HEADER ELECTRON TRANSPORT 30-MAY-07 2Q3W TITLE ENSEMBLE REFINEMENT OF THE PROTEIN CRYSTAL STRUCTURE OF THE CYS84ALA TITLE 2 CYS85ALA DOUBLE MUTANT OF THE [2FE-2S] FERREDOXIN SUBUNIT OF TOLUENE- TITLE 3 4-MONOOXYGENASE FROM PSEUDOMONAS MENDOCINA KR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLUENE-4-MONOOXYGENASE SYSTEM FERREDOXIN SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN C; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS MENDOCINA; SOURCE 3 ORGANISM_TAXID: 300; SOURCE 4 STRAIN: KR1; SOURCE 5 GENE: TMOC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT4CD15BTET(C84AC85A) KEYWDS ENSEMBLE REFINEMENT, REFINEMENT METHODOLOGY DEVELOPMENT, FERREDOXIN, KEYWDS 2 FES, [2FE-2S] CLUSTER, RIESKE PROTEIN, TOLUENE-4-MONOOXYGENASE KEYWDS 3 SUBUNIT, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 4 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION NUMMDL 8 AUTHOR E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 6 30-AUG-23 2Q3W 1 REMARK REVDAT 5 20-OCT-21 2Q3W 1 REMARK SEQADV LINK REVDAT 4 10-AUG-11 2Q3W 1 REMARK REVDAT 3 24-FEB-09 2Q3W 1 VERSN REVDAT 2 02-OCT-07 2Q3W 1 JRNL REVDAT 1 19-JUN-07 2Q3W 0 JRNL AUTH E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JRNL TITL ENSEMBLE REFINEMENT OF PROTEIN CRYSTAL STRUCTURES: JRNL TITL 2 VALIDATION AND APPLICATION. JRNL REF STRUCTURE V. 15 1040 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850744 JRNL DOI 10.1016/J.STR.2007.06.019 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.A.MOE,C.A.BINGMAN,G.E.WESENBERG,G.N.PHILLIPS JR.,B.G.FOX REMARK 1 TITL STRUCTURE OF T4MOC, THE RIESKE-TYPE FERREDOXIN COMPONENT OF REMARK 1 TITL 2 TOLUENE 4-MONOOXYGENASE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 62 476 2006 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 16627939 REMARK 1 DOI 10.1107/S0907444906006056 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD USING AMPLITUDES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1803722.375 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 16598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 838 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2534 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 137 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 835 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.11 REMARK 3 ESD FROM SIGMAA (A) : -0.0 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.03 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.230 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.870 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.460 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.440 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 48.89 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : EDO.PARAM REMARK 3 PARAMETER FILE 5 : FES_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS PDB ENTRY IS A RE-REFINEMENT USING AN ENSEMBLE MODEL OF THE REMARK 3 PREVIOUSLY REMARK 3 DEPOSITED SINGLE-CONFORMER STRUCTURE 1VM9 AND REMARK 3 THE FIRST DATA SET IN THE DEPOSITED STRUCTURE FACTOR FILE REMARK 3 FOR 1VM9 ALONG WITH THE R-FREE SET DEFINED THEREIN. THE COORDINATES REMARK 3 WERE GENERATED BY AN AUTOMATED PROTOCOL FROM AN INITIAL MODEL REMARK 3 CONSISTING REMARK 3 OF 8 IDENTICAL COPIES OF THE PROTEIN AND NON-WATER REMARK 3 HETERO-ATOMS ASSIGNED FRACTIONAL OCCUPANCIES ADDING UP TO ONE, AND REMARK 3 A REMARK 3 SINGLE COPY OF THE SOLVENT