HEADER PLANT PROTEIN 30-MAY-07 2Q3R TITLE ENSEMBLE REFINEMENT OF THE PROTEIN CRYSTAL STRUCTURE OF AT1G76680 FROM TITLE 2 ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 12-OXOPHYTODIENOATE REDUCTASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 12-OXOPHYTODIENOATE- 10,11-REDUCTASE 1, OPDA-REDUCTASE 1, COMPND 5 ATOPR1, FS-AT-I; COMPND 6 EC: 1.3.1.42; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: CV. COLUMBIA; SOURCE 6 GENE: OPR1, AT1G76680, F28O16.5; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVP13 KEYWDS ENSEMBLE REFINEMENT, REFINEMENT METHODOLOGY DEVELOPMENT, STRUCTURAL KEYWDS 2 GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR EUKARYOTIC KEYWDS 3 STRUCTURAL GENOMICS, CESG, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION NUMMDL 16 AUTHOR E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 30-AUG-23 2Q3R 1 REMARK REVDAT 4 10-AUG-11 2Q3R 1 REMARK REVDAT 3 24-FEB-09 2Q3R 1 VERSN REVDAT 2 02-OCT-07 2Q3R 1 JRNL REVDAT 1 19-JUN-07 2Q3R 0 JRNL AUTH E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JRNL TITL ENSEMBLE REFINEMENT OF PROTEIN CRYSTAL STRUCTURES: JRNL TITL 2 VALIDATION AND APPLICATION. JRNL REF STRUCTURE V. 15 1040 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850744 JRNL DOI 10.1016/J.STR.2007.06.019 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD USING AMPLITUDES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3411119.250 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 20779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1072 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3020 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 174 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.150 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.970 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.560 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 48.35 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : FMN.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS PDB ENTRY IS A RE-REFINEMENT USING AN ENSEMBLE MODEL OF THE REMARK 3 PREVIOUSLY REMARK 3 DEPOSITED SINGLE-CONFORMER STRUCTURE 1VJI AND REMARK 3 THE FIRST DATA SET IN THE DEPOSITED STRUCTURE FACTOR FILE REMARK 3 FOR 1VJI ALONG WITH THE R-FREE SET DEFINED THEREIN. THE COORDINATES REMARK 3 WERE GENERATED BY AN AUTOMATED PROTOCOL FROM AN INITIAL MODEL REMARK 3 CONSISTING REMARK 3 OF 16 IDENTICAL COPIES OF THE PROTEIN AND NON-WATER REMARK 3 HETERO-ATOMS ASSIGNED FRACTIONAL OCCUPANCIES ADDING UP TO