HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAY-07 2Q44 TITLE ENSEMBLE REFINEMENT OF THE PROTEIN CRYSTAL STRUCTURE OF GENE PRODUCT TITLE 2 FROM ARABIDOPSIS THALIANA AT1G77540 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN AT1G77540; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 13-114; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: CV. COLUMBIA; SOURCE 6 GENE: AT1G77540, T5M16.13; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL834(DE3) PLACI+RARE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVP13-GW KEYWDS ENSEMBLE REFINEMENT, REFINEMENT METHODOLOGY DEVELOPMENT, AT1G77540, KEYWDS 2 PUTATIVE ACETYLTRANSFERASE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, KEYWDS 4 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION NUMMDL 2 AUTHOR E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 30-AUG-23 2Q44 1 REMARK SEQADV REVDAT 4 10-AUG-11 2Q44 1 REMARK REVDAT 3 24-FEB-09 2Q44 1 VERSN REVDAT 2 02-OCT-07 2Q44 1 JRNL REVDAT 1 19-JUN-07 2Q44 0 JRNL AUTH E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JRNL TITL ENSEMBLE REFINEMENT OF PROTEIN CRYSTAL STRUCTURES: JRNL TITL 2 VALIDATION AND APPLICATION. JRNL REF STRUCTURE V. 15 1040 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850744 JRNL DOI 10.1016/J.STR.2007.06.019 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.C.TYLER,E.BITTO,C.E.BERNDSEN,C.A.BINGMAN,S.SINGH,M.S.LEE, REMARK 1 AUTH 2 G.E.WESENBERG,J.M.DENU,G.N.PHILLIPS JR.,J.L.MARKLEY REMARK 1 TITL STRUCTURE OF ARABIDOPSIS THALIANA AT1G77540 PROTEIN, A REMARK 1 TITL 2 MINIMAL ACETYLTRANSFERASE FROM THE COG2388 FAMILY. REMARK 1 REF BIOCHEMISTRY V. 45 14325 2006 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 17128971 REMARK 1 DOI 10.1021/BI0612059 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD USING AMPLITUDES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 456143.750 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 32675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1658 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.22 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4326 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 237 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.10 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.13 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.085 REMARK 3 BOND ANGLES (DEGREES) : 5.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 4.550 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.560 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.150 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.990 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.390 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.44 REMARK 3 BSOL : 50.01 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS PDB ENTRY IS A RE-REFINEMENT USING AN ENSEMBLE MODEL OF THE REMARK 3 PREVIOUSLY REMARK 3 DEPOSITED SINGLE-CONFORMER STRUCTURE 1XMT AND REMARK 3 THE FIRST DATA SET IN THE DEPOSITED STRUCTURE FACTOR FILE REMARK 3 FOR 1XMT ALONG WITH THE R-FREE SET DEFINED THEREIN. THE COORDINATES REMARK 3 WERE GENERATED BY AN AUTOMATED PROTOCOL FROM AN INITIAL MODEL REMARK 3 CONSISTING REMARK 3 OF 2 IDENTICAL COPIES OF THE PROTEIN AND NON-WATER REMARK 3 HETERO-ATOMS