HEADER PLANT PROTEIN 30-MAY-07 2Q3N TITLE AGGLUTININ FROM ABRUS PRECATORIUS (APA-I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ-1 A CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 21-280; COMPND 5 EC: 3.2.2.22; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AGGLUTININ-1 B CHAIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 281-547 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ABRUS PRECATORIUS; SOURCE 3 ORGANISM_COMMON: INDIAN LICORICE; SOURCE 4 ORGANISM_TAXID: 3816; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ABRUS PRECATORIUS; SOURCE 7 ORGANISM_COMMON: INDIAN LICORICE; SOURCE 8 ORGANISM_TAXID: 3816 KEYWDS RIBOSOME-INACTIVATING PROTEIN, IMMUNOTOXIN, AGGLUTININ ABRIN, PLANT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BAGARIA,K.SURENDRANATH,U.A.RAMAGOPAL,S.RAMAKUMAR,A.A.KARANDE REVDAT 5 30-AUG-23 2Q3N 1 HETSYN REVDAT 4 29-JUL-20 2Q3N 1 COMPND REMARK HETNAM SITE REVDAT 3 13-JUL-11 2Q3N 1 VERSN REVDAT 2 24-FEB-09 2Q3N 1 VERSN REVDAT 1 26-JUN-07 2Q3N 0 SPRSDE 26-JUN-07 2Q3N 2AMZ JRNL AUTH A.BAGARIA,K.SURENDRANATH,U.A.RAMAGOPAL,S.RAMAKUMAR, JRNL AUTH 2 A.A.KARANDE JRNL TITL STRUCTURE-FUNCTION ANALYSIS AND INSIGHTS INTO THE REDUCED JRNL TITL 2 TOXICITY OF ABRUS PRECATORIUS AGGLUTININ I IN RELATION TO JRNL TITL 3 ABRIN. JRNL REF J.BIOL.CHEM. V. 281 34465 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16772301 JRNL DOI 10.1074/JBC.M601777200 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1115 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3983 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.580 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.350 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 47.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.849 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4125 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5621 ; 1.725 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 9.471 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;40.285 ;24.270 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 664 ;22.527 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.125 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 635 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3121 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2007 ; 0.266 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2765 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 162 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.310 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2565 ; 0.282 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4100 ; 0.523 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1782 ; 0.798 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1521 ; 1.387 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1616 60.1346 42.5006 REMARK 3 T