HEADER UNKNOWN FUNCTION 30-MAY-07 2Q3L TITLE CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM DUF3478 FAMILY TITLE 2 WITH A SPOIIAA-LIKE FOLD (SHEW_3102) FROM SHEWANELLA LOIHICA PV-4 AT TITLE 3 2.25 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA LOIHICA PV-4; SOURCE 3 ORGANISM_TAXID: 323850; SOURCE 4 STRAIN: BAA-1088, PV-4; SOURCE 5 GENE: YP_001095227.1, SHEW_3102; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS SPOIIAA-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 9 25-JAN-23 2Q3L 1 REMARK SEQADV LINK REVDAT 8 24-JUL-19 2Q3L 1 REMARK LINK REVDAT 7 25-OCT-17 2Q3L 1 REMARK REVDAT 6 18-OCT-17 2Q3L 1 REMARK REVDAT 5 13-JUL-11 2Q3L 1 VERSN REVDAT 4 23-MAR-11 2Q3L 1 JRNL REVDAT 3 28-JUL-10 2Q3L 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2Q3L 1 VERSN REVDAT 1 12-JUN-07 2Q3L 0 JRNL AUTH A.KUMAR,A.LOMIZE,K.K.JIN,D.CARLTON,M.D.MILLER,L.JAROSZEWSKI, JRNL AUTH 2 P.ABDUBEK,T.ASTAKHOVA,H.L.AXELROD,H.J.CHIU,T.CLAYTON,D.DAS, JRNL AUTH 3 M.C.DELLER,L.DUAN,J.FEUERHELM,J.C.GRANT,A.GRZECHNIK,G.W.HAN, JRNL AUTH 4 H.E.KLOCK,M.W.KNUTH,P.KOZBIAL,S.S.KRISHNA,D.MARCIANO, JRNL AUTH 5 D.MCMULLAN,A.T.MORSE,E.NIGOGHOSSIAN,L.OKACH,R.REYES, JRNL AUTH 6 C.L.RIFE,N.SEFCOVIC,H.J.TIEN,C.B.TRAME,H.VAN DEN BEDEM, JRNL AUTH 7 D.WEEKES,Q.XU,K.O.HODGSON,J.WOOLEY,M.A.ELSLIGER,A.M.DEACON, JRNL AUTH 8 A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL OPEN AND CLOSED CONFORMATIONS OF TWO SPOIIAA-LIKE PROTEINS JRNL TITL 2 (YP_749275.1 AND YP_001095227.1) PROVIDE INSIGHTS INTO JRNL TITL 3 MEMBRANE ASSOCIATION AND LIGAND BINDING. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1245 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944218 JRNL DOI 10.1107/S1744309109042481 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 14570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 978 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1937 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 41.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.53000 REMARK 3 B22 (A**2) : 0.80000 REMARK 3 B33 (A**2) : -4.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.264 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2072 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1921 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2811 ; 1.756 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4435 ; 0.871 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 251 ; 4.090 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;33.892 ;24.945 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 340 ;11.555 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.080 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 305 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2262 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 412 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 351 ; 0.220 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1766 ; 0.158 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 957 ; 0.179 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1257 ; 0.090 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 161 ; 0.181 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.168 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.194 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.182 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.174 