ASSIGNED FRACTIONAL OCCUPANCIES ADDING UP TO ONE, AND REMARK 3 A REMARK 3 SINGLE COPY OF THE SOLVENT MOLECULES. REFINEMENT WAS CARRIED OUT REMARK 3 WITH REMARK 3 ALL THE CONFORMERS PRESENT SIMULTANEOUSLY AND WITH THE POTENTIAL REMARK 3 ENERGY REMARK 3 TERMS CORRESPONDING TO INTERACTIONS BETWEEN THE DIFFERENT REMARK 3 CONFORMERS REMARK 3 EXCLUDED. THE HELIX AND SHEET RECORDS WERE CALCULATED USING REMARK 3 COORDINATES REMARK 3 FROM THE FIRST CONFORMER ONLY. THE STRUCTURE VISUALIZATION PROGRAM REMARK 3 PYMOL IS WELL-SUITED FOR DIRECTLY VIEWING THE ENSEMBLE MODEL REMARK 3 PRESENTED IN THIS PDB FILE. REMARK 4 REMARK 4 2Q44 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RE-REFINEMENT USING REMARK 200 ENSEMBLE MODEL REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1XMT REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 1XMT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.30050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 SER A 1 REMARK 465 1 ALA A 2 REMARK 465 1 THR A 3 REMARK 465 1 GLU A 4 REMARK 465 1 LYS A 100 REMARK 465 1 SER A 101 REMARK 465 1 SER A 102 REMARK 465 1 ILE A 103 REMARK 465 2 SER A 1 REMARK 465 2 ALA A 2 REMARK 465 2 THR A 3 REMARK 465 2 GLU A 4 REMARK 465 2 LYS A 100 REMARK 465 2 SER A 101 REMARK 465 2 SER A 102 REMARK 465 2 ILE A 103 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 PRO A 5 CG PRO A 5 CD 0.192 REMARK 500 1 VAL A 9 CB VAL A 9 CG1 -0.181 REMARK 500 1 TRP A 10 CZ3 TRP A 10 CH2 -0.173 REMARK 500 1 GLY A 13 CA GLY A 13 C -0.096 REMARK 500 1 LYS A 14 CA LYS A 14 C 0.247 REMARK 500 1 ARG A 15 CZ ARG A 15 NH1 0.143 REMARK 500 1 ARG A 16 CB ARG A 16 CG -0.245 REMARK 500 1 ARG A 16 CG ARG A 16 CD 0.275 REMARK 500 1 ARG A 16 CZ ARG A 16 NH1 -0.096 REMARK 500 1 ARG A 16 CZ ARG A 16 NH2 0.138 REMARK 500 1 GLU A 18 CD GLU A 18 OE2 0.117 REMARK 500 1 GLU A 20 CG GLU A 20 CD 0.179 REMARK 500 1 ASP A 21 CG ASP A 21 OD2 0.210 REMARK 500 1 GLU A 23 CD GLU A 23 OE2 0.126 REMARK 500 1 GLU A 27 CB GLU A 27 CG -0.152 REMARK 500 1 GLU A 27 CD GLU A 27 OE1 0.123 REMARK 500 1 GLU A 27 CD GLU A 27 OE2 0.087 REMARK 500 1 TYR A 28 CG TYR A 28 CD1 0.132 REMARK 500 1 TYR A 28 CE1 TYR A 28 CZ 0.111 REMARK 500 1 TYR A 28 CZ TYR A 28 CE2 0.085 REMARK 500 1 LYS A 29 CD LYS A 29 CE 0.256 REMARK 500 1 MET A 30 CG MET A 30 SD -0.200 REMARK 500 1 MET A 30 SD MET A 30 CE -0.554 REMARK 500 1 ARG A 31 CB ARG A 31 CG 0.175 REMARK 500 1 ARG A 31 CG ARG A 31 CD 0.533 REMARK 500 1 ARG A 31 NE ARG A 31 CZ 0.136 REMARK 500 1 ARG A 31 CZ ARG A 31 NH2 0.092 REMARK 500 1 GLY A 34 C GLY A 34 O 0.141 REMARK 500 1 LYS A 35 CG LYS A 35 CD 0.242 REMARK 500 1 LYS A 35 CA LYS A 35 C -0.173 REMARK 500 1 LYS A 35 C LYS A 35 O -0.132 REMARK 500 1 VAL A 36 N VAL A 36 CA 0.147 REMARK 500 1 VAL A 36 CB VAL A 36 CG2 0.128 REMARK 500 1 ASP A 38 CG ASP A 38 OD2 0.304 REMARK 500 1 ASP A 38 C LEU A 39 N 0.164 REMARK 500 1 HIS A 41 C THR A 42 N -0.177 REMARK 500 1 TYR A 43 CB TYR A 43 CG -0.149 REMARK 500 1 TYR A 43 CZ TYR A 43 OH 0.123 REMARK 500 1 PRO A 45 N PRO A 45 CA 0.109 REMARK 500 1 SER A 46 CA SER A 46 CB -0.154 REMARK 500 1 SER A 46 CB SER A 46 OG -0.108 REMARK 500 1 PHE A 47 CB PHE A 47 CG -0.104 REMARK 500 1 PHE A 47 CD1 PHE A 47 CE1 0.165 REMARK 500 1 PHE A 47 CE2 PHE A 47 CD2 -0.168 