HEADER OXIDOREDUCTASE 31-MAY-07 2Q45 TITLE ENSEMBLE REFINEMENT OF THE PROTEIN CRYSTAL STRUCTURE OF PUTATIVE TITLE 2 TROPINONE REDUCTASE FROM ARABIDOPSIS THALIANA GENE AT1G07440 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TROPINONE REDUCTASE HOMOLOG AT1G07440; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: CV. COLUMBIA; SOURCE 6 GENE: AT1G07440, F22G5_16, F22G5.20, F22G5.39; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: B834(DE3) P(LACI+RARE); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVP-13 (PQE DERIVATIVE) KEYWDS ENSEMBLE REFINEMENT, REFINEMENT METHODOLOGY DEVELOPMENT, AT1G07440, KEYWDS 2 REDUCTIVELY METHYLATED PROTEIN, PUTATIVE TROPINONE REDUCTASE, KEYWDS 3 STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR KEYWDS 4 EUKARYOTIC STRUCTURAL GENOMICS, CESG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION NUMMDL 8 AUTHOR E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 6 30-AUG-23 2Q45 1 REMARK REVDAT 5 10-AUG-11 2Q45 1 REMARK REVDAT 4 13-JUL-11 2Q45 1 VERSN REVDAT 3 24-FEB-09 2Q45 1 VERSN REVDAT 2 02-OCT-07 2Q45 1 JRNL REVDAT 1 19-JUN-07 2Q45 0 JRNL AUTH E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JRNL TITL ENSEMBLE REFINEMENT OF PROTEIN CRYSTAL STRUCTURES: JRNL TITL 2 VALIDATION AND APPLICATION. JRNL REF STRUCTURE V. 15 1040 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850744 JRNL DOI 10.1016/J.STR.2007.06.019 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD USING AMPLITUDES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 117821.039 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 14467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 729 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2233 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1632 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.59000 REMARK 3 B22 (A**2) : -1.56000 REMARK 3 B33 (A**2) : -4.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.05 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.670 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.370 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.030 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.710 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 54.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS PDB ENTRY IS A RE-REFINEMENT USING AN ENSEMBLE MODEL OF THE REMARK 3 PREVIOUSLY REMARK 3 DEPOSITED SINGLE-CONFORMER STRUCTURE 1XQ1 AND REMARK 3 THE FIRST DATA SET IN THE DEPOSITED STRUCTURE FACTOR FILE REMARK 3 FOR 1XQ1 ALONG WITH THE R-FREE SET DEFINED THEREIN. THE COORDINATES REMARK 3 WERE GENERATED BY AN AUTOMATED PROTOCOL FROM AN INITIAL MODEL REMARK 3 CONSISTING REMARK 3 OF 8 IDENTICAL COPIES OF THE PROTEIN AND NON-WATER REMARK 3 HETERO-ATOMS ASSIGNED FRACTIONAL OCCUPANCIES ADDING UP TO ONE, AND REMARK 3 A REMARK 3 SINGLE COPY OF THE SOLVENT MOLECULES. REFINEMENT WAS CARRIED OUT REMARK 3 WITH REMARK 3 ALL THE CONFORMERS PRESENT SIMULTANEOUSLY