TENSOR REMARK 3 T11: -0.2275 T22: -0.3853 REMARK 3 T33: -0.1332 T12: -0.0644 REMARK 3 T13: -0.0062 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 5.2970 L22: 4.7733 REMARK 3 L33: 5.6921 L12: -1.8641 REMARK 3 L13: 0.6221 L23: 1.2709 REMARK 3 S TENSOR REMARK 3 S11: 0.1862 S12: 0.4475 S13: -0.0442 REMARK 3 S21: -0.7555 S22: -0.2301 S23: 0.1431 REMARK 3 S31: -0.0673 S32: -0.1204 S33: 0.0439 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8664 65.1457 61.3771 REMARK 3 T TENSOR REMARK 3 T11: -0.3107 T22: -0.3564 REMARK 3 T33: -0.0732 T12: -0.1936 REMARK 3 T13: -0.0357 T23: -0.1356 REMARK 3 L TENSOR REMARK 3 L11: 6.2657 L22: 6.3578 REMARK 3 L33: 5.2385 L12: -4.5850 REMARK 3 L13: -1.8206 L23: 2.4276 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: -0.2464 S13: -0.1088 REMARK 3 S21: 0.1947 S22: -0.0148 S23: 0.4193 REMARK 3 S31: 0.3774 S32: -0.3555 S33: 0.0941 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 143 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0623 79.8833 80.4323 REMARK 3 T TENSOR REMARK 3 T11: -0.3367 T22: -0.0840 REMARK 3 T33: 0.0399 T12: -0.0739 REMARK 3 T13: 0.1747 T23: -0.1287 REMARK 3 L TENSOR REMARK 3 L11: 8.0848 L22: 8.2464 REMARK 3 L33: 4.9759 L12: -2.3184 REMARK 3 L13: -1.9670 L23: 1.5738 REMARK 3 S TENSOR REMARK 3 S11: -0.1498 S12: -0.2951 S13: -0.4963 REMARK 3 S21: 0.5296 S22: 0.1030 S23: 0.7024 REMARK 3 S31: 0.2374 S32: -0.1760 S33: 0.0467 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 144 B 267 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2599 75.3652 73.2310 REMARK 3 T TENSOR REMARK 3 T11: -0.2807 T22: -0.0579 REMARK 3 T33: -0.0564 T12: -0.1150 REMARK 3 T13: -0.0753 T23: -0.3154 REMARK 3 L TENSOR REMARK 3 L11: 8.5145 L22: 5.6131 REMARK 3 L33: 4.6492 L12: -0.8131 REMARK 3 L13: -2.4839 L23: 0.2904 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: -0.8282 S13: 0.3472 REMARK 3 S21: 0.5214 S22: 0.4435 S23: -0.5965 REMARK 3 S31: -0.1501 S32: 1.0232 S33: -0.3684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Q3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000043107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11360 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: ABRIN-A (PDB CODE: 1ABR) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TRIS-HCL BUFFER, PH 8.5, , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.56100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.56100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.62650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.56100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.56100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.62650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.56100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.56100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.62650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.56100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.56100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.62650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 