ONE, AND REMARK 3 A REMARK 3 SINGLE COPY OF THE SOLVENT MOLECULES. REFINEMENT WAS CARRIED OUT REMARK 3 WITH REMARK 3 ALL THE CONFORMERS PRESENT SIMULTANEOUSLY AND WITH THE POTENTIAL REMARK 3 ENERGY REMARK 3 TERMS CORRESPONDING TO INTERACTIONS BETWEEN THE DIFFERENT REMARK 3 CONFORMERS REMARK 3 EXCLUDED. THE HELIX AND SHEET RECORDS WERE CALCULATED USING REMARK 3 COORDINATES REMARK 3 FROM THE FIRST CONFORMER ONLY. THE STRUCTURE VISUALIZATION PROGRAM REMARK 3 PYMOL IS WELL-SUITED FOR DIRECTLY VIEWING THE ENSEMBLE MODEL REMARK 3 PRESENTED IN THIS PDB FILE. REMARK 4 REMARK 4 2Q3R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RE-REFINEMENT USING REMARK 200 ENSEMBLE MODEL REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1VJI REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 1VJI. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.66700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.66700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.34400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.03300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.34400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.03300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.66700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.34400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.03300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.66700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.34400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.03300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 MET A 1 REMARK 465 1 GLU A 2 REMARK 465 1 ASN A 3 REMARK 465 1 GLY A 4 REMARK 465 1 GLU A 5 REMARK 465 1 ALA A 6 REMARK 465 1 LYS A 7 REMARK 465 1 GLN A 8 REMARK 465 1 LYS A 277 REMARK 465 1 THR A 278 REMARK 465 1 MET A 279 REMARK 465 1 GLY A 280 REMARK 465 1 GLU A 281 REMARK 465 1 VAL A 282 REMARK 465 1 HIS A 283 REMARK 465 1 ALA A 284 REMARK 465 1 CYS A 285 REMARK 465 1 PRO A 286 REMARK 465 1 SER A 370 REMARK 465 1 THR A 371 REMARK 465 1 ALA A 372 REMARK 465 2 MET A 1 REMARK 465 2 GLU A 2 REMARK 465 2 ASN A 3 REMARK 465 2 GLY A 4 REMARK 465 2 GLU A 5 REMARK 465 2 ALA A 6 REMARK 465 2 LYS A 7 REMARK 465 2 GLN A 8 REMARK 465 2 LYS A 277 REMARK 465 2 THR A 278 REMARK 465 2 MET A 279 REMARK 465 2 GLY A 280 REMARK 465 2 GLU A 281 REMARK 465 2 VAL A 282 REMARK 465 2 HIS A 283 REMARK 465 2 ALA A 284 REMARK 465 2 CYS A 285 REMARK 465 2 PRO A 286 REMARK 465 2 SER A 370 REMARK 465 2 THR A 371 REMARK 465 2 ALA A 372 REMARK 465 3 MET A 1 