AND WITH THE POTENTIAL REMARK 3 ENERGY REMARK 3 TERMS CORRESPONDING TO INTERACTIONS BETWEEN THE DIFFERENT REMARK 3 CONFORMERS REMARK 3 EXCLUDED. THE HELIX AND SHEET RECORDS WERE CALCULATED USING REMARK 3 COORDINATES REMARK 3 FROM THE FIRST CONFORMER ONLY. THE STRUCTURE VISUALIZATION PROGRAM REMARK 3 PYMOL IS WELL-SUITED FOR DIRECTLY VIEWING THE ENSEMBLE MODEL REMARK 3 PRESENTED IN THIS PDB FILE. REMARK 4 REMARK 4 2Q45 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : APS-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RE-REFINEMENT USING REMARK 200 ENSEMBLE MODEL REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1XQ1 REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 1XQ1. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.16750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.29950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.06700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.16750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.29950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.06700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.16750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.29950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.06700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.16750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.29950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.06700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 56.33500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 76.59900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 56.33500 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 76.59900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 305 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 MET A 1 REMARK 465 1 ALA A 2 REMARK 465 1 GLY A 3 REMARK 465 1 ALA A 4 REMARK 465 1 GLU A 5 REMARK 465 1 GLN A 6 REMARK 465 1 ILE A 103 REMARK 465 1 ARG A 104 REMARK 465 1 SER A 105 REMARK 465 1 LYS A 106 REMARK 465 1 PRO A 107 REMARK 465 1 THR A 108 REMARK 465 1 SER A 151 REMARK 465 1 ILE A 152 REMARK 465 1 ALA A 153 REMARK 465 1 GLY A 154 REMARK 465 1 VAL A 155 REMARK 465 1 VAL A 156 REMARK 465 1 SER A 157 REMARK 465 1 ALA A 158 REMARK 465 1 SER A 159 REMARK 465 1 VAL A 160 REMARK 465 1 THR A 199 REMARK 465 1 PRO A 200 REMARK 465 1 LEU A 201 REMARK 465 1 ALA A 202 REMARK 465 1 GLU A 203 REMARK 465 1 ALA A 204 REMARK 465 1 VAL A 205 REMARK 465 1 TYR A 206 REMARK 465 1 ASP A 207 REMARK 465 1 ASP A 208 REMARK 465 1 GLU A 209 REMARK 465 1 PHE A 210 REMARK 465 1 LYS A 211 REMARK 465 1 LYS A 212 REMARK 465 1 VAL A 213 REMARK 465 1 VAL A 214 REMARK 465 1 ILE A 215 REMARK 465 1 SER A 216 REMARK 465 1 ARG A 217 REMARK 465 1 LYS A 218 REMARK 465 1 PRO A 219 REMARK 465 1 LEU A 220 REMARK 465 1 GLY A 221 REMARK 465 1 ARG A 222 REMARK 465 1 PHE A 223 REMARK 465 1 GLY A 266 REMARK 465 2 MET A 1 REMARK 465 2 ALA A 2 REMARK 465 2 GLY A 3 REMARK 465 2 ALA A 4 