HEADER OXIDOREDUCTASE 31-MAY-07 2Q4A TITLE ENSEMBLE REFINEMENT OF THE PROTEIN CRYSTAL STRUCTURE OF GENE PRODUCT TITLE 2 FROM ARABIDOPSIS THALIANA AT3G21360 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLAVAMINATE SYNTHASE-LIKE PROTEIN AT3G21360; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: CV. COLUMBIA; SOURCE 6 GENE: AT3G21360, MHC9_4; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVP-17 KEYWDS ENSEMBLE REFINEMENT, REFINEMENT METHODOLOGY DEVELOPMENT, AT3G21360, KEYWDS 2 STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR KEYWDS 3 EUKARYOTIC STRUCTURAL GENOMICS, CESG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION NUMMDL 4 AUTHOR E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 30-AUG-23 2Q4A 1 REMARK LINK REVDAT 4 10-AUG-11 2Q4A 1 REMARK HETATM REVDAT 3 24-FEB-09 2Q4A 1 VERSN REVDAT 2 02-OCT-07 2Q4A 1 JRNL REVDAT 1 19-JUN-07 2Q4A 0 JRNL AUTH E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JRNL TITL ENSEMBLE REFINEMENT OF PROTEIN CRYSTAL STRUCTURES: JRNL TITL 2 VALIDATION AND APPLICATION. JRNL REF STRUCTURE V. 15 1040 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850744 JRNL DOI 10.1016/J.STR.2007.06.019 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.BITTO,C.A.BINGMAN,S.T.M.ALLARD,G.E.WESENBERG,D.J.ACETI, REMARK 1 AUTH 2 R.L.WROBEL,R.O.FREDERICK,H.SREENATH,F.C.VOJTIK,W.B.JEON, REMARK 1 AUTH 3 C.S.NEWMAN,J.PRIMM,M.R.SUSSMAN,B.G.FOX,J.L.MARKLEY, REMARK 1 AUTH 4 G.N.PHILLIPS JR. REMARK 1 TITL THE STRUCTURE AT 2.4A RESOLUTION OF THE PROTEIN FROM GENE REMARK 1 TITL 2 LOCUS AT3G21360, A PUTATIVE FEII/2-OXOGLUTARATE-DEPENDENT REMARK 1 TITL 3 ENZYME FROM ARABIDOPSIS THALIANA REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 469 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 DOI 10.1107/S1744309105011565 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD USING AMPLITUDES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 279052.438 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 32733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1628 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4941 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 280 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5141 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.58000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : -2.