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1240 ; 1.684 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 523 ; 0.605 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1966 ; 2.845 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 870 ; 5.703 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 845 ; 7.995 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 48 4 REMARK 3 1 B 1 B 48 4 REMARK 3 2 A 53 A 125 4 REMARK 3 2 B 53 B 125 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1757 ; 0.490 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1757 ; 1.020 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3817 36.6464 18.2523 REMARK 3 T TENSOR REMARK 3 T11: -0.1537 T22: -0.1031 REMARK 3 T33: -0.2194 T12: 0.0400 REMARK 3 T13: 0.0405 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 1.6828 L22: 1.2981 REMARK 3 L33: 3.1454 L12: 0.1788 REMARK 3 L13: -0.7976 L23: -0.4857 REMARK 3 S TENSOR REMARK 3 S11: 0.1918 S12: -0.1125 S13: 0.1562 REMARK 3 S21: -0.1757 S22: 0.0460 S23: 0.0522 REMARK 3 S31: -0.2576 S32: -0.3586 S33: -0.2378 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2589 46.2060 -8.2448 REMARK 3 T TENSOR REMARK 3 T11: 0.0633 T22: -0.1743 REMARK 3 T33: -0.1103 T12: -0.0098 REMARK 3 T13: 0.1280 T23: 0.1039 REMARK 3 L TENSOR REMARK 3 L11: 3.3034 L22: 1.9122 REMARK 3 L33: 3.4359 L12: -0.4848 REMARK 3 L13: -1.6716 L23: 1.2025 REMARK 3 S TENSOR REMARK 3 S11: 0.3304 S12: 0.2884 S13: 0.5780 REMARK 3 S21: -0.1069 S22: 0.0455 S23: -0.1467 REMARK 3 S31: -0.7366 S32: 0.0772 S33: -0.3759 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. SODIUM IONS, CHLORIDE IONS AND 2-METHYL-2,4-PENTANEDIOL (MPD) REMARK 3 MOLECULES FROM CRYSTALIZATION ARE MODELED IN THE STRUCTURE. REMARK 3 5. ONE GLYCINE FROM PROTEIN EXPRESSION TAG AT N-TERMINAL REMARK 3 IS ALSO BUILT IN EACH SUBUNIT. REMARK 3 6. RESIDUES 49 TO 52 IN SUBUNIT B ARE DISORDERED AND NOT BUILT REMARK 3 IN THE MODEL. REMARK 4 REMARK 4 2Q3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000043105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.33 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97926, 0.97895 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14575 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 28.653 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 17.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : 0.46700 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M SODIUM CHLORIDE, 37.0% REMARK 280 2-METHYL-2,4-PENTANEDIOL, 0.1M TRIS-HCL PH 7.33, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.34600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.34600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.19350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.98150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.19350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.98150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.34600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.19350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.98150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.34600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.19350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.98150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT REMARK 300 OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE REMARK 300 IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -168.