REMARK 465 3 GLU A 2 REMARK 465 3 ASN A 3 REMARK 465 3 GLY A 4 REMARK 465 3 GLU A 5 REMARK 465 3 ALA A 6 REMARK 465 3 LYS A 7 REMARK 465 3 GLN A 8 REMARK 465 3 LYS A 277 REMARK 465 3 THR A 278 REMARK 465 3 MET A 279 REMARK 465 3 GLY A 280 REMARK 465 3 GLU A 281 REMARK 465 3 VAL A 282 REMARK 465 3 HIS A 283 REMARK 465 3 ALA A 284 REMARK 465 3 CYS A 285 REMARK 465 3 PRO A 286 REMARK 465 3 SER A 370 REMARK 465 3 THR A 371 REMARK 465 3 ALA A 372 REMARK 465 4 MET A 1 REMARK 465 4 GLU A 2 REMARK 465 4 ASN A 3 REMARK 465 4 GLY A 4 REMARK 465 4 GLU A 5 REMARK 465 4 ALA A 6 REMARK 465 4 LYS A 7 REMARK 465 4 GLN A 8 REMARK 465 4 LYS A 277 REMARK 465 4 THR A 278 REMARK 465 4 MET A 279 REMARK 465 4 GLY A 280 REMARK 465 4 GLU A 281 REMARK 465 4 VAL A 282 REMARK 465 4 HIS A 283 REMARK 465 4 ALA A 284 REMARK 465 4 CYS A 285 REMARK 465 4 PRO A 286 REMARK 465 4 SER A 370 REMARK 465 4 THR A 371 REMARK 465 4 ALA A 372 REMARK 465 5 MET A 1 REMARK 465 5 GLU A 2 REMARK 465 5 ASN A 3 REMARK 465 5 GLY A 4 REMARK 465 5 GLU A 5 REMARK 465 5 ALA A 6 REMARK 465 5 LYS A 7 REMARK 465 5 GLN A 8 REMARK 465 5 LYS A 277 REMARK 465 5 THR A 278 REMARK 465 5 MET A 279 REMARK 465 5 GLY A 280 REMARK 465 5 GLU A 281 REMARK 465 5 VAL A 282 REMARK 465 5 HIS A 283 REMARK 465 5 ALA A 284 REMARK 465 5 CYS A 285 REMARK 465 5 PRO A 286 REMARK 465 5 SER A 370 REMARK 465 5 THR A 371 REMARK 465 5 ALA A 372 REMARK 465 6 MET A 1 REMARK 465 6 GLU A 2 REMARK 465 6 ASN A 3 REMARK 465 6 GLY A 4 REMARK 465 6 GLU A 5 REMARK 465 6 ALA A 6 REMARK 465 6 LYS A 7 REMARK 465 6 GLN A 8 REMARK 465 6 LYS A 277 REMARK 465 6 THR A 278 REMARK 465 6 MET A 279 REMARK 465 6 GLY A 280 REMARK 465 6 GLU A 281 REMARK 465 6 VAL A 282 REMARK 465 6 HIS A 283 REMARK 465 6 ALA A 284 REMARK 465 6 CYS A 285 REMARK 465 6 PRO A 286 REMARK 465 6 SER A 370 REMARK 465 6 THR A 371 REMARK 465 6 ALA A 372 REMARK 465 7 MET A 1 REMARK 465 7 GLU A 2 REMARK 465 7 ASN A 3 REMARK 465 7 GLY A 4 REMARK 465 7 GLU A 5 REMARK 465 7 ALA A 6 REMARK 465 7 LYS A 7 REMARK 465 7 GLN A 8 REMARK 465 7 LYS A 277 REMARK 465 7 THR A 278 REMARK 465 7 MET A 279 REMARK 465 7 GLY A 280 REMARK 465 7 GLU A 281 REMARK 465 7 VAL A 282 REMARK 465 7 HIS A 283 REMARK 465 7 ALA A 284 REMARK 465 7 CYS A 285 REMARK 465 7 PRO A 286 REMARK 465 7 SER A 370 REMARK 465 7 THR A 371 REMARK 465 7 ALA A 372 REMARK 465 8 MET A 1 REMARK 465 8 GLU A 2 REMARK 465 8 ASN A 3 REMARK 465 8 GLY A 4 REMARK 465 8 GLU A 5 REMARK 465 8 ALA A 6 REMARK 465 8 LYS A 7 REMARK 465 8 GLN A 8 REMARK 465 8 LYS A 