ? ? 1_555 A MSE 85 N A ? A GLU 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? A MSE 85 C B ? ? 1_555 A TRP 86 N ? ? A MSE 118 A TRP 119 1_555 ? ? ? ? ? ? ? 1.333 ? covale10 covale ? ? A MSE 85 C A ? ? 1_555 A TRP 86 N ? ? A MSE 118 A TRP 119 1_555 ? ? ? ? ? ? ? 1.337 ? covale11 covale ? ? A SER 88 C ? ? ? 1_555 A MSE 89 N B ? A SER 121 A MSE 122 1_555 ? ? ? ? ? ? ? 1.329 ? covale12 covale ? ? A SER 88 C ? ? ? 1_555 A MSE 89 N A ? A SER 121 A MSE 122 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CL A 1' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 2' AC3 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE GOL A 3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 LYS A 66 ? LYS A 99 . ? 1_555 ? 2 AC2 2 ARG A 26 ? ARG A 59 . ? 4_546 ? 3 AC2 2 HOH E . ? HOH A 135 . ? 4_546 ? 4 AC3 9 ARG A 32 ? ARG A 65 . ? 1_545 ? 5 AC3 9 PRO A 39 ? PRO A 72 . ? 1_555 ? 6 AC3 9 GLU A 47 ? GLU A 80 . ? 4_547 ? 7 AC3 9 ALA A 48 ? ALA A 81 . ? 4_547 ? 8 AC3 9 ALA A 51 ? ALA A 84 . ? 4_547 ? 9 AC3 9 HOH E . ? HOH A 128 . ? 1_545 ? 10 AC3 9 HOH E . ? HOH A 142 . ? 1_545 ? 11 AC3 9 HOH E . ? HOH A 158 . ? 1_555 ? 12 AC3 9 HOH E . ? HOH A 162 . ? 4_547 ? # _database_PDB_matrix.entry_id 2Q2F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Q2F _atom_sites.fract_transf_matrix[1][1] 0.008357 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000491 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.053462 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026367 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 34 ? ? ? A . n A 1 2 HIS 2 35 ? ? ? A . n A 1 3 HIS 3 36 ? ? ? A . n A 1 4 HIS 4 37 ? ? ? A . n A 1 5 HIS 5 38 ? ? ? A . n A 1 6 HIS 6 39 ? ? ? A . n A 1 7 HIS 7 40 ? ? ? A . n A 1 8 SER 8 41 ? ? ? A . n A 1 9 SER 9 42 ? ? ? A . n A 1 10 GLY 10 43 ? ? ? A . n A 1 11 ARG 11 44 ? ? ? A . n A 1 12 GLU 12 45 ? ? ? A . n A 1 13 ASN 13 46 ? ? ? A . n A 1 14 LEU 14 47 ? ? ? A . n A 1 15 TYR 15 48 ? ? ? A . n A 1 16 PHE 16 49 ? ? ? A . n A 1 17 GLN 17 50 ? ? ? A . n A 1 18 GLY 18 51 51 GLY GLY A . n A 1 19 SER 19 52 52 SER SER A . n A 1 20 ALA 20 53 53 ALA ALA A . n A 1 21 ARG 21 54 54 ARG ARG A . n A 1 22 LEU 22 55 55 LEU LEU A . n A 1 23 ARG 23 56 56 ARG ARG A . n A 1 24 ALA 24 57 57 ALA ALA A . n A 1 25 LEU 25 58 58 LEU LEU A . n A 1 26 ARG 26 59 59 ARG ARG A . n A 1 27 GLN 27 60 60 GLN GLN A . n A 1 28 ARG 28 61 61 ARG ARG A . n A 1 29 GLN 29 62 62 GLN