AUTHOR STATED THE BIOLOGICAL UNIT OF THE PROTEIN IS REMARK 300 A NON-OBLIGATE TETRAMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 105.25300 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 LEU A 249 REMARK 465 ASN A 250 REMARK 465 ALA A 251 REMARK 465 THR A 252 REMARK 465 GLN A 253 REMARK 465 SER A 254 REMARK 465 PRO A 255 REMARK 465 LEU A 256 REMARK 465 LEU A 257 REMARK 465 ILE A 258 REMARK 465 ARG A 259 REMARK 465 SER A 260 REMARK 465 VAL B 1 REMARK 465 VAL B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 SER B 5 REMARK 465 LYS B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 140 CG CD1 CD2 REMARK 470 GLU B 200 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 192 OG1 THR A 196 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 61 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 TYR A 73 N - CA - C ANGL. DEV. = 24.5 DEGREES REMARK 500 PRO B 106 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 18 -45.02 -26.35 REMARK 500 PHE A 19 -73.34 -65.66 REMARK 500 THR A 28 100.91 -54.45 REMARK 500 TYR A 57 -75.61 -103.64 REMARK 500 SER A 58 -138.81 -103.59 REMARK 500 ASP A 59 27.17 -163.77 REMARK 500 THR A 60 -103.38 14.04 REMARK 500 ASN A 71 109.31 24.79 REMARK 500 ALA A 72 17.95 58.21 REMARK 500 TYR A 73 152.55 -36.28 REMARK 500 ARG A 87 11.06 -67.73 REMARK 500 THR A 99 171.93 -58.48 REMARK 500 ASP A 109 173.69 -59.00 REMARK 500 SER A 145 85.59 -64.31 REMARK 500 MET A 160 1.28 -58.69 REMARK 500 VAL A 161 -65.37 -133.25 REMARK 500 ALA A 203 -73.80 -54.59 REMARK 500 VAL A 204 -43.76 -28.47 REMARK 500 VAL A 208 -74.87 -116.41 REMARK 500 GLN A 209 45.27 -88.91 REMARK 500 ARG A 222 50.48 -96.29 REMARK 500 GLN A 223 41.61 31.79 REMARK 500 CYS B 8 107.69 -22.68 REMARK 500 ASP B 22 15.13 54.47 REMARK 500 ASN B 31 25.03 80.19 REMARK 500 ASN B 34 120.10 -39.07 REMARK 500 ASN B 35 122.31 -33.73 REMARK 500 LEU B 41 77.67 -118.58 REMARK 500 ASN B 51 5.91 -63.08 REMARK 500 LYS B 60 23.98 82.28 REMARK 500 ALA B 90 -80.10 -15.69 REMARK 500 SER B 118 139.26 -28.08 REMARK 500 ASN B 140 -85.26 62.37 REMARK 500 PHE B 152 -169.84 -59.70 REMARK 500 VAL B 189 -7.62 -58.86 REMARK 500 GLN B 203 -8.49 -59.14 REMARK 500 ALA B 205 127.94 -39.82 REMARK 500 THR B 206 73.79 69.37 REMARK 500 LYS B 241 -104.81 19.52 REMARK 500 SER B 243 19.90 55.35 REMARK 500 LEU B 266 77.96 -100.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 59 THR A 60 52.07 REMARK 500 THR A 60 VAL A 61 -93.60 REMARK 500 ALA A 72 TYR A 73 76.65 REMARK 500 ALA B 205 THR B 206 32.