REMARK 500 1 LYS A 48 CB LYS A 48 CG 0.221 REMARK 500 1 GLY A 50 CA GLY A 50 C -0.120 REMARK 500 1 SER A 67 CA SER A 67 CB 0.188 REMARK 500 1 SER A 69 C SER A 69 O 0.127 REMARK 500 1 ILE A 70 C ILE A 70 O 0.185 REMARK 500 1 SER A 71 CA SER A 71 CB -0.180 REMARK 500 REMARK 500 THIS ENTRY HAS 179 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PRO A 6 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 1 LYS A 7 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 1 TRP A 10 CG - CD1 - NE1 ANGL. DEV. = 6.2 DEGREES REMARK 500 1 GLU A 12 OE1 - CD - OE2 ANGL. DEV. = 8.6 DEGREES REMARK 500 1 LYS A 14 CD - CE - NZ ANGL. DEV. = -14.9 DEGREES REMARK 500 1 ARG A 16 CG - CD - NE ANGL. DEV. = 18.4 DEGREES REMARK 500 1 ARG A 16 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 PHE A 17 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 1 PHE A 17 CG - CD2 - CE2 ANGL. DEV. = -11.5 DEGREES REMARK 500 1 PHE A 17 CD1 - CE1 - CZ ANGL. DEV. = -10.0 DEGREES REMARK 500 1 GLU A 18 OE1 - CD - OE2 ANGL. DEV. = -9.7 DEGREES REMARK 500 1 ASP A 21 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 1 ASP A 21 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 1 HIS A 22 N - CA - CB ANGL. DEV. = 12.6 DEGREES REMARK 500 1 GLU A 23 OE1 - CD - OE2 ANGL. DEV. = 16.8 DEGREES REMARK 500 1 GLU A 23 CG - CD - OE2 ANGL. DEV. = -22.6 DEGREES REMARK 500 1 PHE A 25 CZ - CE2 - CD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 1 TYR A 28 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 1 TYR A 28 CG - CD2 - CE2 ANGL. DEV. = -7.2 DEGREES REMARK 500 1 TYR A 28 CZ - CE2 - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 1 ARG A 31 CD - NE - CZ ANGL. DEV. = -9.5 DEGREES REMARK 500 1 ARG A 31 NH1 - CZ - NH2 ANGL. DEV. = -17.1 DEGREES REMARK 500 1 ARG A 31 NE - CZ - NH2 ANGL. DEV. = 13.9 DEGREES REMARK 500 1 MET A 37 CG - SD - CE ANGL. DEV. = -16.7 DEGREES REMARK 500 1 ASP A 38 OD1 - CG - OD2 ANGL. DEV. = -19.3 DEGREES REMARK 500 1 ASP A 38 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 1 ASP A 38 CB - CG - OD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 1 LEU A 39 CA - C - O ANGL. DEV. = -17.6 DEGREES REMARK 500 1 LEU A 39 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 1 HIS A 41 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 1 PHE A 47 CB - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 1 PHE A 47 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 PHE A 47 CG - CD1 - CE1 ANGL. DEV. = -8.0 DEGREES REMARK 500 1 ARG A 49 CA - CB - CG ANGL. DEV. = -15.0 DEGREES REMARK 500 1 GLY A 50 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 1 GLU A 63 OE1 - CD - OE2 ANGL. DEV. = 12.4 DEGREES REMARK 500 1 ILE A 73 CG1 - CB - CG2 ANGL. DEV. = 17.4 DEGREES REMARK 500 1 PRO A 74 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 1 TYR A 78 CB - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 1 TYR A 78 CG - CD1 - CE1 ANGL. DEV. = 8.7 DEGREES REMARK 500 1 TYR A 78 CG - CD2 - CE2 ANGL. DEV. = -6.3 DEGREES REMARK 500 1 TYR A 78 CA - C - O ANGL. DEV. = 14.5 DEGREES REMARK 500 1 SER A 80 CA - CB - OG ANGL. DEV. = -17.9 DEGREES REMARK 500 1 SER A 80 CA - C - O ANGL. DEV. = -14.2 DEGREES REMARK 500 1 ASP A 81 OD1 - CG - OD2 ANGL. DEV. = -12.0 DEGREES REMARK 500 1 ASP A 81 CB - CG - OD2 ANGL. DEV. = 13.4 DEGREES REMARK 500 1 PHE A 83 CG - CD2 - CE2 ANGL. DEV. = 11.9 DEGREES REMARK 500 1 LEU A 84 CB - CG - CD1 ANGL. DEV. = -12.9 DEGREES REMARK 500 1 PRO A 85 O - C - N ANGL. DEV. = -12.2 DEGREES REMARK 500 1 PRO A 88 N - CA - CB ANGL. DEV. = -8.