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -174.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 20.19350 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 56.98150 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 49 REMARK 465 THR B 50 REMARK 465 PRO B 51 REMARK 465 GLU B 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 16 CD OE1 NE2 REMARK 470 GLN B 36 OE1 NE2 REMARK 470 ILE B 48 CG1 CG2 CD1 REMARK 470 ILE B 53 CG1 CG2 CD1 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 GLN B 92 OE1 NE2 REMARK 470 ARG B 118 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 16 -119.59 66.93 REMARK 500 SER B 3 48.27 -146.32 REMARK 500 SER B 3 44.27 -146.32 REMARK 500 GLN B 16 -140.13 73.10 REMARK 500 ASP B 17 55.87 -100.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE MPD USED AS A CRYOPROTECTANT WAS A RACEMIC MIXTURE: REMARK 600 (4R,S)-2-METHYL-2,4-PENTANEDIOL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 126 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 104 O REMARK 620 2 ASN A 104 OD1 81.0 REMARK 620 3 THR A 107 O 89.3 163.3 REMARK 620 4 THR A 107 OG1 88.3 111.6 81.5 REMARK 620 5 GLY A 109 O 168.9 89.7 101.1 89.7 REMARK 620 6 HOH A 147 O 85.0 81.7 83.9 163.9 99.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 126 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 104 O REMARK 620 2 ASN B 104 OD1 78.7 REMARK 620 3 THR B 107 O 88.2 164.3 REMARK 620 4 THR B 107 OG1 81.9 112.1 74.1 REMARK 620 5 GLY B 109 O 168.5 94.7 99.6 92.1 REMARK 620 6 HOH B 154 O 89.7 79.7 91.7 163.6 98.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 131 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 372337 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2Q3L A 1 125 UNP A3QHM0 A3QHM0_SHELP 1 125 DBREF 2Q3L B 1 125 UNP A3QHM0 A3QHM0_SHELP 1 125 SEQADV 2Q3L GLY A 0 UNP A3QHM0 EXPRESSION TAG SEQADV 2Q3L MSE A 1 UNP A3QHM0 MET 1 MODIFIED RESIDUE SEQADV 2Q3L MSE A 37 UNP A3QHM0 MET 37 MODIFIED RESIDUE SEQADV 2Q3L GLY B 0 UNP A3QHM0 EXPRESSION TAG SEQADV 2Q3L MSE B 1 UNP A3QHM0 MET 1 MODIFIED RESIDUE SEQADV 2Q3L MSE B 37 UNP A3QHM0 MET 37 MODIFIED RESIDUE SEQRES 1 A 126 GLY MSE SER SER ASN LEU HIS GLY ILE ALA ILE GLY ILE SEQRES 2 A 126 GLU ARG SER GLN ASP ASP PHE TYR LEU ALA PHE LYS ALA SEQRES 3 A 126 VAL GLY LYS LEU THR HIS GLU ASP TYR GLU GLN MSE THR SEQRES 4 A 126 PRO LEU LEU GLU SER ALA LEU ALA GLY ILE LYS THR PRO SEQRES 5 A 126 GLU ILE VAL ALA LEU ILE ASP ILE THR GLU LEU ASP GLY SEQRES 6 A 126 LEU SER LEU HIS ALA ALA TRP ASP ASP LEU LYS LEU GLY SEQRES 7 A 126 LEU LYS HIS GLY LYS GLU PHE LYS ARG VAL ALA ILE ILE SEQRES 8 A 126 GLY GLN GLY GLU LEU GLN GLU TRP ALA THR ARG VAL ALA SEQRES 9 A 126 ASN TRP PHE THR PRO GLY GLU PHE LYS PHE PHE GLU ASP SEQRES 10 A 126 LYS ARG ASP ALA LEU ASP TRP LEU CYS SEQRES 1 B 126 GLY MSE SER SER ASN LEU HIS GLY ILE ALA ILE GLY ILE SEQRES 2 B 126 GLU ARG SER GLN ASP ASP PHE TYR LEU ALA PHE LYS ALA SEQRES 3 B 126 VAL GLY LYS LEU THR HIS GLU ASP TYR GLU GLN MSE THR SEQRES 4 B 126 PRO LEU LEU GLU SER ALA LEU ALA GLY ILE LYS THR PRO SEQRES 5 B 126 GLU ILE VAL ALA LEU ILE ASP ILE THR GLU LEU ASP GLY SEQRES 6 B 126 LEU SER LEU HIS ALA ALA TRP ASP ASP LEU LYS LEU GLY SEQRES 7 B 126 LEU LYS HIS GLY LYS GLU PHE LYS ARG VAL