GLN A . n A 1 30 LEU 30 63 63 LEU LEU A . n A 1 31 ASP 31 64 64 ASP ASP A . n A 1 32 ARG 32 65 65 ARG ARG A . n A 1 33 ALA 33 66 66 ALA ALA A . n A 1 34 ALA 34 67 67 ALA ALA A . n A 1 35 ALA 35 68 68 ALA ALA A . n A 1 36 ALA 36 69 69 ALA ALA A . n A 1 37 VAL 37 70 70 VAL VAL A . n A 1 38 GLU 38 71 71 GLU GLU A . n A 1 39 PRO 39 72 72 PRO PRO A . n A 1 40 ASP 40 73 73 ASP ASP A . n A 1 41 VAL 41 74 74 VAL VAL A . n A 1 42 VAL 42 75 75 VAL VAL A . n A 1 43 VAL 43 76 76 VAL VAL A . n A 1 44 LYS 44 77 77 LYS LYS A . n A 1 45 ARG 45 78 78 ARG ARG A . n A 1 46 GLN 46 79 79 GLN GLN A . n A 1 47 GLU 47 80 80 GLU GLU A . n A 1 48 ALA 48 81 81 ALA ALA A . n A 1 49 LEU 49 82 82 LEU LEU A . n A 1 50 ALA 50 83 83 ALA ALA A . n A 1 51 ALA 51 84 84 ALA ALA A . n A 1 52 ALA 52 85 85 ALA ALA A . n A 1 53 ARG 53 86 86 ARG ARG A . n A 1 54 LEU 54 87 87 LEU LEU A . n A 1 55 LYS 55 88 88 LYS LYS A . n A 1 56 MSE 56 89 89 MSE MSE A . n A 1 57 GLN 57 90 90 GLN GLN A . n A 1 58 GLU 58 91 91 GLU GLU A . n A 1 59 GLU 59 92 92 GLU GLU A . n A 1 60 LEU 60 93 93 LEU LEU A . n A 1 61 ASN 61 94 94 ASN ASN A . n A 1 62 ALA 62 95 95 ALA ALA A . n A 1 63 GLN 63 96 96 GLN GLN A . n A 1 64 VAL 64 97 97 VAL VAL A . n A 1 65 GLU 65 98 98 GLU GLU A . n A 1 66 LYS 66 99 99 LYS LYS A . n A 1 67 HIS 67 100 100 HIS HIS A . n A 1 68 LYS 68 101 101 LYS LYS A . n A 1 69 GLU 69 102 102 GLU GLU A . n A 1 70 LYS 70 103 103 LYS LYS A . n A 1 71 LEU 71 104 104 LEU LEU A . n A 1 72 LYS 72 105 105 LYS LYS A . n A 1 73 GLN 73 106 106 GLN GLN A . n A 1 74 LEU 74 107 107 LEU LEU A . n A 1 75 GLU 75 108 108 GLU GLU A . n A 1 76 GLU 76 109 109 GLU GLU A . n A 1 77 GLU 77 110 110 GLU GLU A . n A 1 78 LYS 78 111 111 LYS LYS A . n A 1 79 ARG 79 112 112 ARG ARG A . n A 1 80 ARG 80 113 113 ARG ARG A . n A 1 81 GLN 81 114 114 GLN GLN A . n A 1 82 LYS 82 115 115 LYS LYS A . n A 1 83 ILE 83 116 116 ILE ILE A . n A 1 84 GLU 84 117 117 GLU GLU A . n A 1 85 MSE 85 118 118 MSE MSE A . n A 1 86 TRP 86 119 119 TRP TRP A . n A 1 87 ASP 87 120 120 ASP ASP A . n A 1 88 SER 88 121 121 SER SER A . n A 1 89 MSE 89 122 122 MSE MSE A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 1 1 CL CL A . C 2 CL 1 2 2 CL CL A . D 3 GOL 1 3 3 GOL GOL A . E 4 HOH 1 123 4 HOH HOH A . E 4 HOH 2 124 5 HOH HOH A . E 4 HOH 3 125 6 HOH HOH A . E 4 HOH 4 126 7 HOH HOH A . E 4 HOH 5 127 8 HOH HOH A . E 4 HOH 6 128 9 HOH HOH A . E 4 HOH 7 129 10 HOH HOH A . E 4 