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.090 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.890 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.230 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.590 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.020 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 69.43 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS PDB ENTRY IS A RE-REFINEMENT USING AN ENSEMBLE MODEL OF THE REMARK 3 PREVIOUSLY REMARK 3 DEPOSITED SINGLE-CONFORMER STRUCTURE 1Y0Z AND REMARK 3 THE FIRST DATA SET IN THE DEPOSITED STRUCTURE FACTOR FILE REMARK 3 FOR 1Y0Z ALONG WITH THE R-FREE SET DEFINED THEREIN. THE COORDINATES REMARK 3 WERE GENERATED BY AN AUTOMATED PROTOCOL FROM AN INITIAL MODEL REMARK 3 CONSISTING REMARK 3 OF 4 IDENTICAL COPIES OF THE PROTEIN AND NON-WATER REMARK 3 HETERO-ATOMS ASSIGNED FRACTIONAL OCCUPANCIES ADDING UP TO ONE, AND REMARK 3 A REMARK 3 SINGLE COPY OF THE SOLVENT MOLECULES. REFINEMENT WAS CARRIED OUT REMARK 3 WITH REMARK 3 ALL THE CONFORMERS PRESENT SIMULTANEOUSLY AND WITH THE POTENTIAL REMARK 3 ENERGY REMARK 3 TERMS CORRESPONDING TO INTERACTIONS BETWEEN THE DIFFERENT REMARK 3 CONFORMERS REMARK 3 EXCLUDED. THE HELIX AND SHEET RECORDS WERE CALCULATED USING REMARK 3 COORDINATES REMARK 3 FROM THE FIRST CONFORMER ONLY. THE STRUCTURE VISUALIZATION PROGRAM REMARK 3 PYMOL IS WELL-SUITED FOR DIRECTLY VIEWING THE ENSEMBLE MODEL REMARK 3 PRESENTED IN THIS PDB FILE. REMARK 4 REMARK 4 2Q4A COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : APS-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RE-REFINEMENT USING REMARK 200 ENSEMBLE MODEL REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1Y0Z REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 1Y0Z. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.63800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.54700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.63800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.54700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1309 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 MET A 1 REMARK 465 1 ALA A 2 REMARK 465 1 GLU A 3 REMARK 465 1 SER A 30 REMARK 465 1 ALA A 31 REMARK 465 1 SER A 32 REMARK 465 1 ILE A 33 REMARK 465 1 PRO A 34 REMARK 465 1 ILE A 35 REMARK 465 1 MET B 1 REMARK 465 1 VAL B 92 REMARK 465 1 GLY B 93 REMARK 465 1 GLY B 94 REMARK 465 1 ALA B 95 REMARK 465 1 ALA B 96 REMARK 465 1 PRO B 97 REMARK 465 1 ARG B 98 REMARK 465 2 MET A 1 REMARK 465 2 ALA A 2 REMARK 465 2 GLU A 3 REMARK 465 2 SER A 30 REMARK 465 2 ALA A 31 REMARK 465 2 SER A 32 REMARK 465 2 ILE A 33 REMARK 465 2 PRO A 34 REMARK 465 2 ILE A 35 REMARK 465 2 MET B 1 REMARK 465 2 VAL B 92 REMARK 465 2 GLY B 93 REMARK 465 2 GLY B 94 REMARK 465 2 ALA B 95 REMARK 465 2 ALA B 96 REMARK 465 2 PRO