MOLECULES. REFINEMENT WAS CARRIED OUT REMARK 3 WITH REMARK 3 ALL THE CONFORMERS PRESENT SIMULTANEOUSLY AND WITH THE POTENTIAL REMARK 3 ENERGY REMARK 3 TERMS CORRESPONDING TO INTERACTIONS BETWEEN THE DIFFERENT REMARK 3 CONFORMERS REMARK 3 EXCLUDED. THE HELIX AND SHEET RECORDS WERE CALCULATED USING REMARK 3 COORDINATES REMARK 3 FROM THE FIRST CONFORMER ONLY. THE STRUCTURE VISUALIZATION PROGRAM REMARK 3 PYMOL IS WELL-SUITED FOR DIRECTLY VIEWING THE ENSEMBLE MODEL REMARK 3 PRESENTED IN THIS PDB FILE. REMARK 4 REMARK 4 2Q3W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RE-REFINEMENT USING REMARK 200 ENSEMBLE MODEL REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1VM9 REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 1VM9. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.77800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.77800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.25500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.25500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.77800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.25500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.20000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.77800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.25500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 26.20000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 HIS A 111 REMARK 465 1 SER A 112 REMARK 465 2 HIS A 111 REMARK 465 2 SER A 112 REMARK 465 3 HIS A 111 REMARK 465 3 SER A 112 REMARK 465 4 HIS A 111 REMARK 465 4 SER A 112 REMARK 465 5 HIS A 111 REMARK 465 5 SER A 112 REMARK 465 6 HIS A 111 REMARK 465 6 SER A 112 REMARK 465 7 HIS A 111 REMARK 465 7 SER A 112 REMARK 465 8 HIS A 111 REMARK 465 8 SER A 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 66 -94.99 -78.57 REMARK 500 2 CYS A 7 -174.71 -170.95 REMARK 500 2 THR A 22 -146.54 -90.55 REMARK 500 2 ALA A 40 119.26 -163.18 REMARK 500 2 ILE A 79 -60.83 -103.52 REMARK 500 2 LYS A 94 114.06 -26.76 REMARK 500 3 CYS A 7 -163.85 -161.09 REMARK 500 3 GLN A 42 156.04 -45.34 REMARK 500 3 GLU A 49 61.59 -65.99 REMARK 500 3 ALA A 85 114.42 -161.85 REMARK 500 4 ILE A 12 114.05 -163.43 REMARK 500 5 ILE A 12 117.54 -161.44 REMARK 500 5 GLU A 49 80.49 -67.56 REMARK 500 5 HIS A 67 16.82 -142.89 REMARK 500 5 ILE A 79 -69.23 -108.53 REMARK 500 6 CYS A 7 178.56 171.42 REMARK 500 6 ILE A 79 -64.89 -103.93 REMARK 500 7 GLU A 58 144.78 -170.17 REMARK 500 7 HIS A 67 15.38 -142.89 REMARK 500 7 ILE A 79 -61.09 -104.58 REMARK 500 8 CYS A 7 -178.94 -177.02 REMARK 500 8 ILE A 79 -76.73 -112.42 REMARK 500 8 ALA A 85 148.23 -172.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 TYR A 41 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 900 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 45 SG REMARK 620 2 FES A 900 S1 115.4 REMARK 620 3 FES A 900 S2 122.0 98.0 REMARK 620 4 CYS A 64 SG 114.8 94.6 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 900 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 ND1 REMARK 620 2 FES A 900 S1 116.0 REMARK 620 3 FES A 900 S2 130.4 92.9 REMARK 620 4 HIS A 67 ND1 82.8 100.6 132.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 53 O REMARK 620 2 HOH A 903 O 98.6 REMARK 620 3 HOH A 904 O 160.3 98.9 REMARK 620 4 HOH A 905 O 92.3 94.7 95.2 REMARK 620 5 HOH A 906 O 82.1 179.3 80.4 85.2 REMARK 620 6 HOH A 907 O 82.3 98.3 86.2 166.5 81.