277 REMARK 465 8 THR A 278 REMARK 465 8 MET A 279 REMARK 465 8 GLY A 280 REMARK 465 8 GLU A 281 REMARK 465 8 VAL A 282 REMARK 465 8 HIS A 283 REMARK 465 8 ALA A 284 REMARK 465 8 CYS A 285 REMARK 465 8 PRO A 286 REMARK 465 8 SER A 370 REMARK 465 8 THR A 371 REMARK 465 8 ALA A 372 REMARK 465 9 MET A 1 REMARK 465 9 GLU A 2 REMARK 465 9 ASN A 3 REMARK 465 9 GLY A 4 REMARK 465 9 GLU A 5 REMARK 465 9 ALA A 6 REMARK 465 9 LYS A 7 REMARK 465 9 GLN A 8 REMARK 465 9 LYS A 277 REMARK 465 9 THR A 278 REMARK 465 9 MET A 279 REMARK 465 9 GLY A 280 REMARK 465 9 GLU A 281 REMARK 465 9 VAL A 282 REMARK 465 9 HIS A 283 REMARK 465 9 ALA A 284 REMARK 465 9 CYS A 285 REMARK 465 9 PRO A 286 REMARK 465 9 SER A 370 REMARK 465 9 THR A 371 REMARK 465 9 ALA A 372 REMARK 465 10 MET A 1 REMARK 465 10 GLU A 2 REMARK 465 10 ASN A 3 REMARK 465 10 GLY A 4 REMARK 465 10 GLU A 5 REMARK 465 10 ALA A 6 REMARK 465 10 LYS A 7 REMARK 465 10 GLN A 8 REMARK 465 10 LYS A 277 REMARK 465 10 THR A 278 REMARK 465 10 MET A 279 REMARK 465 10 GLY A 280 REMARK 465 10 GLU A 281 REMARK 465 10 VAL A 282 REMARK 465 10 HIS A 283 REMARK 465 10 ALA A 284 REMARK 465 10 CYS A 285 REMARK 465 10 PRO A 286 REMARK 465 10 SER A 370 REMARK 465 10 THR A 371 REMARK 465 10 ALA A 372 REMARK 465 11 MET A 1 REMARK 465 11 GLU A 2 REMARK 465 11 ASN A 3 REMARK 465 11 GLY A 4 REMARK 465 11 GLU A 5 REMARK 465 11 ALA A 6 REMARK 465 11 LYS A 7 REMARK 465 11 GLN A 8 REMARK 465 11 LYS A 277 REMARK 465 11 THR A 278 REMARK 465 11 MET A 279 REMARK 465 11 GLY A 280 REMARK 465 11 GLU A 281 REMARK 465 11 VAL A 282 REMARK 465 11 HIS A 283 REMARK 465 11 ALA A 284 REMARK 465 11 CYS A 285 REMARK 465 11 PRO A 286 REMARK 465 11 SER A 370 REMARK 465 11 THR A 371 REMARK 465 11 ALA A 372 REMARK 465 12 MET A 1 REMARK 465 12 GLU A 2 REMARK 465 12 ASN A 3 REMARK 465 12 GLY A 4 REMARK 465 12 GLU A 5 REMARK 465 12 ALA A 6 REMARK 465 12 LYS A 7 REMARK 465 12 GLN A 8 REMARK 465 12 LYS A 277 REMARK 465 12 THR A 278 REMARK 465 12 MET A 279 REMARK 465 12 GLY A 280 REMARK 465 12 GLU A 281 REMARK 465 12 VAL A 282 REMARK 465 12 HIS A 283 REMARK 465 12 ALA A 284 REMARK 465 12 CYS A 285 REMARK 465 12 PRO A 286 REMARK 465 12 SER A 370 REMARK 465 12 THR A 371 REMARK 465 12 ALA A 372 REMARK 465 13 MET A 1 REMARK 465 13 GLU A 2 REMARK 465 13 ASN A 3 REMARK 465 13 GLY A 4 REMARK 465 13 GLU A 5 REMARK 465 13 ALA A 6 REMARK 465 13 LYS A 7 REMARK 465 13 GLN A 8 REMARK 465 13 LYS A 277 REMARK 465 13 THR A 278 REMARK 465 13 MET A 279 REMARK 465 13 GLY A 280 REMARK 465 13 GLU