B 97 REMARK 465 2 ARG B 98 REMARK 465 3 MET A 1 REMARK 465 3 ALA A 2 REMARK 465 3 GLU A 3 REMARK 465 3 SER A 30 REMARK 465 3 ALA A 31 REMARK 465 3 SER A 32 REMARK 465 3 ILE A 33 REMARK 465 3 PRO A 34 REMARK 465 3 ILE A 35 REMARK 465 3 MET B 1 REMARK 465 3 VAL B 92 REMARK 465 3 GLY B 93 REMARK 465 3 GLY B 94 REMARK 465 3 ALA B 95 REMARK 465 3 ALA B 96 REMARK 465 3 PRO B 97 REMARK 465 3 ARG B 98 REMARK 465 4 MET A 1 REMARK 465 4 ALA A 2 REMARK 465 4 GLU A 3 REMARK 465 4 SER A 30 REMARK 465 4 ALA A 31 REMARK 465 4 SER A 32 REMARK 465 4 ILE A 33 REMARK 465 4 PRO A 34 REMARK 465 4 ILE A 35 REMARK 465 4 MET B 1 REMARK 465 4 VAL B 92 REMARK 465 4 GLY B 93 REMARK 465 4 GLY B 94 REMARK 465 4 ALA B 95 REMARK 465 4 ALA B 96 REMARK 465 4 PRO B 97 REMARK 465 4 ARG B 98 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 37 154.76 -40.68 REMARK 500 1 ALA A 63 148.00 -172.03 REMARK 500 1 PHE A 86 147.52 -38.38 REMARK 500 1 ALA A 96 152.69 -46.79 REMARK 500 1 ALA A 108 119.19 -171.38 REMARK 500 1 ASN A 109 92.74 -65.28 REMARK 500 1 GLU A 110 -176.50 -58.98 REMARK 500 1 PRO A 112 142.91 -34.89 REMARK 500 1 GLU A 128 67.07 -100.02 REMARK 500 1 THR A 147 73.96 -111.03 REMARK 500 1 LYS A 162 -70.44 -66.06 REMARK 500 1 HIS A 163 71.75 -108.61 REMARK 500 1 PRO A 187 3.84 -69.79 REMARK 500 1 ASP A 223 48.53 -75.22 REMARK 500 1 LYS A 261 -16.31 -46.64 REMARK 500 1 SER A 314 -162.22 -125.08 REMARK 500 1 ARG A 315 116.69 -164.96 REMARK 500 1 ARG A 322 137.04 -171.79 REMARK 500 1 SER B 19 -3.24 74.51 REMARK 500 1 PRO B 29 168.34 -43.48 REMARK 500 1 SER B 30 -70.31 -79.27 REMARK 500 1 LEU B 38 116.84 -28.59 REMARK 500 1 PRO B 70 24.92 -57.02 REMARK 500 1 SER B 100 113.61 -39.44 REMARK 500 1 ASN B 109 104.45 -58.86 REMARK 500 1 LEU B 200 54.40 37.45 REMARK 500 1 ASN B 249 -166.38 -167.32 REMARK 500 1 TRP B 258 65.79 -101.87 REMARK 500 1 ASP B 260 -167.99 -173.48 REMARK 500 1 ALA B 295 77.38 -115.35 REMARK 500 1 ASN B 308 -7.16 -59.06 REMARK 500 1 ARG B 322 129.87 -173.19 REMARK 500 2 SER A 19 -26.60 69.40 REMARK 500 2 GLN A 50 31.66 -83.99 REMARK 500 2 PRO A 70 67.97 -62.11 REMARK 500 2 VAL A 101 -63.89 -106.22 REMARK 500 2 GLU A 172 -56.38 -167.49 REMARK 500 2 LEU A 200 43.61 35.49 REMARK 500 2 ALA A 207 -71.67 -71.76 REMARK 500 2 LEU A 214 32.53 -88.73 REMARK 500 2 ASP A 223 16.63 -68.75 REMARK 500 2 TRP A 258 58.11 -93.95 REMARK 500 2 SER B 19 -5.00 72.48 REMARK 500 2 GLU B 110 -161.90 -171.22 REMARK 500 2 GLU B 128 75.28 -109.19 REMARK 500 2 SER B 189 132.81 -175.09 REMARK 500 2 GLU B 208 17.64 -69.02 REMARK 500 2 ASP B 223 34.24 -81.36 REMARK 500 2 ALA B 226 117.59 -172.33 REMARK 500 2 SER B 250 37.36 -82.62 REMARK 500 REMARK 500 THIS ENTRY HAS 103 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 313 NE2 89.8 REMARK 620 3 HOH A1131 O 176.8 88.