HOH 8 130 11 HOH HOH A . E 4 HOH 9 131 12 HOH HOH A . E 4 HOH 10 132 13 HOH HOH A . E 4 HOH 11 133 14 HOH HOH A . E 4 HOH 12 134 15 HOH HOH A . E 4 HOH 13 135 16 HOH HOH A . E 4 HOH 14 136 17 HOH HOH A . E 4 HOH 15 137 18 HOH HOH A . E 4 HOH 16 138 19 HOH HOH A . E 4 HOH 17 139 20 HOH HOH A . E 4 HOH 18 140 21 HOH HOH A . E 4 HOH 19 141 22 HOH HOH A . E 4 HOH 20 142 23 HOH HOH A . E 4 HOH 21 143 24 HOH HOH A . E 4 HOH 22 144 25 HOH HOH A . E 4 HOH 23 145 26 HOH HOH A . E 4 HOH 24 146 27 HOH HOH A . E 4 HOH 25 147 28 HOH HOH A . E 4 HOH 26 148 29 HOH HOH A . E 4 HOH 27 149 30 HOH HOH A . E 4 HOH 28 150 31 HOH HOH A . E 4 HOH 29 151 32 HOH HOH A . E 4 HOH 30 152 33 HOH HOH A . E 4 HOH 31 153 34 HOH HOH A . E 4 HOH 32 154 35 HOH HOH A . E 4 HOH 33 155 36 HOH HOH A . E 4 HOH 34 156 37 HOH HOH A . E 4 HOH 35 157 38 HOH HOH A . E 4 HOH 36 158 39 HOH HOH A . E 4 HOH 37 159 40 HOH HOH A . E 4 HOH 38 160 41 HOH HOH A . E 4 HOH 39 161 42 HOH HOH A . E 4 HOH 40 162 43 HOH HOH A . E 4 HOH 41 163 44 HOH HOH A . E 4 HOH 42 164 45 HOH HOH A . E 4 HOH 43 165 46 HOH HOH A . E 4 HOH 44 166 47 HOH HOH A . E 4 HOH 45 167 48 HOH HOH A . E 4 HOH 46 168 49 HOH HOH A . E 4 HOH 47 169 50 HOH HOH A . E 4 HOH 48 170 51 HOH HOH A . E 4 HOH 49 171 52 HOH HOH A . E 4 HOH 50 172 53 HOH HOH A . E 4 HOH 51 173 54 HOH HOH A . E 4 HOH 52 174 55 HOH HOH A . E 4 HOH 53 175 56 HOH HOH A . E 4 HOH 54 176 57 HOH HOH A . E 4 HOH 55 177 58 HOH HOH A . E 4 HOH 56 178 59 HOH HOH A . E 4 HOH 57 179 60 HOH HOH A . E 4 HOH 58 180 61 HOH HOH A . E 4 HOH 59 181 62 HOH HOH A . E 4 HOH 60 182 63 HOH HOH A . E 4 HOH 61 183 64 HOH HOH A . E 4 HOH 62 184 65 HOH HOH A . E 4 HOH 63 185 66 HOH HOH A . E 4 HOH 64 186 67 HOH HOH A . E 4 HOH 65 187 68 HOH HOH A . E 4 HOH 66 188 69 HOH HOH A . E 4 HOH 67 189 70 HOH HOH A . E 4 HOH 68 190 71 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 56 A MSE 89 ? MET SELENOMETHIONINE 2 A MSE 85 A MSE 118 ? MET SELENOMETHIONINE 3 A MSE 89 A MSE 122 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2740 ? 1 MORE -55 ? 1 'SSA (A^2)' 12270 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_558 -x,y,-z+3 -1.0000000000 0.0000000000 0.0000000000 -6.6800713925 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 113.7800739242 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-05 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 35.5783 9.3324 15.0445 0.1136 0.0942 0.0831 -0.0488 -0.0309 0.0590 5.9482 0.6346 5.2116 1.1038 2.0383 0.7160 -0.1732 0.1692 0.2357 0.2202 0.0005 -0.1566 -0.4700 0.3229 0.1727 'X-RAY DIFFRACTION' 2 ? refined 33.1033 2.6669 19.5414 0.1130 0.1068 0.0523 -0.0193 -0.0448 0.0273 0.0757 9.0769 9.8449 0.8181 -0.7316 -8.7110 -0.0884 -0.0236 0.0059 0.0342 -0.2071 -0.0627 0.0200 0.4013 0.2955 'X-RAY DIFFRACTION' 3 ? refined 30.7237 -1.4304 25.2265 0.1202 0.0730 0.0621 0.0040 -0.0331 0.0111 2.6643 1.2835 8.5385 0.5103 -1.7005 -1.9206 0.1086 -0.0258 0.0572 0.0177 -0.1475 0.0037 -0.1472 0.0106 0.0389 'X-RAY DIFFRACTION' 4 ? refined 30.5435 -9.0851 33.4654 0.1136 0.0774 0.0631 -0.0114 -0.0123 0.0069 3.6050 3.3224 9.1303 1.1063 -5.4263 -3.3597 -0.2602 -0.1133 -0.1661 -0.3228 0.1109 -0.1144 0.5219 -0.0552 0.1493 'X-RAY DIFFRACTION' 5 ? refined 25.2222 -8.9463 39.8312 0.0675 0.0911 0.0917 -0.0060 -0.0279 0.0009 1.2439 5.9938 0.6827 2.6621 -0.2772 -1.0222 -0.2528 0.0418 -0.0050 -0.0292 0.2182 0.0047 0.0612 -0.0074 0.0346 'X-RAY DIFFRACTION' 6 ? refined 18.2802 -11.5003 45.2245 0.0711 0.0806 0.1075 -0.0008 0.0027 -0.0139 5.5306 1.1259 3.0968 -0.4778 -3.2422 -0.6930 0.0460 0.1132 0.0196 -0.0232 -0.0930 0.1513 -0.1344 -0.1762 0.0470 'X-RAY DIFFRACTION' 7 ? refined 12.7380 -10.6834 51.0636 0.0118 0.1269 0.0754 0.0163 0.0168 -0.0346 24.1225 11.5571 5.8614 -1.8224 -11.3643 1.2021 0.2598 -0.3071 0.4205 -0.1556 -0.2063 0.0481 -0.2009 -0.5047 -0.0534 'X-RAY DIFFRACTION' 8 ? refined 6.0279 -14.2070 55.4460 0.0240 0.1532 0.0933 0.0257 0.0430 -0.0024 30.6602 2.5851 7.1904 5.0544 -10.5725 -4.2348 -0.4106 -0.6096 -0.5909 -0.0025 0.0125 0.0457 0.1927 0.1778 0.3980 'X-RAY DIFFRACTION' 9 ? refined -1.3768 -14.4323 60.3777 -0.0815 0.1729 0.0341 0.0266 0.1275 0.0342 26.6841 2.0588 6.1599 0.3141 -10.0274 1.6266 0.0069 -0.5938 0.0421 -0.1193 0.0306 0.0601 -0.4376 0.2225 -0.0375 'X-RAY DIFFRACTION' 10 ? refined -7.2911 -17.1010 66.4458 0.0828 0.2400 0.1419 0.0307 -0.0021 0.0408 20.3293 12.1557 30.7241 3.2243 -12.1708 -10.9418 -0.0129 -1.2932 -0.8402 0.6382 -0.3629 -0.5052 0.5945 1.1540 0.3758 'X-RAY DIFFRACTION' 11 ? refined -15.4327 -17.3557 71.4811 -0.0359 0.2093 0.0800 -0.0411 0.0658 -0.0061 29.0737 8.4209 23.5304 13.3046 -20.3258 -11.7453 0.5071 -1.2466 0.6570 0.1547 -0.6460 0.3888 -0.1511 1.5634 0.1389 'X-RAY DIFFRACTION' 12 ? refined -23.7756 -19.6142 77.0238 0.0159 0.1195 0.1406 -0.0652 0.0777 0.0273 31.1950 11.2599 20.5648 3.6741 -11.5087 -14.6479 1.4451 -1.6585 0.7222 -0.2521 -0.0705 0.8866 -0.8359 0.2641 -1.3746 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 51 A 18 A 58 A 25 ? 