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 2Q3N A 1 260 UNP Q9M6E9 AGGL_ABRPR 21 280 DBREF 2Q3N B 1 267 UNP Q9M6E9 AGGL_ABRPR 281 547 SEQRES 1 A 260 GLN ASP PRO ILE LYS PHE THR THR GLY SER ALA THR PRO SEQRES 2 A 260 ALA SER TYR ASN GLN PHE ILE ASP ALA LEU ARG GLU ARG SEQRES 3 A 260 LEU THR GLY GLY LEU ILE TYR GLY ILE PRO VAL LEU ARG SEQRES 4 A 260 ASP PRO SER THR VAL GLU LYS PRO ASN GLN TYR VAL THR SEQRES 5 A 260 VAL GLU LEU SER TYR SER ASP THR VAL SER ILE GLN LEU SEQRES 6 A 260 GLY ILE ASP LEU THR ASN ALA TYR VAL VAL ALA TYR ARG SEQRES 7 A 260 ALA GLY SER GLU SER PHE PHE PHE ARG ASN ALA PRO ALA SEQRES 8 A 260 SER ALA SER THR TYR LEU PHE THR GLY THR GLN GLN TYR SEQRES 9 A 260 SER LEU PRO PHE ASP GLY ASN TYR ASP ASP LEU GLU LYS SEQRES 10 A 260 TRP ALA HIS GLN SER ARG GLN ARG ILE SER LEU GLY LEU SEQRES 11 A 260 GLU ALA LEU ARG GLN GLY ILE LYS PHE LEU ARG SER GLY SEQRES 12 A 260 ALA SER ASP ASP GLU GLU ILE ALA ARG THR LEU ILE VAL SEQRES 13 A 260 ILE ILE GLN MET VAL ALA GLU ALA ALA ARG PHE ARG TYR SEQRES 14 A 260 VAL SER LYS LEU VAL VAL ILE SER LEU SER ASN ARG ALA SEQRES 15 A 260 ALA PHE GLN PRO ASP PRO SER MET LEU SER LEU GLU ASN SEQRES 16 A 260 THR TRP GLU PRO LEU SER ARG ALA VAL GLN HIS THR VAL SEQRES 17 A 260 GLN ASP THR PHE PRO GLN ASN VAL THR LEU ILE ASN VAL SEQRES 18 A 260 ARG GLN GLU ARG VAL VAL VAL SER SER LEU SER HIS PRO SEQRES 19 A 260 SER VAL SER ALA LEU ALA LEU MET LEU PHE VAL CYS ASN SEQRES 20 A 260 PRO LEU ASN ALA THR GLN SER PRO LEU LEU ILE ARG SER SEQRES 1 B 267 VAL VAL GLU GLN SER LYS ILE CYS SER SER HIS TYR GLU SEQRES 2 B 267 PRO THR VAL ARG ILE GLY GLY ARG ASP GLY LEU CYS VAL SEQRES 3 B 267 ASP VAL SER ASP ASN ALA TYR ASN ASN GLY ASN PRO ILE SEQRES 4 B 267 ILE LEU TRP LYS CYS LYS ASP GLN LEU GLU VAL ASN GLN SEQRES 5 B 267 LEU TRP THR LEU LYS SER ASP LYS THR ILE ARG SER LYS SEQRES 6 B 267 GLY LYS CYS LEU THR THR TYR GLY TYR ALA PRO GLY ASN SEQRES 7 B 267 TYR VAL MET ILE TYR ASP CYS SER SER ALA VAL ALA GLU SEQRES 8 B 267 ALA THR TYR TRP ASP ILE TRP ASP ASN GLY THR ILE ILE SEQRES 9 B 267 ASN PRO LYS SER GLY LEU VAL LEU SER ALA GLU SER SER SEQRES 10 B 267 SER MET GLY GLY THR LEU THR VAL GLN LYS ASN ASP TYR SEQRES 11 B 267 ARG MET ARG GLN GLY TRP ARG THR GLY ASN ASP THR SER SEQRES 12 B 267 PRO PHE VAL THR SER ILE ALA GLY PHE PHE LYS LEU CYS SEQRES 13 B 267 MET GLU ALA HIS GLY ASN SER MET TRP LEU ASP VAL CYS SEQRES 14 B 267 ASP ILE THR LYS GLU GLU GLN GLN TRP ALA VAL TYR PRO SEQRES 15 B 267 ASP GLY SER ILE ARG PRO VAL GLN ASN THR ASN ASN CYS SEQRES 16 B 267 LEU THR CYS GLU GLU HIS LYS GLN GLY ALA THR ILE VAL SEQRES 17 B 267 MET MET GLY CYS SER ASN ALA TRP ALA SER GLN ARG TRP SEQRES 18 B 267 VAL PHE LYS SER ASP GLY THR ILE TYR ASN LEU TYR ASP SEQRES 19 B 267 ASP MET VAL MET ASP VAL LYS SER SER ASP PRO SER LEU SEQRES 20 B 267 LYS GLN ILE ILE LEU TRP PRO TYR THR GLY ASN ALA ASN SEQRES 21 B 267 GLN MET TRP ALA THR LEU PHE HET NAG A 701 15 HET NAG B 501 15 HET NAG B 601 15 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) HELIX 