A 281 REMARK 465 13 VAL A 282 REMARK 465 13 HIS A 283 REMARK 465 13 ALA A 284 REMARK 465 13 CYS A 285 REMARK 465 13 PRO A 286 REMARK 465 13 SER A 370 REMARK 465 13 THR A 371 REMARK 465 13 ALA A 372 REMARK 465 14 MET A 1 REMARK 465 14 GLU A 2 REMARK 465 14 ASN A 3 REMARK 465 14 GLY A 4 REMARK 465 14 GLU A 5 REMARK 465 14 ALA A 6 REMARK 465 14 LYS A 7 REMARK 465 14 GLN A 8 REMARK 465 14 LYS A 277 REMARK 465 14 THR A 278 REMARK 465 14 MET A 279 REMARK 465 14 GLY A 280 REMARK 465 14 GLU A 281 REMARK 465 14 VAL A 282 REMARK 465 14 HIS A 283 REMARK 465 14 ALA A 284 REMARK 465 14 CYS A 285 REMARK 465 14 PRO A 286 REMARK 465 14 SER A 370 REMARK 465 14 THR A 371 REMARK 465 14 ALA A 372 REMARK 465 15 MET A 1 REMARK 465 15 GLU A 2 REMARK 465 15 ASN A 3 REMARK 465 15 GLY A 4 REMARK 465 15 GLU A 5 REMARK 465 15 ALA A 6 REMARK 465 15 LYS A 7 REMARK 465 15 GLN A 8 REMARK 465 15 LYS A 277 REMARK 465 15 THR A 278 REMARK 465 15 MET A 279 REMARK 465 15 GLY A 280 REMARK 465 15 GLU A 281 REMARK 465 15 VAL A 282 REMARK 465 15 HIS A 283 REMARK 465 15 ALA A 284 REMARK 465 15 CYS A 285 REMARK 465 15 PRO A 286 REMARK 465 15 SER A 370 REMARK 465 15 THR A 371 REMARK 465 15 ALA A 372 REMARK 465 16 MET A 1 REMARK 465 16 GLU A 2 REMARK 465 16 ASN A 3 REMARK 465 16 GLY A 4 REMARK 465 16 GLU A 5 REMARK 465 16 ALA A 6 REMARK 465 16 LYS A 7 REMARK 465 16 GLN A 8 REMARK 465 16 LYS A 277 REMARK 465 16 THR A 278 REMARK 465 16 MET A 279 REMARK 465 16 GLY A 280 REMARK 465 16 GLU A 281 REMARK 465 16 VAL A 282 REMARK 465 16 HIS A 283 REMARK 465 16 ALA A 284 REMARK 465 16 CYS A 285 REMARK 465 16 PRO A 286 REMARK 465 16 SER A 370 REMARK 465 16 THR A 371 REMARK 465 16 ALA A 372 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 20 8.09 -171.52 REMARK 500 1 SER A 37 72.73 -101.94 REMARK 500 1 TYR A 38 122.64 -37.56 REMARK 500 1 ASN A 40 12.35 85.92 REMARK 500 1 PRO A 56 106.21 -53.24 REMARK 500 1 TYR A 74 -153.93 -155.15 REMARK 500 1 HIS A 109 116.22 -173.87 REMARK 500 1 ARG A 112 0.08 -67.87 REMARK 500 1 SER A 114 -168.17 -162.51 REMARK 500 1 ASN A 121 16.29 52.31 REMARK 500 1 SER A 139 -137.76 -68.01 REMARK 500 1 ILE A 142 -159.86 -115.04 REMARK 500 1 ILE A 155 -9.36 -55.20 REMARK 500 1 ALA A 185 -168.23 -124.04 REMARK 500 1 ASN A 186 73.65 40.77 REMARK 500 1 ASP A 203 -154.97 -110.40 REMARK 500 1 GLN A 210 -71.82 -53.90 REMARK 500 1 ALA A 274 -167.89 -75.06 REMARK 500 1 THR A 288 -88.05 -89.24 REMARK 500 1 THR A 307 -130.86 -145.96 REMARK 500 1 ARG A 308 -89.76 -82.07 REMARK 500 1 ASN A 332 89.32 -151.27 REMARK 500 1 ASP A 334 72.89 -106.32 REMARK 500 1 PHE A 339 -2.89 -56.00 REMARK 500 1 VAL A 341 69.29 -107.53 REMARK 500 1 ASP A 342 91.56 -7.52 REMARK 500 1 PRO A 344 -174.04 -65.68 REMARK 500 1 LEU A 368 -85.36 -49.54 REMARK 500 2 SER A 37 74.11 -103.83 REMARK 500 2 ASP A 76 56.92 30.23 REMARK 500 2 ILE A 80 39.95 -145.93 REMARK 500 2 SER A 114 -170.91 -179.32 REMARK 500 2 LYS A 123 -179.15 -68.34 REMARK 500 2 MET A 134 55.40 39.05 REMARK 500 2 PRO A 149 141.05 -34.40 REMARK 500 2 LEU A 153 139.43 -39.30 REMARK 500 2 GLU A 204 20.37 -75.93 REMARK 500 2 TYR A 256 -73.35 -61.10 REMARK 500 2 ALA A 274 -71.32 -60.44 REMARK 500 2 ARG A 275 77.41 -156.75 REMARK 500 2 THR A 288 -95.41 -159.14 REMARK 500 2 MET A 290 -48.55 -156.95 REMARK 500 2 ASN A 332 84.74 -156.24 REMARK 500 2 PHE A 339 -4.23 -57.24 REMARK 500 2 ASP A 342 2.29 53.95 REMARK 500 2 TYR A 362 -74.96 -122.02 REMARK 500 2 LEU A 368 98.47 -46.36 REMARK 500 3 VAL A 10 105.68 -34.79 REMARK 500 3 PRO A 11 -36.74 -36.87 REMARK 500 3 PRO A 15 165.41 -49.94 REMARK 500 REMARK 500 THIS ENTRY HAS 343 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 373 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.3073 RELATED DB: TARGETDB REMARK 900 RELATED ID: 1VJI RELATED DB: PDB REMARK 900 ORIGINAL REFINEMENT BASED ON SAME DATA AND R-FREE SET. DBREF 2Q3R A 1 372 UNP Q8LAH7 OPR1_ARATH 1 372 SEQRES 1 A 372 MET GLU ASN GLY GLU ALA LYS GLN SER VAL PRO LEU LEU SEQRES 2 A 372 THR PRO TYR LYS MET GLY ARG PHE ASN LEU SER HIS ARG SEQRES 3 A 372 VAL VAL LEU ALA PRO LEU THR ARG GLN ARG SER TYR GLY SEQRES 4 A 372 ASN VAL PRO GLN PRO HIS ALA ALA ILE TYR TYR SER GLN SEQRES 5 A 372 ARG THR THR PRO GLY GLY PHE LEU ILE THR GLU ALA THR SEQRES 6 A 372 GLY VAL SER ASP THR ALA GLN GLY TYR GLN ASP THR PRO SEQRES 7 A 372 GLY ILE TRP THR LYS GLU HIS VAL GLU ALA TRP LYS PRO SEQRES 8 A 372 ILE VAL ASP ALA VAL HIS ALA LYS GLY GLY ILE PHE PHE SEQRES 9 A 372 CYS GLN ILE TRP HIS VAL GLY ARG VAL SER ASN SER GLY SEQRES 10 A 372 PHE GLN PRO ASN GLY LYS ALA PRO ILE SER CYS SER ASP SEQRES 11 A 372 LYS PRO LEU MET PRO GLN ILE ARG SER ASN GLY ILE ASP SEQRES 12 A 372 GLU ALA LEU PHE THR PRO PRO ARG ARG LEU GLY ILE GLU SEQRES 13 A 372 GLU ILE PRO GLY ILE VAL ASN ASP PHE ARG LEU ALA ALA SEQRES 14 A 372 ARG ASN ALA MET GLU ALA GLY PHE ASP GLY VAL GLU ILE SEQRES 15 A 372 HIS GLY ALA ASN GLY TYR LEU ILE ASP GLN PHE MET LYS SEQRES 16 A 372 ASP THR VAL ASN ASP ARG THR ASP GLU TYR GLY GLY SER SEQRES 17 A 372 LEU GLN ASN ARG CYS LYS PHE PRO LEU