'X-RAY DIFFRACTION' ? 2 2 A 59 A 26 A 62 A 29 ? 'X-RAY DIFFRACTION' ? 3 3 A 63 A 30 A 69 A 36 ? 'X-RAY DIFFRACTION' ? 4 4 A 70 A 37 A 76 A 43 ? 'X-RAY DIFFRACTION' ? 5 5 A 77 A 44 A 81 A 48 ? 'X-RAY DIFFRACTION' ? 6 6 A 82 A 49 A 87 A 54 ? 'X-RAY DIFFRACTION' ? 7 7 A 88 A 55 A 92 A 59 ? 'X-RAY DIFFRACTION' ? 8 8 A 93 A 60 A 98 A 65 ? 'X-RAY DIFFRACTION' ? 9 9 A 99 A 66 A 104 A 71 ? 'X-RAY DIFFRACTION' ? 10 10 A 105 A 72 A 109 A 76 ? 'X-RAY DIFFRACTION' ? 11 11 A 110 A 77 A 117 A 84 ? 'X-RAY DIFFRACTION' ? 12 12 A 118 A 85 A 122 A 89 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 59 ? C CZ A ARG 59 ? C NH1 A ARG 59 ? C 115.32 120.30 -4.98 0.50 N 2 1 NE A ARG 59 ? C CZ A ARG 59 ? C NH2 A ARG 59 ? C 124.22 120.30 3.92 0.50 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ARG 59 ? N A A ARG 26 N 2 1 Y 0 A ARG 59 ? CA A A ARG 26 CA 3 1 Y 0 A ARG 59 ? C A A ARG 26 C 4 1 Y 0 A ARG 59 ? O A A ARG 26 O 5 1 Y 0 A ARG 59 ? CB A A ARG 26 CB 6 1 Y 0 A ARG 59 ? CG A A ARG 26 CG 7 1 Y 0 A ARG 59 ? CD A A ARG 26 CD 8 1 Y 0 A ARG 59 ? NE A A ARG 26 NE 9 1 Y 0 A ARG 59 ? CZ A A ARG 26 CZ 10 1 Y 0 A ARG 59 ? NH1 A A ARG 26 NH1 11 1 Y 0 A ARG 59 ? NH2 A A ARG 26 NH2 12 1 Y 1 A LYS 99 ? CE ? A LYS 66 CE 13 1 Y 1 A LYS 99 ? NZ ? A LYS 66 NZ 14 1 Y 1 A GLU 102 ? CD ? A GLU 69 CD 15 1 Y 1 A GLU 102 ? OE1 ? A GLU 69 OE1 16 1 Y 1 A GLU 102 ? OE2 ? A GLU 69 OE2 17 1 Y 1 A LYS 105 ? CE ? A LYS 72 CE 18 1 Y 1 A LYS 105 ? NZ ? A LYS 72 NZ 19 1 Y 1 A GLU 109 ? CD ? A GLU 76 CD 20 1 Y 1 A GLU 109 ? OE1 ? A GLU 76 OE1 21 1 Y 1 A GLU 109 ? OE2 ? A GLU 76 OE2 22 1 Y 1 A GLU 110 ? CD ? A GLU 77 CD 23 1 Y 1 A GLU 110 ? OE1 ? A GLU 77 OE1 24 1 Y 1 A GLU 110 ? OE2 ? A GLU 77 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 34 ? A MSE 1 2 1 Y 1 A HIS 35 ? A HIS 2 3 1 Y 1 A HIS 36 ? A HIS 3 4 1 Y 1 A HIS 37 ? A HIS 4 5 1 Y 1 A HIS 38 ? A HIS 5 6 1 Y 1 A HIS 39 ? A HIS 6 7 1 Y 1 A HIS 40 ? A HIS 7 8 1 Y 1 A SER 41 ? A SER 8 9 1 Y 1 A SER 42 ? A SER 9 10 1 Y 1 A GLY 43 ? A GLY 10 11 1 Y 1 A ARG 44 ? A ARG 11 12 1 Y 1 A GLU 45 ? A GLU 12 13 1 Y 1 A ASN 46 ? A ASN 13 14 1 Y 1 A LEU 47 ? A LEU 14 15 1 Y 1 A TYR 48 ? A TYR 15 16 1 Y 1 A PHE 49 ? A PHE 16 17 1 Y 1 A GLN 50 ? A GLN 17 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 GLYCEROL GOL 4 water HOH #