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 902 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HIS B 313 NE2 86.6 REMARK 620 3 HOH B1179 O 90.6 139.9 REMARK 620 4 HOH B1180 O 144.6 92.7 67.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.13167 RELATED DB: TARGETDB REMARK 900 RELATED ID: 1Y0Z RELATED DB: PDB REMARK 900 ORIGINAL REFINEMENT BASED ON SAME DATA AND R-FREE SET. DBREF 2Q4A A 1 330 UNP Q9LIG0 Y3136_ARATH 1 330 DBREF 2Q4A B 1 330 UNP Q9LIG0 Y3136_ARATH 1 330 SEQRES 1 A 330 MET ALA GLU LEU LEU LEU VAL GLU THR PRO ILE PRO GLN SEQRES 2 A 330 GLN LYS HIS TYR GLU SER LYS PRO PHE PRO ALA VAL ILE SEQRES 3 A 330 SER PRO PRO SER ALA SER ILE PRO ILE PRO ALA LEU SER SEQRES 4 A 330 LEU PRO LEU PHE THR GLN THR ILE LYS THR GLN LYS HIS SEQRES 5 A 330 TYR LEU ASP SER LEU LEU HIS GLU SER GLY ALA VAL LEU SEQRES 6 A 330 PHE ARG GLY PHE PRO VAL ASN SER ALA ASP ASP PHE ASN SEQRES 7 A 330 ASP VAL VAL GLU ALA PHE GLY PHE ASP GLU LEU PRO TYR SEQRES 8 A 330 VAL GLY GLY ALA ALA PRO ARG THR SER VAL VAL GLY ARG SEQRES 9 A 330 VAL PHE THR ALA ASN GLU SER PRO PRO ASP GLN LYS ILE SEQRES 10 A 330 PRO PHE HIS HIS GLU MET ALA GLN VAL ARG GLU PHE PRO SEQRES 11 A 330 SER LYS LEU PHE PHE TYR CYS GLU ILE GLU PRO LYS CYS SEQRES 12 A 330 GLY GLY GLU THR PRO ILE VAL LEU SER HIS VAL VAL TYR SEQRES 13 A 330 GLU ARG MET LYS ASP LYS HIS PRO GLU PHE VAL GLN ARG SEQRES 14 A 330 LEU GLU GLU HIS GLY LEU LEU TYR VAL ARG VAL LEU GLY SEQRES 15 A 330 GLU ASP ASP ASP PRO SER SER PRO ILE GLY ARG GLY TRP SEQRES 16 A 330 LYS SER THR PHE LEU THR HIS ASP LYS ASN LEU ALA GLU SEQRES 17 A 330 GLN ARG ALA VAL ASP LEU GLY MET LYS LEU GLU TRP THR SEQRES 18 A 330 GLU ASP GLY GLY ALA LYS THR VAL MET GLY PRO ILE PRO SEQRES 19 A 330 ALA ILE LYS TYR ASP GLU SER ARG ASN ARG LYS VAL TRP SEQRES 20 A 330 PHE ASN SER MET VAL ALA ALA TYR THR GLY TRP GLU ASP SEQRES 21 A 330 LYS ARG ASN ASP PRO ARG LYS ALA VAL THR PHE GLY ASP SEQRES 22 A 330 GLY LYS PRO LEU PRO ALA ASP ILE VAL HIS ASP CYS LEU SEQRES 23 A 330 ARG ILE LEU GLU GLU GLU CYS VAL ALA VAL PRO TRP GLN SEQRES 24 A 330 ARG GLY ASP VAL LEU LEU ILE ASP ASN TRP ALA VAL LEU SEQRES 25 A 330 HIS SER ARG ARG PRO PHE ASP PRO PRO ARG ARG VAL LEU SEQRES 26 A 330 ALA SER LEU CYS LYS SEQRES 1 B 330 MET ALA GLU LEU LEU LEU VAL GLU THR PRO ILE PRO GLN SEQRES 2 B 330 GLN LYS HIS TYR GLU SER LYS PRO PHE PRO ALA VAL ILE SEQRES 3 B 330 SER PRO