HEADER STRUCTURAL GENOMICS 30-MAY-07 2Q3H TITLE THE CRYSTAL STRUCTURE OF RHOUA IN THE GDP-BOUND STATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS HOMOLOG GENE FAMILY, MEMBER U; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RAS-LIKE GENE FAMILY MEMBER U, WRCH-1, RYU GTPASE, CDC42- COMPND 5 LIKE GTPASE, RHO GTPASE-LIKE PROTEIN ARHU, GTP-BINDING PROTEIN LIKE COMPND 6 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RHOU; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) WITH WITH PRARE PLASMID ENCODING SOURCE 9 RARE CODON TRNAS,(CHLORAMPHENICOL-RESISTANT); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS GTPASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR C.GILEADI,X.YANG,E.PAPAGRIGORIOU,J.ELKINS,Y.ZHAO,J.BRAY,O.GILEADI, AUTHOR 2 C.UMEANO,E.UGOCHUKWU,J.UPPENBERG,G.BUNKOCZI,F.VON DELFT,A.C.W.PIKE, AUTHOR 3 C.PHILLIPS,P.SAVITSKY,O.FEDOROV,A.EDWARDS,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 4 M.SUNDSTROM,D.A.DOYLE,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 03-APR-24 2Q3H 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2Q3H 1 VERSN REVDAT 2 24-FEB-09 2Q3H 1 VERSN REVDAT 1 19-JUN-07 2Q3H 0 JRNL AUTH C.GILEADI,X.YANG,E.PAPAGRIGORIOU,J.ELKINS,Y.ZHAO,J.BRAY, JRNL AUTH 2 O.GILEADI,C.UMEANO,E.UGOCHUKWU,J.UPPENBERG,G.BUNKOCZI, JRNL AUTH 3 F.VON DELFT,A.C.W.PIKE,C.PHILLIPS,P.SAVITSKY,O.FEDOROV, JRNL AUTH 4 A.EDWARDS,J.WEIGELT,C.H.ARROWSMITH,M.SUNDSTROM,D.A.DOYLE JRNL TITL THE CRYSTAL STRUCTURE OF RHOUA IN THE GDP-BOUND STATE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1107 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1441 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.62000 REMARK 3 B22 (A**2) : 1.50000 REMARK 3 B33 (A**2) : -1.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.621 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1336 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 861 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1828 ; 1.686 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2131 ; 0.977 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 171 ; 7.476 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 49 ;38.699 ;25.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 213 ;13.934 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;14.968 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 224 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1458 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 246 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 280 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 913 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 669 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 682 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 113 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.335 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.533 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 13 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.082 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 879 ; 3.420 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 341 ; 1.045 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1398 ; 4.299 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 521 ; 6.752 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 429 ; 8.106 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0861 -3.2303 14.6322 REMARK 3 T TENSOR REMARK 3 T11: -0.1679 T22: -0.0132 REMARK 3 T33: -0.1044 T12: 0.1276 REMARK 3 T13: -0.0609 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 5.2441 L22: 9.6858 REMARK 3 L33: 2.1711 L12: -4.0615 REMARK 3 L13: -0.5719 L23: 0.4615 REMARK 3 S TENSOR REMARK 3 S11: 0.5862 S12: 0.6493 S13: -0.1600 REMARK 3 S21: -0.3367 S22: -0.5596 S23: 0.5989 REMARK 3 S31: -0.2604 S32: -0.5230 S33: -0.0266 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 163 REMARK 3 RESIDUE RANGE : A 164 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2895 0.0041 10.8588 REMARK 3 T TENSOR REMARK 3 T11: -0.0447 T22: 0.0013 REMARK 3 T33: -0.1122 T12: 0.1977 REMARK 3 T13: 0.0147 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 4.3903 L22: 4.9859 REMARK 3 L33: 2.6607 L12: -3.4276 REMARK 3 L13: -0.7349 L23: 0.9444 REMARK 3 S TENSOR REMARK 3 S11: 0.7873 S12: 0.9580 S13: 0.2871 REMARK 3 S21: -0.8143 S22: -0.8336 S23: 0.1182 REMARK 3 S31: -0.3171 S32: -0.4268 S33: 0.0463 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5595 -18.6476 17.1440 REMARK 3 T TENSOR REMARK 3 T11: -0.1413 T22: -0.2069 REMARK 3 T33: -0.1184 T12: 0.0241 REMARK 3 T13: -0.0693 T23: -0.0543 REMARK 3 L TENSOR REMARK 3 L11: 5.7783 L22: 6.9632 REMARK 3 L33: 4.9918 L12: -1.6892 REMARK 3 L13: -1.5586 L23: -0.0412 REMARK 3 S TENSOR REMARK 3 S11: 0.2259 S12: 0.6200 S13: -0.5824 REMARK 3 S21: -0.3066 S22: -0.2541 S23: -0.0171 REMARK 3 S31: 0.6267 S32: 0.0064 S33: 0.0282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03315 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 47.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : 0.38700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: HOMOLOGY BASED MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2; 0.1M TRIS; 25% PEG 3350, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.03400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.03400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MONOMER IN THE ASU REPRESENTS A BIOLOGICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 30 REMARK 465 MET A 31 REMARK 465 GLY A 32 REMARK 465 PRO A 33 REMARK 465 GLY A 34 REMARK 465 GLU A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 GLY A 38 REMARK 465 ARG A 39 REMARK 465 GLY A 40 REMARK 465 ARG A 41 REMARK 465 ALA A 42 REMARK 465 GLY A 43 REMARK 465 GLY A 44 REMARK 465 ALA A 45 REMARK 465 GLU A 46 REMARK 465 GLY A 47 REMARK 465 ARG A 48 REMARK 465 ASN A 72 REMARK 465 GLY A 73 REMARK 465 TYR A 74 REMARK 465 PRO A 75 REMARK 465 THR A 76 REMARK 465 GLU A 77 REMARK 465 TYR A 78 REMARK 465 ILE A 79 REMARK 465 THR A 228 REMARK 465 GLN A 229 REMARK 465 GLN A 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LEU A 113 CG CD1 CD2 REMARK 470 GLN A 137 CD OE1 NE2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 LYS A 170 CD CE NZ REMARK 470 GLU A 186 CD OE1 OE2 REMARK 470 LYS A 189 NZ REMARK 470 GLU A 194 CD OE1 OE2 REMARK 470 LYS A 196 CE NZ REMARK 470 LYS A 212 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3552 O HOH A 3553 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 114 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 81 -176.18 -170.51 REMARK 500 ASP A 111 -12.06 65.02 REMARK 500 LYS A 112 -103.80 -48.83 REMARK 500 ASN A 210 15.50 59.