GLU ILE VAL ASP SEQRES 18 A 372 ALA VAL ALA LYS GLU ILE GLY PRO ASP ARG VAL GLY ILE SEQRES 19 A 372 ARG LEU SER PRO PHE ALA ASP TYR MET GLU SER GLY ASP SEQRES 20 A 372 THR ASN PRO GLY ALA LEU GLY LEU TYR MET ALA GLU SER SEQRES 21 A 372 LEU ASN LYS TYR GLY ILE LEU TYR CYS HIS VAL ILE GLU SEQRES 22 A 372 ALA ARG MET LYS THR MET GLY GLU VAL HIS ALA CYS PRO SEQRES 23 A 372 HIS THR LEU MET PRO MET ARG LYS ALA PHE LYS GLY THR SEQRES 24 A 372 PHE ILE SER ALA GLY GLY PHE THR ARG GLU ASP GLY ASN SEQRES 25 A 372 GLU ALA VAL SER LYS GLY ARG THR ASP LEU VAL ALA TYR SEQRES 26 A 372 GLY ARG TRP PHE LEU ALA ASN PRO ASP LEU PRO LYS ARG SEQRES 27 A 372 PHE GLN VAL ASP ALA PRO LEU ASN LYS TYR ASP ARG PRO SEQRES 28 A 372 THR PHE TYR THR SER ASP PRO VAL VAL GLY TYR THR ASP SEQRES 29 A 372 TYR PRO PHE LEU GLU SER THR ALA HET FMN A 373 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 HOH *107(H2 O) HELIX 1 1 VAL A 10 THR A 14 5 5 HELIX 2 2 SER A 37 VAL A 41 5 5 HELIX 3 3 GLN A 43 ARG A 53 1 11 HELIX 4 4 THR A 82 ALA A 98 1 17 HELIX 5 5 GLN A 119 LYS A 123 5 5 HELIX 6 6 GLU A 157 GLY A 176 1 20 HELIX 7 7 TYR A 188 LYS A 195 1 8 HELIX 8 8 SER A 208 GLY A 228 1 21 HELIX 9 9 ASN A 249 GLY A 265 1 17 HELIX 10 10 LEU A 289 PHE A 296 1 8 HELIX 11 11 ARG A 308 LYS A 317 1 10 HELIX 12 12 GLY A 326 ALA A 331 1 6 HELIX 13 13 ASP A 334 PHE A 339 1 6 HELIX 14 14 ASP A 349 TYR A 354 1 6 SHEET 1 A 2 TYR A 16 MET A 18 0 SHEET 2 A 2 PHE A 21 LEU A 23 -1 N PHE A 21 O MET A 18 SHEET 1 B10 THR A 65 GLY A 66 0 SHEET 2 B10 ILE A 102 TRP A 108 1 O GLN A 106 N THR A 65 SHEET 3 B10 GLY A 179 GLY A 184 1 O GLU A 181 N ILE A 107 SHEET 4 B10 VAL A 232 LEU A 236 1 O ARG A 235 N ILE A 182 SHEET 5 B10 TYR A 268 ILE A 272 1 O HIS A 270 N ILE A 234 SHEET 6 B10 THR A 299 ALA A 303 1 O ILE A 301 N CYS A 269 SHEET 7 B10 LEU A 322 TYR A 325 1 O ALA A 324 N SER A 302 SHEET 8 B10 VAL A 27 LEU A 29 1 N VAL A 28 O VAL A 323 SHEET 9 B10 PHE A 59 ILE A 61 1 O ILE A 61 N LEU A 29 SHEET 10 B10 ILE A 102 TRP A 108 1 O PHE A 104 N LEU A 60 SHEET 1 C 2 ILE A 126 SER A 127 0 SHEET 2 C 2 ARG A 151 ARG A 152 1 O ARG A 151 N SER A 127 SITE 1 AC1 17 ALA A 30 PRO A 31 LEU A 32 THR A 33 SITE 2 AC1 17 ALA A 64 GLN A 106 HIS A 183 ARG A 235 SITE 3 AC1 17 ALA A 303 GLY A 304 GLY A 305 GLY A 326 SITE 4 AC1 17 ARG A 327 PHE A 353 TYR A 354 HOH A 387 SITE 5 AC1 17 HOH A 433 CRYST1 46.688 88.066 149.334 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021419 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006696 0.00000 MODEL 1