PRO SER ALA SER ILE PRO ILE PRO ALA LEU SER SEQRES 4 B 330 LEU PRO LEU PHE THR GLN THR ILE LYS THR GLN LYS HIS SEQRES 5 B 330 TYR LEU ASP SER LEU LEU HIS GLU SER GLY ALA VAL LEU SEQRES 6 B 330 PHE ARG GLY PHE PRO VAL ASN SER ALA ASP ASP PHE ASN SEQRES 7 B 330 ASP VAL VAL GLU ALA PHE GLY PHE ASP GLU LEU PRO TYR SEQRES 8 B 330 VAL GLY GLY ALA ALA PRO ARG THR SER VAL VAL GLY ARG SEQRES 9 B 330 VAL PHE THR ALA ASN GLU SER PRO PRO ASP GLN LYS ILE SEQRES 10 B 330 PRO PHE HIS HIS GLU MET ALA GLN VAL ARG GLU PHE PRO SEQRES 11 B 330 SER LYS LEU PHE PHE TYR CYS GLU ILE GLU PRO LYS CYS SEQRES 12 B 330 GLY GLY GLU THR PRO ILE VAL LEU SER HIS VAL VAL TYR SEQRES 13 B 330 GLU ARG MET LYS ASP LYS HIS PRO GLU PHE VAL GLN ARG SEQRES 14 B 330 LEU GLU GLU HIS GLY LEU LEU TYR VAL ARG VAL LEU GLY SEQRES 15 B 330 GLU ASP ASP ASP PRO SER SER PRO ILE GLY ARG GLY TRP SEQRES 16 B 330 LYS SER THR PHE LEU THR HIS ASP LYS ASN LEU ALA GLU SEQRES 17 B 330 GLN ARG ALA VAL ASP LEU GLY MET LYS LEU GLU TRP THR SEQRES 18 B 330 GLU ASP GLY GLY ALA LYS THR VAL MET GLY PRO ILE PRO SEQRES 19 B 330 ALA ILE LYS TYR ASP GLU SER ARG ASN ARG LYS VAL TRP SEQRES 20 B 330 PHE ASN SER MET VAL ALA ALA TYR THR GLY TRP GLU ASP SEQRES 21 B 330 LYS ARG ASN ASP PRO ARG LYS ALA VAL THR PHE GLY ASP SEQRES 22 B 330 GLY LYS PRO LEU PRO ALA ASP ILE VAL HIS ASP CYS LEU SEQRES 23 B 330 ARG ILE LEU GLU GLU GLU CYS VAL ALA VAL PRO TRP GLN SEQRES 24 B 330 ARG GLY ASP VAL LEU LEU ILE ASP ASN TRP ALA VAL LEU SEQRES 25 B 330 HIS SER ARG ARG PRO PHE ASP PRO PRO ARG ARG VAL LEU SEQRES 26 B 330 ALA SER LEU CYS LYS HET FE A 901 1 HET SO4 A 801 5 HET SO4 A 802 5 HET SO4 A 803 5 HET FE B 902 1 HET SO4 B 804 5 HETNAM FE FE (III) ION HETNAM SO4 SULFATE ION FORMUL 3 FE 2(FE 3+) FORMUL 4 SO4 4(O4 S 2-) FORMUL 9 HOH *780(H2 O) HELIX 1 1 SER A 39 GLN A 50 1 12 HELIX 2 2 GLN A 50 GLY A 62 1 13 HELIX 3 3 SER A 73 PHE A 84 1 12 HELIX 4 4 SER A 152 HIS A 163 1 12 HELIX 5 5 HIS A 163 GLY A 174 1 12 HELIX 6 6 GLY A 194 PHE A 199 1 6 HELIX 7 7 ASP A 203 LEU A 214 1 12 HELIX 8 8 SER A 250 THR A 256 1 7 HELIX 9 9 ASP A 264 ALA A 268 1 5 HELIX 10 10 PRO A 278 CYS A 293 1 16 HELIX 11 11 SER B 39 GLN B 50 1 12 HELIX 12 12 GLN B 50 GLY B 62 1 13 HELIX 13 13 SER B 73 GLY B 85 1 13 HELIX 14 14 SER B 152 HIS B 163 1 12 HELIX 15 15 HIS B 163 GLY B 174 1 12 HELIX 16 16 GLY B 194 PHE B 199 1 6 HELIX 17 17 ASP B 203 LEU B 214 1 12 HELIX 18 18 SER B 250 TRP B 258 1 9 HELIX 19 19 ASP B 264 LYS B 267 5 4 HELIX 20 20 PRO B 278 CYS B 293 1 16 SHEET 1 A 6 VAL A 7 GLU A 8 0 SHEET 2 A 6 ALA A 24 SER A 27 -1 O SER A 27 N VAL A 7 SHEET 3 A 6 