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 111 LYS A 112 134.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 63 OG1 REMARK 620 2 GDP A3444 O2B 89.1 REMARK 620 3 HOH A3499 O 76.4 76.4 REMARK 620 4 HOH A3500 O 105.4 103.1 178.1 REMARK 620 5 HOH A3501 O 148.6 82.8 72.2 106.0 REMARK 620 6 HOH A3504 O 89.7 154.5 78.6 101.8 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 3444 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q3H RELATED DB: PDB DBREF 2Q3H A 32 230 UNP Q9NPY5 Q9NPY5_HUMAN 32 230 SEQADV 2Q3H SER A 30 UNP Q9NPY5 CLONING ARTIFACT SEQADV 2Q3H MET A 31 UNP Q9NPY5 CLONING ARTIFACT SEQADV 2Q3H LEU A 191 UNP Q9NPY5 CYS 191 CONFLICT SEQRES 1 A 201 SER MET GLY PRO GLY GLU PRO GLY GLY ARG GLY ARG ALA SEQRES 2 A 201 GLY GLY ALA GLU GLY ARG GLY VAL LYS CYS VAL LEU VAL SEQRES 3 A 201 GLY ASP GLY ALA VAL GLY LYS THR SER LEU VAL VAL SER SEQRES 4 A 201 TYR THR THR ASN GLY TYR PRO THR GLU TYR ILE PRO THR SEQRES 5 A 201 ALA PHE ASP ASN PHE SER ALA VAL VAL SER VAL ASP GLY SEQRES 6 A 201 ARG PRO VAL ARG LEU GLN LEU CYS ASP THR ALA GLY GLN SEQRES 7 A 201 ASP GLU PHE ASP LYS LEU ARG PRO LEU CYS TYR THR ASN SEQRES 8 A 201 THR ASP ILE PHE LEU LEU CYS PHE SER VAL VAL SER PRO SEQRES 9 A 201 SER SER PHE GLN ASN VAL SER GLU LYS TRP VAL PRO GLU SEQRES 10 A 201 ILE ARG CYS HIS CYS PRO LYS ALA PRO ILE ILE LEU VAL SEQRES 11 A 201 GLY THR GLN SER ASP LEU ARG GLU ASP VAL LYS VAL LEU SEQRES 12 A 201 ILE GLU LEU ASP LYS CYS LYS GLU LYS PRO VAL PRO GLU SEQRES 13 A 201 GLU ALA ALA LYS LEU LEU ALA GLU GLU ILE LYS ALA ALA SEQRES 14 A 201 SER TYR ILE GLU CYS SER ALA LEU THR GLN LYS ASN LEU SEQRES 15 A 201 LYS GLU VAL PHE ASP ALA ALA ILE VAL ALA GLY ILE GLN SEQRES 16 A 201 TYR SER ASP THR GLN GLN HET MG A 1 1 HET GDP A3444 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 HOH *124(H2 O) HELIX 1 1 GLY A 61 THR A 71 1 11 HELIX 2 2 LEU A 113 THR A 119 5 7 HELIX 3 3 SER A 132 LYS A 142 1 11 HELIX 4 4 LYS A 142 CYS A 151 1 10 HELIX 5 5 GLN A 162 GLU A 167 5 6 HELIX 6 6 ASP A 168 LYS A 177 1 10 HELIX 7 7 PRO A 184 LYS A 196 1 13 HELIX 8 8 ASN A 210 ASP A 227 1 18 SHEET 1 A 6 ASP A 84 VAL A 92 0 SHEET 2 A 6 ARG A 95 ASP A 103 -1 O LEU A 101 N PHE A 86 SHEET 3 A 6 VAL A 50 VAL A 55 1 N VAL A 50 O ARG A 98 SHEET 4 A 6 ILE A 123 SER A 129 1 O CYS A 127 N VAL A 55 SHEET 5 A 6 ILE A 156 THR A 161 1 O THR A 161 N PHE A 128 SHEET 6 A 6 SER A 199 GLU A 202 1 O SER A 199 N LEU A 158 SSBOND 1 CYS A 149 CYS A 178 1555 4555 2.44 LINK MG MG A 1 OG1 THR A 63 1555 1555 2.00 LINK MG MG A 1 O2B GDP A3444 1555 1555 2.18 LINK MG MG A 1 O HOH A3499 1555 1555 1.61 LINK MG MG A 1 O HOH A3500 1555 1555 1.71 LINK MG MG A 1 O HOH A3501 1555 1555 2.28 LINK MG MG A 1 O HOH A3504 1555 1555 2.14 SITE 1 AC1 6 THR A 63 GDP A3444 HOH A3499 HOH A3500 SITE 2 AC1 6 HOH A3501 HOH A3504 SITE 1 AC2 22 MG A 1 ALA A 59 VAL A 60 GLY A 61 SITE 2 AC2 22 LYS A 62 THR A 63 SER A 64 GLN A 162 SITE 3 AC2 22 ASP A 164 LEU A 165 SER A 204 ALA A 205 SITE 4 AC2 22 LEU A 206 HOH A3450 HOH A3454 HOH A3465 SITE 5 AC2 22 HOH A3466 HOH A3482 HOH A3499 HOH A3500 SITE 6 AC2 22 HOH A3501 HOH A3533 CRYST1 82.068 53.600 54.128 90.00 118.80 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012185 0.000000 0.006698 0.00000 SCALE2 0.000000 0.018657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021082 0.00000