REMARK 465 2 GLU A 5 REMARK 465 2 GLN A 6 REMARK 465 2 ILE A 103 REMARK 465 2 ARG A 104 REMARK 465 2 SER A 105 REMARK 465 2 LYS A 106 REMARK 465 2 PRO A 107 REMARK 465 2 THR A 108 REMARK 465 2 SER A 151 REMARK 465 2 ILE A 152 REMARK 465 2 ALA A 153 REMARK 465 2 GLY A 154 REMARK 465 2 VAL A 155 REMARK 465 2 VAL A 156 REMARK 465 2 SER A 157 REMARK 465 2 ALA A 158 REMARK 465 2 SER A 159 REMARK 465 2 VAL A 160 REMARK 465 2 THR A 199 REMARK 465 2 PRO A 200 REMARK 465 2 LEU A 201 REMARK 465 2 ALA A 202 REMARK 465 2 GLU A 203 REMARK 465 2 ALA A 204 REMARK 465 2 VAL A 205 REMARK 465 2 TYR A 206 REMARK 465 2 ASP A 207 REMARK 465 2 ASP A 208 REMARK 465 2 GLU A 209 REMARK 465 2 PHE A 210 REMARK 465 2 LYS A 211 REMARK 465 2 LYS A 212 REMARK 465 2 VAL A 213 REMARK 465 2 VAL A 214 REMARK 465 2 ILE A 215 REMARK 465 2 SER A 216 REMARK 465 2 ARG A 217 REMARK 465 2 LYS A 218 REMARK 465 2 PRO A 219 REMARK 465 2 LEU A 220 REMARK 465 2 GLY A 221 REMARK 465 2 ARG A 222 REMARK 465 2 PHE A 223 REMARK 465 2 GLY A 266 REMARK 465 3 MET A 1 REMARK 465 3 ALA A 2 REMARK 465 3 GLY A 3 REMARK 465 3 ALA A 4 REMARK 465 3 GLU A 5 REMARK 465 3 GLN A 6 REMARK 465 3 ILE A 103 REMARK 465 3 ARG A 104 REMARK 465 3 SER A 105 REMARK 465 3 LYS A 106 REMARK 465 3 PRO A 107 REMARK 465 3 THR A 108 REMARK 465 3 SER A 151 REMARK 465 3 ILE A 152 REMARK 465 3 ALA A 153 REMARK 465 3 GLY A 154 REMARK 465 3 VAL A 155 REMARK 465 3 VAL A 156 REMARK 465 3 SER A 157 REMARK 465 3 ALA A 158 REMARK 465 3 SER A 159 REMARK 465 3 VAL A 160 REMARK 465 3 THR A 199 REMARK 465 3 PRO A 200 REMARK 465 3 LEU A 201 REMARK 465 3 ALA A 202 REMARK 465 3 GLU A 203 REMARK 465 3 ALA A 204 REMARK 465 3 VAL A 205 REMARK 465 3 TYR A 206 REMARK 465 3 ASP A 207 REMARK 465 3 ASP A 208 REMARK 465 3 GLU A 209 REMARK 465 3 PHE A 210 REMARK 465 3 LYS A 211 REMARK 465 3 LYS A 212 REMARK 465 3 VAL A 213 REMARK 465 3 VAL A 214 REMARK 465 3 ILE A 215 REMARK 465 3 SER A 216 REMARK 465 3 ARG A 217 REMARK 465 3 LYS A 218 REMARK 465 3 PRO A 219 REMARK 465 3 LEU A 220 REMARK 465 3 GLY A 221 REMARK 465 3 ARG A 222 REMARK 465 3 PHE A 223 REMARK 465 3 GLY A 266 REMARK 465 4 MET A 1 REMARK 465 4 ALA A 2 REMARK 465 4 GLY A 3 REMARK 465 4 ALA A 4 REMARK 465 4 GLU A 5 REMARK 465 4 GLN A 6 REMARK 465 4 ILE A 103 REMARK 465 4 ARG A 104 REMARK 465 4 SER A 105 REMARK 465 4 LYS A 106 REMARK 465 4 PRO A 107 REMARK 465 4 THR A 108 REMARK 465 4 SER A 151 REMARK 465 4 ILE A 152 REMARK 465 4 ALA A 153 REMARK 465 4 GLY A 154 REMARK 465 4 VAL A 155 REMARK 465 4 VAL A 156 REMARK 465 4 SER A 157 REMARK 465 4 ALA A 158 REMARK 465 4 SER A 159 REMARK 465 4 VAL A 160 REMARK 465 4 THR A 199 REMARK 465 4 PRO A 200 REMARK 465 4 LEU A 201 REMARK 465 4 ALA A 202 REMARK 465 4 GLU A 203 REMARK 465 4 ALA A 204 REMARK 465 4 VAL A 205 REMARK 465 4 TYR A 206 REMARK 465 4 ASP A 207 REMARK 465 4 ASP A 208 REMARK 465 4 GLU A 209 REMARK 465 4 PHE A 210 REMARK 465 4 LYS A 211 REMARK 465 4 LYS A 212 REMARK 465 4 VAL A 213 