1 1 THR A 12 THR A 28 1 17 HELIX 2 2 GLU A 45 ASN A 48 5 4 HELIX 3 3 PRO A 90 TYR A 96 1 7 HELIX 4 4 ASN A 111 HIS A 120 1 10 HELIX 5 5 GLY A 129 SER A 142 1 14 HELIX 6 6 ASP A 146 PHE A 167 1 22 HELIX 7 7 PHE A 167 ARG A 181 1 15 HELIX 8 8 ASP A 187 THR A 196 1 10 HELIX 9 9 THR A 196 THR A 207 1 12 HELIX 10 10 PRO A 234 LEU A 239 5 6 HELIX 11 11 GLY B 20 LEU B 24 5 5 HELIX 12 12 ASP B 30 ALA B 32 5 3 HELIX 13 13 GLU B 49 LEU B 53 5 5 HELIX 14 14 VAL B 89 TYR B 94 5 6 HELIX 15 15 ARG B 131 GLY B 135 5 5 HELIX 16 16 TRP B 216 ARG B 220 5 5 HELIX 17 17 ASN B 258 MET B 262 5 5 SHEET 1 A 6 ILE A 4 THR A 7 0 SHEET 2 A 6 TYR A 50 SER A 56 1 O SER A 56 N PHE A 6 SHEET 3 A 6 SER A 62 ASP A 68 -1 O ILE A 67 N VAL A 51 SHEET 4 A 6 VAL A 74 ALA A 79 -1 O ALA A 76 N GLY A 66 SHEET 5 A 6 GLU A 82 PHE A 85 -1 O PHE A 84 N TYR A 77 SHEET 6 A 6 GLN A 102 SER A 105 1 O GLN A 102 N SER A 83 SHEET 1 B 2 GLY A 30 ILE A 32 0 SHEET 2 B 2 ILE A 35 VAL A 37 -1 O VAL A 37 N GLY A 30 SHEET 1 C 2 VAL A 216 ILE A 219 0 SHEET 2 C 2 ARG A 225 VAL A 228 -1 O VAL A 228 N VAL A 216 SHEET 1 D 7 THR B 15 VAL B 16 0 SHEET 2 D 7 TRP B 54 LEU B 56 -1 O TRP B 54 N VAL B 16 SHEET 3 D 7 ILE B 62 SER B 64 -1 O ARG B 63 N THR B 55 SHEET 4 D 7 LYS B 67 THR B 71 -1 O LEU B 69 N ILE B 62 SHEET 5 D 7 VAL B 80 TYR B 83 -1 O TYR B 83 N CYS B 68 SHEET 6 D 7 ASN B 37 TRP B 42 -1 N ASN B 37 O ILE B 82 SHEET 7 D 7 CYS B 25 VAL B 28 -1 N CYS B 25 O TRP B 42 SHEET 1 E 2 ILE B 18 GLY B 19 0 SHEET 2 E 2 ARG B 137 THR B 138 -1 O ARG B 137 N GLY B 19 SHEET 1 F 4 ASP B 96 ILE B 97 0 SHEET 2 F 4 ILE B 103 ASN B 105 -1 O ILE B 104 N ASP B 96 SHEET 3 F 4 LEU B 110 ALA B 114 -1 O LEU B 110 N ASN B 105 SHEET 4 F 4 LEU B 123 GLN B 126 -1 O GLN B 126 N VAL B 111 SHEET 1 G 4 ILE B 186 PRO B 188 0 SHEET 2 G 4 TRP B 178 VAL B 180 -1 N ALA B 179 O ARG B 187 SHEET 3 G 4 PHE B 145 ALA B 150 -1 N THR B 147 O TRP B 178 SHEET 4 G 4 ALA B 264 LEU B 266 -1 O LEU B 266 N SER B 148 SHEET 1 H 2 LEU B 155 HIS B 160 0 SHEET 2 H 2 SER B 163 VAL B 168 -1 O ASP B 167 N CYS B 156 SHEET 1 I 2 ASN B 194 CYS B 198 0 SHEET 2 I 2 ILE B 207 GLY B 211 -1 O MET B 210 N CYS B 195 SHEET 1 J 4 VAL B 222 PHE B 223 0 SHEET 2 J 4 ILE B 229 ASN B 231 -1 O TYR B 230 N VAL B 222 SHEET 3 J 4 MET B 236 ASP B 239 -1 O MET B 236 N ASN B 231 SHEET 4 J 4 ILE B 251 TRP B 253 -1 O ILE B 251 N ASP B 239 SSBOND 1 CYS A 246 CYS B 8 1555 1555 2.02 SSBOND 2 CYS B 25 CYS B 44 1555 1555 2.01 SSBOND 3 CYS B 68 CYS B 85 1555 1555 2.01 SSBOND 4 CYS B 156 CYS B 169 1555 1555 2.04 SSBOND 5 CYS B 195 CYS B 212 1555 1555 2.03 CISPEP 1 THR A 70 ASN A 71 0 -18.18 CISPEP 2 ASN A 71 ALA A 72 0 18.55 CISPEP 3 THR B 138 GLY B 139 0 1.41 CRYST1 141.122 141.122 105.253 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007086 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009501 0.00000