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 119 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 15 26.18 49.22 REMARK 500 1 HIS A 22 -6.05 75.45 REMARK 500 1 VAL A 79 -77.61 -59.00 REMARK 500 1 THR A 82 -50.36 -120.78 REMARK 500 2 CYS A 76 126.80 -35.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ASP A 21 0.11 SIDE CHAIN REMARK 500 1 ARG A 31 0.09 SIDE CHAIN REMARK 500 2 ARG A 31 0.08 SIDE CHAIN REMARK 500 2 ASP A 81 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 GLY A 13 -11.16 REMARK 500 1 LYS A 14 -10.12 REMARK 500 1 ARG A 15 12.90 REMARK 500 1 TYR A 28 -14.71 REMARK 500 1 MET A 30 10.60 REMARK 500 1 VAL A 79 14.18 REMARK 500 1 GLU A 97 10.52 REMARK 500 2 ILE A 8 -15.34 REMARK 500 2 ARG A 15 -10.17 REMARK 500 2 TYR A 28 13.10 REMARK 500 2 MET A 30 -10.21 REMARK 500 2 VAL A 79 -10.65 REMARK 500 2 THR A 82 -15.16 REMARK 500 2 LEU A 93 11.93 REMARK 500 2 VAL A 98 12.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.6042 RELATED DB: TARGETDB REMARK 900 RELATED ID: 1XMT RELATED DB: PDB REMARK 900 ORIGINAL REFINEMENT BASED ON SAME DATA AND R-FREE SET. DBREF 2Q44 A 2 103 UNP Q9CAQ2 Y1754_ARATH 13 114 SEQADV 2Q44 SER A 1 UNP Q9CAQ2 EXPRESSION TAG SEQRES 1 A 103 SER ALA THR GLU PRO PRO LYS ILE VAL TRP ASN GLU GLY SEQRES 2 A 103 LYS ARG ARG PHE GLU THR GLU ASP HIS GLU ALA PHE ILE SEQRES 3 A 103 GLU TYR LYS MET ARG ASN ASN GLY LYS VAL MET ASP LEU SEQRES 4 A 103 VAL HIS THR TYR VAL PRO SER PHE LYS ARG GLY LEU GLY SEQRES 5 A 103 LEU ALA SER HIS LEU CYS VAL ALA ALA PHE GLU HIS ALA SEQRES 6 A 103 SER SER HIS SER ILE SER ILE ILE PRO SER CYS SER TYR SEQRES 7 A 103 VAL SER ASP THR PHE LEU PRO ARG ASN PRO SER TRP LYS SEQRES 8 A 103 PRO LEU ILE HIS SER GLU VAL PHE LYS SER SER ILE HET BR A 200 1 HET BR A 201 1 HET BR A 202 1 HET BR A 203 1 HET BR A 204 1 HET BR A 205 1 HET BR A 206 1 HET BR A 207 1 HET BR A 208 1 HET BR A 209 1 HET BR A 210 1 HETNAM BR BROMIDE ION FORMUL 2 BR 11(BR 1-) FORMUL 13 HOH *125(H2 O) HELIX 1 1 PRO A 45 ARG A 49 5 5 HELIX 2 2 GLY A 52 HIS A 68 1 17 HELIX 3 3 CYS A 76 THR A 82 1 7 HELIX 4 4 THR A 82 ASN A 87 1 6 HELIX 5 5 PRO A 88 ILE A 94 5 7 SHEET 1 A 5 ILE A 8 ASN A 11 0 SHEET 2 A 5 ARG A 16 THR A 19 -1 O GLU A 18 N VAL A 9 SHEET 3 A 5 PHE A 25 ARG A 31 -1 O ILE A 26 N PHE A 17 SHEET 4 A 5 VAL A 36 TYR A 43 -1 O ASP A 38 N LYS A 29 SHEET 5 A 5 SER A 71 PRO A 74 1 O ILE A 73 N LEU A 39 SITE 1 AC1 2 THR A 19 LYS A 48 SITE 1 AC2 3 GLU A 20 ASP A 21 HOH A 243 SITE 1 AC3 3 MET A 30 ASN A 33 GLY A 34 SITE 1 AC4 3 ASN A 87 PRO A 88 SER A 89 SITE 1 AC5 5 SER A 55 TYR A 78 PHE A 83 HOH A 248 SITE 2 AC5 5 HOH A 278 SITE 1 AC6 2 ALA A 54 HOH A 240 SITE 1 AC7 4 GLY A 50 LEU A 51 GLY A 52 HOH A 239 SITE 1 AC8 3 TRP A 10 PRO A 88 LYS A 91 SITE 1 AC9 3 ARG A 15 MET A 30 HOH A 266 CRYST1 27.349 60.601 29.424 90.00 91.50 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036564 0.000000 0.000957 0.00000 SCALE2 0.000000 0.016501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.033998 0.00000 MODEL 1