REMARK 465 4 VAL A 214 REMARK 465 4 ILE A 215 REMARK 465 4 SER A 216 REMARK 465 4 ARG A 217 REMARK 465 4 LYS A 218 REMARK 465 4 PRO A 219 REMARK 465 4 LEU A 220 REMARK 465 4 GLY A 221 REMARK 465 4 ARG A 222 REMARK 465 4 PHE A 223 REMARK 465 4 GLY A 266 REMARK 465 5 MET A 1 REMARK 465 5 ALA A 2 REMARK 465 5 GLY A 3 REMARK 465 5 ALA A 4 REMARK 465 5 GLU A 5 REMARK 465 5 GLN A 6 REMARK 465 5 ILE A 103 REMARK 465 5 ARG A 104 REMARK 465 5 SER A 105 REMARK 465 5 LYS A 106 REMARK 465 5 PRO A 107 REMARK 465 5 THR A 108 REMARK 465 5 SER A 151 REMARK 465 5 ILE A 152 REMARK 465 5 ALA A 153 REMARK 465 5 GLY A 154 REMARK 465 5 VAL A 155 REMARK 465 5 VAL A 156 REMARK 465 5 SER A 157 REMARK 465 5 ALA A 158 REMARK 465 5 SER A 159 REMARK 465 5 VAL A 160 REMARK 465 5 THR A 199 REMARK 465 5 PRO A 200 REMARK 465 5 LEU A 201 REMARK 465 5 ALA A 202 REMARK 465 5 GLU A 203 REMARK 465 5 ALA A 204 REMARK 465 5 VAL A 205 REMARK 465 5 TYR A 206 REMARK 465 5 ASP A 207 REMARK 465 5 ASP A 208 REMARK 465 5 GLU A 209 REMARK 465 5 PHE A 210 REMARK 465 5 LYS A 211 REMARK 465 5 LYS A 212 REMARK 465 5 VAL A 213 REMARK 465 5 VAL A 214 REMARK 465 5 ILE A 215 REMARK 465 5 SER A 216 REMARK 465 5 ARG A 217 REMARK 465 5 LYS A 218 REMARK 465 5 PRO A 219 REMARK 465 5 LEU A 220 REMARK 465 5 GLY A 221 REMARK 465 5 ARG A 222 REMARK 465 5 PHE A 223 REMARK 465 5 GLY A 266 REMARK 465 6 MET A 1 REMARK 465 6 ALA A 2 REMARK 465 6 GLY A 3 REMARK 465 6 ALA A 4 REMARK 465 6 GLU A 5 REMARK 465 6 GLN A 6 REMARK 465 6 ILE A 103 REMARK 465 6 ARG A 104 REMARK 465 6 SER A 105 REMARK 465 6 LYS A 106 REMARK 465 6 PRO A 107 REMARK 465 6 THR A 108 REMARK 465 6 SER A 151 REMARK 465 6 ILE A 152 REMARK 465 6 ALA A 153 REMARK 465 6 GLY A 154 REMARK 465 6 VAL A 155 REMARK 465 6 VAL A 156 REMARK 465 6 SER A 157 REMARK 465 6 ALA A 158 REMARK 465 6 SER A 159 REMARK 465 6 VAL A 160 REMARK 465 6 THR A 199 REMARK 465 6 PRO A 200 REMARK 465 6 LEU A 201 REMARK 465 6 ALA A 202 REMARK 465 6 GLU A 203 REMARK 465 6 ALA A 204 REMARK 465 6 VAL A 205 REMARK 465 6 TYR A 206 REMARK 465 6 ASP A 207 REMARK 465 6 ASP A 208 REMARK 465 6 GLU A 209 REMARK 465 6 PHE A 210 REMARK 465 6 LYS A 211 REMARK 465 6 LYS A 212 REMARK 465 6 VAL A 213 REMARK 465 6 VAL A 214 REMARK 465 6 ILE A 215 REMARK 465 6 SER A 216 REMARK 465 6 ARG A 217 REMARK 465 6 LYS A 218 REMARK 465 6 PRO A 219 REMARK 465 6 LEU A 220 REMARK 465 6 GLY A 221 REMARK 465 6 ARG A 222 REMARK 465 6 PHE A 223 REMARK 465 6 GLY A 266 REMARK 465 7 MET A 1 REMARK 465 7 ALA A 2 REMARK 465 7 GLY A 3 REMARK 465 7 ALA A 4 REMARK 465 7 GLU A 5 REMARK 465 7 GLN A 6 REMARK 465 7 ILE A 103 REMARK 465 7 ARG A 104 REMARK 465 7 SER A 105 REMARK 465 7 LYS A 106 REMARK 465 7 PRO A 107 REMARK 465 7 THR A 108 REMARK 465 7 SER A 151 REMARK 465 7 ILE A 152 REMARK 465 7 ALA A 153 REMARK 465 7 GLY A 154 REMARK 465 7 VAL A 155 REMARK 465 7 VAL A 156 REMARK 465 7 SER A 157 REMARK 465 7 ALA A 158 REMARK 465 7 SER A 159 REMARK 465 7 VAL A 160 REMARK 