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 96 OD2 REMARK 620 2 HOH A 908 O 88.4 REMARK 620 3 HOH A 909 O 89.2 176.9 REMARK 620 4 HOH A 910 O 160.4 82.8 98.8 REMARK 620 5 HOH A 911 O 76.2 80.4 97.1 85.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.34660 RELATED DB: TARGETDB REMARK 900 RELATED ID: 1VM9 RELATED DB: PDB REMARK 900 ORIGINAL REFINEMENT BASED ON SAME DATA AND R-FREE SET. DBREF 2Q3W A 2 112 UNP Q00458 TMOC_PSEME 2 112 SEQADV 2Q3W ALA A 84 UNP Q00458 CYS 84 ENGINEERED MUTATION SEQADV 2Q3W ALA A 85 UNP Q00458 CYS 85 ENGINEERED MUTATION SEQRES 1 A 111 SER PHE GLU LYS ILE CYS SER LEU ASP ASP ILE TRP VAL SEQRES 2 A 111 GLY GLU MET GLU THR PHE GLU THR SER ASP GLY THR GLU SEQRES 3 A 111 VAL LEU ILE VAL ASN SER GLU GLU HIS GLY VAL LYS ALA SEQRES 4 A 111 TYR GLN ALA MET CYS PRO HIS GLN GLU ILE LEU LEU SER SEQRES 5 A 111 GLU GLY SER TYR GLU GLY GLY VAL ILE THR CYS ARG ALA SEQRES 6 A 111 HIS LEU TRP THR PHE ASN ASP GLY THR GLY HIS GLY ILE SEQRES 7 A 111 ASN PRO ASP ASP ALA ALA LEU ALA GLU TYR PRO VAL GLU SEQRES 8 A 111 VAL LYS GLY ASP ASP ILE TYR VAL SER THR LYS GLY ILE SEQRES 9 A 111 LEU PRO ASN LYS ALA HIS SER HET MG A 901 1 HET MG A 902 1 HET FES A 900 4 HET EDO A 801 4 HET EDO A 802 4 HET EDO A 803 4 HETNAM MG MAGNESIUM ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG 2(MG 2+) FORMUL 4 FES FE2 S2 FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *133(H2 O) HELIX 1 1 ASP A 10 ILE A 12 5 3 HELIX 2 2 LEU A 51 GLY A 55 5 5 SHEET 1 A 3 GLU A 4 SER A 8 0 SHEET 2 A 3 ASP A 97 VAL A 100 -1 O ILE A 98 N ILE A 6 SHEET 3 A 3 VAL A 91 LYS A 94 -1 N GLU A 92 O TYR A 99 SHEET 1 B 3 GLU A 16 GLU A 21 0 SHEET 2 B 3 GLU A 27 SER A 33 -1 O ILE A 30 N GLU A 18 SHEET 3 B 3 GLY A 37 GLN A 42 -1 O LYS A 39 N VAL A 31 SHEET 1 C 3 SER A 56 GLU A 58 0 SHEET 2 C 3 VAL A 61 THR A 63 -1 O VAL A 61 N GLU A 58 SHEET 3 C 3 THR A 70 ASN A 72 -1 O PHE A 71 N ILE A 62 LINK SG CYS A 45 FE1 FES A 900 1555 1555 2.52 LINK ND1 HIS A 47 FE2 FES A 900 1555 1555 2.49 LINK O SER A 53 MG MG A 901 1555 1555 2.17 LINK SG CYS A 64 FE1 FES A 900 1555 1555 2.03 LINK ND1 HIS A 67 FE2 FES A 900 1555 1555 2.02 LINK OD2 ASP A 96 MG MG A 902 1555 1555 2.29 LINK MG MG A 901 O HOH A 903 1555 1555 2.31 LINK MG MG A 901 O HOH A 904 1555 1555 2.28 LINK MG MG A 901 O HOH A 905 1555 1555 2.28 LINK MG MG A 901 O HOH A 906 1555 1555 2.48 LINK MG MG A 901 O HOH A 907 1555 1555 2.21 LINK MG MG A 902 O HOH A 908 1555 1555 2.45 LINK MG MG A 902 O HOH A 909 1555 1555 2.13 LINK MG MG A 902 O HOH A 910 1555 1555 2.10 LINK MG MG A 902 O HOH A 911 1555 1555 2.42 CISPEP 1 ASN A 80 PRO A 81 1 -0.80 CISPEP 2 ASN A 80 PRO A 81 2 -0.63 CISPEP 3 ASN A 80 PRO A 81 3 -1.18 CISPEP 4 ASN A 80 PRO A 81 4 -0.38 CISPEP 5 ASN A 80 PRO A 81 5 -0.49 CISPEP 6 ASN A 80 PRO A 81 6 -0.51 CISPEP 7 ASN A 80 PRO A 81 7 0.03 CISPEP 8 ASN A 80 PRO A 81 8 -0.44 SITE 1 AC1 6 SER A 53 HOH A 903 HOH A 904 HOH A 905 SITE 2 AC1 6 HOH A 906 HOH A 907 SITE 1 AC2 7 ASP A 10 ASP A 96 ASP A 97 HOH A 908 SITE 2 AC2 7 HOH A 909 HOH A 910 HOH A 911 SITE 1 AC3 7 CYS A 45 HIS A 47 CYS A 64 ALA A 66 SITE 2 AC3 7 HIS A 67 LEU A 68 TRP A 69 SITE 1 AC4 3 SER A 56 ARG A 65 HOH A1006 SITE 1 AC5 3 TRP A 69 PRO A 81 ASP A 83 SITE 1 AC6 6 VAL A 14 ASN A 32 SER A 33 GLU A 34 SITE 2 AC6 6 GLY A 37 HOH A1016 CRYST1 44.510 52.400 83.556 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022467 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011968 0.00000 MODEL 1