ALA ILE ILE SEQRES 8 B 126 GLY GLN GLY GLU LEU GLN GLU TRP ALA THR ARG VAL ALA SEQRES 9 B 126 ASN TRP PHE THR PRO GLY GLU PHE LYS PHE PHE GLU ASP SEQRES 10 B 126 LYS ARG ASP ALA LEU ASP TRP LEU CYS MODRES 2Q3L MSE A 1 MET SELENOMETHIONINE MODRES 2Q3L MSE A 37 MET SELENOMETHIONINE MODRES 2Q3L MSE B 1 MET SELENOMETHIONINE MODRES 2Q3L MSE B 37 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 37 8 HET MSE B 1 8 HET MSE B 37 8 HET NA A 126 1 HET CL A 127 1 HET MPD A 128 8 HET MPD A 129 8 HET MPD A 130 8 HET MPD A 131 8 HET NA B 126 1 HET CL B 127 1 HET MPD B 128 8 HET MPD B 129 8 HET MPD B 130 8 HET MPD B 131 8 HET MPD B 132 8 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 NA 2(NA 1+) FORMUL 4 CL 2(CL 1-) FORMUL 5 MPD 9(C6 H14 O2) FORMUL 16 HOH *95(H2 O) HELIX 1 1 THR A 30 LEU A 45 1 16 HELIX 2 2 SER A 66 GLY A 81 1 16 HELIX 3 3 GLY A 93 THR A 107 1 15 HELIX 4 4 ASP A 116 CYS A 125 1 10 HELIX 5 5 THR B 30 ILE B 48 1 19 HELIX 6 6 SER B 66 GLY B 81 1 16 HELIX 7 7 LYS B 82 PHE B 84 5 3 HELIX 8 8 GLY B 93 THR B 107 1 15 HELIX 9 9 ASP B 116 CYS B 125 1 10 SHEET 1 A 6 MSE A 1 SER A 2 0 SHEET 2 A 6 HIS B 6 ARG B 14 -1 O HIS B 6 N SER A 2 SHEET 3 A 6 PHE B 19 LEU B 29 -1 O ALA B 22 N GLY B 11 SHEET 4 A 6 VAL B 54 LEU B 65 1 O GLY B 64 N LEU B 29 SHEET 5 A 6 ARG B 86 ILE B 90 1 O ILE B 90 N ILE B 59 SHEET 6 A 6 GLU B 110 PHE B 114 1 O PHE B 114 N ILE B 89 SHEET 1 B 6 GLU A 110 PHE A 114 0 SHEET 2 B 6 PHE A 84 ILE A 90 1 N ILE A 89 O PHE A 114 SHEET 3 B 6 ILE A 53 LEU A 65 1 N ALA A 55 O ALA A 88 SHEET 4 B 6 ASP A 18 LEU A 29 1 N GLY A 27 O GLU A 61 SHEET 5 B 6 HIS A 6 SER A 15 -1 N GLY A 11 O ALA A 22 SHEET 6 B 6 MSE B 1 SER B 2 -1 O SER B 2 N HIS A 6 LINK C GLY A 0 N AMSE A 1 1555 1555 1.33 LINK C GLY A 0 N BMSE A 1 1555 1555 1.34 LINK C AMSE A 1 N SER A 2 1555 1555 1.34 LINK C BMSE A 1 N SER A 2 1555 1555 1.33 LINK C GLN A 36 N MSE A 37 1555 1555 1.31 LINK C MSE A 37 N THR A 38 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C GLN B 36 N MSE B 37 1555 1555 1.33 LINK C MSE B 37 N THR B 38 1555 1555 1.33 LINK O ASN A 104 NA NA A 126 1555 1555 2.50 LINK OD1 ASN A 104 NA NA A 126 1555 1555 2.55 LINK O THR A 107 NA NA A 126 1555 1555 2.35 LINK OG1 THR A 107 NA NA A 126 1555 1555 2.53 LINK O GLY A 109 NA NA A 126 1555 1555 2.25 LINK NA NA A 126 O HOH A 147 1555 1555 2.45 LINK O ASN B 104 NA NA B 126 1555 1555 2.42 LINK OD1 ASN B 104 NA NA B 126 1555 1555 2.49 LINK O THR B 107 NA NA B 126 1555 1555 2.25 LINK OG1 THR B 107 NA NA B 126 1555 1555 2.55 LINK O GLY B 109 NA NA B 126 1555 1555 2.17 LINK NA NA B 126 O HOH B 154 1555 1555 2.45 SITE 1 AC1 4 ASN A 104 THR A 107 GLY A 109 HOH A 147 SITE 1 AC2 4 ASN B 104 THR B 107 GLY B 109 HOH B 154 SITE 1 AC3 2 HIS B 31 SER B 66 SITE 1 AC4 2 HIS A 31 SER A 66 SITE 1 AC5 2 TRP A 71 HOH A 170 SITE 1 AC6 7 LEU B 41 LEU B 76 GLY B 77 GLY B 81 SITE 2 AC6 7 PHE B 84 HOH B 148 HOH B 150 SITE 1 AC7 4 ASP A 73 THR A 107 MPD A 129 MPD A 130 SITE 1 AC8 4 TYR A 34 LEU A 62 ASP A 73 MPD A 128 SITE 1 AC9 3 TYR B 34 ASP B 73 MPD B 132 SITE 1 BC1 1 MPD B 132 SITE 1 BC2 6 GLY B 77 PHE B 111 MPD B 130 MPD B 131 SITE 2 BC2 6 HOH B 148 HOH B 150 SITE 1 BC3 5 LEU A 41 GLY A 77 PHE A 111 MPD A 128 SITE 2 BC3 5 HOH A 151 SITE 1 BC4 3 TRP A 105 HOH A 185 TRP B 71 CRYST1 40.387 113.963 130.692 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007652 0.00000