465 7 THR A 199 REMARK 465 7 PRO A 200 REMARK 465 7 LEU A 201 REMARK 465 7 ALA A 202 REMARK 465 7 GLU A 203 REMARK 465 7 ALA A 204 REMARK 465 7 VAL A 205 REMARK 465 7 TYR A 206 REMARK 465 7 ASP A 207 REMARK 465 7 ASP A 208 REMARK 465 7 GLU A 209 REMARK 465 7 PHE A 210 REMARK 465 7 LYS A 211 REMARK 465 7 LYS A 212 REMARK 465 7 VAL A 213 REMARK 465 7 VAL A 214 REMARK 465 7 ILE A 215 REMARK 465 7 SER A 216 REMARK 465 7 ARG A 217 REMARK 465 7 LYS A 218 REMARK 465 7 PRO A 219 REMARK 465 7 LEU A 220 REMARK 465 7 GLY A 221 REMARK 465 7 ARG A 222 REMARK 465 7 PHE A 223 REMARK 465 7 GLY A 266 REMARK 465 8 MET A 1 REMARK 465 8 ALA A 2 REMARK 465 8 GLY A 3 REMARK 465 8 ALA A 4 REMARK 465 8 GLU A 5 REMARK 465 8 GLN A 6 REMARK 465 8 ILE A 103 REMARK 465 8 ARG A 104 REMARK 465 8 SER A 105 REMARK 465 8 LYS A 106 REMARK 465 8 PRO A 107 REMARK 465 8 THR A 108 REMARK 465 8 SER A 151 REMARK 465 8 ILE A 152 REMARK 465 8 ALA A 153 REMARK 465 8 GLY A 154 REMARK 465 8 VAL A 155 REMARK 465 8 VAL A 156 REMARK 465 8 SER A 157 REMARK 465 8 ALA A 158 REMARK 465 8 SER A 159 REMARK 465 8 VAL A 160 REMARK 465 8 THR A 199 REMARK 465 8 PRO A 200 REMARK 465 8 LEU A 201 REMARK 465 8 ALA A 202 REMARK 465 8 GLU A 203 REMARK 465 8 ALA A 204 REMARK 465 8 VAL A 205 REMARK 465 8 TYR A 206 REMARK 465 8 ASP A 207 REMARK 465 8 ASP A 208 REMARK 465 8 GLU A 209 REMARK 465 8 PHE A 210 REMARK 465 8 LYS A 211 REMARK 465 8 LYS A 212 REMARK 465 8 VAL A 213 REMARK 465 8 VAL A 214 REMARK 465 8 ILE A 215 REMARK 465 8 SER A 216 REMARK 465 8 ARG A 217 REMARK 465 8 LYS A 218 REMARK 465 8 PRO A 219 REMARK 465 8 LEU A 220 REMARK 465 8 GLY A 221 REMARK 465 8 ARG A 222 REMARK 465 8 PHE A 223 REMARK 465 8 GLY A 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 45 149.07 -172.15 REMARK 500 1 ALA A 72 -5.08 -48.60 REMARK 500 1 SER A 162 -78.29 57.61 REMARK 500 1 ASN A 258 14.26 56.73 REMARK 500 2 ALA A 72 -6.16 -51.09 REMARK 500 2 CYS A 143 61.29 -158.27 REMARK 500 2 SER A 162 -67.94 68.22 REMARK 500 2 THR A 248 74.09 -161.12 REMARK 500 2 VAL A 251 44.33 -84.20 REMARK 500 2 PRO A 264 -176.80 -61.02 REMARK 500 3 ALA A 14 -13.48 72.54 REMARK 500 3 ALA A 72 -10.90 -49.94 REMARK 500 3 LEU A 93 116.77 -169.18 REMARK 500 3 SER A 162 -43.21 66.83 REMARK 500 3 VAL A 251 43.46 -85.06 REMARK 500 3 ASN A 258 19.90 55.01 REMARK 500 4 ALA A 72 -7.50 -53.08 REMARK 500 4 CYS A 143 70.57 -164.45 REMARK 500 4 MET A 149 104.51 -19.48 REMARK 500 4 SER A 162 -86.28 48.40 REMARK 500 4 SER A 184 1.00 -65.20 REMARK 500 4 VAL A 196 -60.56 -90.09 REMARK 500 5 ALA A 14 -14.59 72.95 REMARK 500 5 ALA A 45 149.67 -178.97 REMARK 500 5 ALA A 72 -5.47 -49.87 REMARK 500 5 CYS A 143 46.25 -172.16 REMARK 500 5 SER A 162 -65.04 86.95 REMARK 500 5 PRO A 194 -179.49 -64.79 REMARK 500 6 ASN A 145 122.85 -171.21 REMARK 500 6 SER A 162 -52.63 90.50 REMARK 500 6 VAL A 196 -62.06 -90.95 REMARK 500 6 VAL A 251 47.96 -79.96 REMARK 500 7 ALA A 14 -12.31 71.94 REMARK 500 7 ALA A 72 10.36 -58.95 REMARK 500 7 SER A 162 -56.49 91.62 REMARK 500 7 PRO A 194 -75.42 -62.24 REMARK 500 7 ALA A 195 146.85 161.77 REMARK 500 7 PRO A 226 0.36 -65.46 REMARK 500 8 TRP A 10 40.23 -102.84 REMARK 500 8 ALA A 72 1.88 -55.20 REMARK 500 8 SER A 162 -84.81 46.55 REMARK 500 8 VAL A 251 45.64 -86.15 REMARK 500 8 ASN A 258 26.58 49.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.2303 RELATED DB: TARGETDB REMARK 900 RELATED ID: 1XQ1 RELATED DB: PDB REMARK 900 ORIGINAL REFINEMENT BASED ON SAME DATA AND R-FREE SET. DBREF 2Q45 A 1 266 UNP Q9ASX2 TRNH1_ARATH 1 266 SEQRES 1 A 266 MET ALA GLY ALA GLU GLN SER GLN ARG TRP SER LEU LYS SEQRES 2 A 266 ALA LYS THR VAL LEU VAL THR GLY GLY THR LYS GLY ILE SEQRES 3 A 266 GLY HIS ALA ILE VAL GLU GLU PHE ALA GLY PHE GLY ALA SEQRES 4 A 266 VAL ILE HIS THR CYS ALA ARG ASN GLU TYR GLU LEU ASN SEQRES 5 A 266 GLU CYS LEU SER LYS TRP GLN LYS LYS GLY PHE GLN VAL SEQRES 6 A 266 THR GLY SER VAL CYS ASP ALA SER LEU ARG PRO GLU ARG SEQRES 7 A 266 GLU LYS LEU MET GLN THR VAL SER SER MET PHE GLY GLY SEQRES 8 A 266 LYS LEU ASP ILE LEU ILE ASN ASN LEU GLY ALA ILE ARG SEQRES 9 A 266 SER LYS PRO THR LEU ASP TYR THR ALA GLU ASP PHE SER SEQRES 10 A 266 PHE HIS ILE SER THR ASN LEU GLU SER ALA TYR HIS LEU SEQRES 11 A 266 SER GLN LEU ALA HIS PRO LEU LEU LYS ALA SER GLY CYS SEQRES 12 A 266 GLY ASN ILE ILE PHE MET SER SER ILE ALA GLY VAL VAL SEQRES 13 A 266 SER ALA SER VAL GLY SER ILE TYR SER ALA THR LYS GLY SEQRES 14 A 266 ALA LEU ASN GLN LEU ALA ARG ASN LEU ALA CYS GLU TRP SEQRES 15 A 266 ALA SER ASP GLY ILE ARG ALA ASN ALA VAL ALA PRO ALA SEQRES 16 A 266 VAL ILE ALA THR PRO LEU ALA GLU ALA VAL TYR ASP ASP SEQRES 17 A 266 GLU PHE LYS LYS VAL VAL ILE SER ARG LYS PRO LEU GLY SEQRES 18 A 266 ARG PHE GLY GLU PRO GLU GLU VAL SER SER LEU VAL ALA SEQRES 19 A 266 PHE LEU CYS MET PRO ALA ALA SER TYR ILE THR GLY GLN SEQRES 20 A 266 THR ILE CYS VAL ASP GLY GLY LEU THR VAL ASN GLY PHE SEQRES 21 A 266 SER TYR GLN PRO GLN GLY FORMUL 2 HOH *57(H2 O) HELIX 1 1 SER A 7 SER A 11 5 5 HELIX 2 2 LYS A 24 PHE A 37 1 14 HELIX 3 3 ASN A 47 LYS A 60 1 14 HELIX 4 4 LEU A 74 GLY A 90 1 17 HELIX 5 5 THR A 112 GLY A 142 1 31 HELIX 6 6 SER A 162 ALA A 183 1 22 HELIX 7 7 SER A 184 GLY A 186 5 3 HELIX 8 8 GLU A 225 GLU A 228 5 4 HELIX 9 9 VAL A 229 MET A 238 1 10 HELIX 10 10 PRO A 239 SER A 242 5 4 SHEET 1 A 7 VAL A 65 SER A 68 0 SHEET 2 A 7 VAL A 40 CYS A 44 1 N ILE A 41 O THR A 66 SHEET 3 A 7 THR A 16 VAL A 19 1 N VAL A 17 O HIS A 42 SHEET 4 A 7 ILE A 95 ASN A 99 1 O ILE A 97 N LEU A 18 SHEET 5 A 7 ASN A 145 MET A 149 1 O ILE A 147 N LEU A 96 SHEET 6 A 7 ARG A 188 ALA A 193 1 O VAL A 192 N PHE A 148 SHEET 7 A 7 THR A 248 CYS A 250 1 O ILE A 249 N ALA A 193 SHEET 1 B 2 LEU A 255 VAL A 257 0 SHEET 2 B 2 PHE A 260 TYR A 262 -1 O PHE A 260 N VAL A 257 CRYST1 56.335 76.599 112.134 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017751 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008918 0.00000 MODEL 1