ALA A 63 PHE A 66 1 O ALA A 63 N ALA A 24 SHEET 4 A 6 VAL A 303 ASP A 307 -1 O VAL A 303 N PHE A 66 SHEET 5 A 6 LYS A 132 ILE A 139 -1 N LEU A 133 O ILE A 306 SHEET 6 A 6 ARG A 323 LEU A 328 -1 O LEU A 325 N TYR A 136 SHEET 1 B 2 LYS A 15 TYR A 17 0 SHEET 2 B 2 LYS A 20 PHE A 22 -1 O PHE A 22 N LYS A 15 SHEET 1 C 2 THR A 99 VAL A 102 0 SHEET 2 C 2 VAL A 105 THR A 107 -1 O THR A 107 N THR A 99 SHEET 1 D 3 ILE A 117 HIS A 120 0 SHEET 2 D 3 VAL A 311 ARG A 315 -1 O HIS A 313 N HIS A 120 SHEET 3 D 3 ILE A 149 LEU A 151 -1 N VAL A 150 O LEU A 312 SHEET 1 E 2 CYS A 143 GLY A 144 0 SHEET 2 E 2 PHE A 318 ASP A 319 -1 O ASP A 319 N CYS A 143 SHEET 1 F 4 GLU A 219 TRP A 220 0 SHEET 2 F 4 ALA A 226 ILE A 233 -1 O LYS A 227 N GLU A 219 SHEET 3 F 4 LEU A 175 LEU A 181 -1 N LEU A 181 O ALA A 226 SHEET 4 F 4 VAL A 269 PHE A 271 -1 O THR A 270 N LEU A 176 SHEET 1 G 2 LYS A 237 ASP A 239 0 SHEET 2 G 2 ARG A 244 VAL A 246 -1 O VAL A 246 N LYS A 237 SHEET 1 H 8 VAL B 7 THR B 9 0 SHEET 2 H 8 ALA B 24 SER B 27 -1 O VAL B 25 N THR B 9 SHEET 3 H 8 ALA B 63 PHE B 66 1 O LEU B 65 N ALA B 24 SHEET 4 H 8 VAL B 303 ASP B 307 -1 O LEU B 305 N VAL B 64 SHEET 5 H 8 LYS B 132 ILE B 139 -1 N PHE B 135 O LEU B 304 SHEET 6 H 8 ARG B 323 LEU B 328 -1 O ARG B 323 N ILE B 139 SHEET 7 H 8 VAL B 105 THR B 107 -1 N PHE B 106 O ALA B 326 SHEET 8 H 8 SER B 100 VAL B 102 -1 N VAL B 102 O VAL B 105 SHEET 1 I 2 LYS B 15 TYR B 17 0 SHEET 2 I 2 LYS B 20 PHE B 22 -1 O LYS B 20 N TYR B 17 SHEET 1 J 3 ILE B 117 HIS B 120 0 SHEET 2 J 3 VAL B 311 ARG B 315 -1 O HIS B 313 N HIS B 120 SHEET 3 J 3 ILE B 149 LEU B 151 -1 N VAL B 150 O LEU B 312 SHEET 1 K 2 CYS B 143 GLY B 144 0 SHEET 2 K 2 PHE B 318 ASP B 319 -1 O ASP B 319 N CYS B 143 SHEET 1 L 4 LYS B 217 GLU B 219 0 SHEET 2 L 4 ALA B 226 ILE B 233 -1 O LYS B 227 N GLU B 219 SHEET 3 L 4 LEU B 175 LEU B 181 -1 N ARG B 179 O THR B 228 SHEET 4 L 4 VAL B 269 PHE B 271 -1 O THR B 270 N LEU B 176 SHEET 1 M 2 LYS B 237 ASP B 239 0 SHEET 2 M 2 ARG B 244 VAL B 246 -1 O ARG B 244 N ASP B 239 LINK NE2 HIS A 120 FE FE A 901 1555 1555 2.43 LINK NE2 HIS A 313 FE FE A 901 1555 1555 2.03 LINK FE FE A 901 O HOH A1131 1555 1555 2.43 LINK NE2 HIS B 120 FE FE B 902 1555 1555 2.58 LINK NE2 HIS B 313 FE FE B 902 1555 1555 2.29 LINK FE FE B 902 O HOH B1179 1555 1555 2.37 LINK FE FE B 902 O HOH B1180 1555 1555 2.05 CISPEP 1 PHE A 22 PRO A 23 1 -0.41 CISPEP 2 GLY A 231 PRO A 232 1 0.23 CISPEP 3 PRO A 320 PRO A 321 1 -0.34 CISPEP 4 PHE B 22 PRO B 23 1 -0.85 CISPEP 5 ILE B 33 PRO B 34 1 -0.28 CISPEP 6 GLY B 231 PRO B 232 1 0.15 CISPEP 7 PRO B 320 PRO B 321 1 -1.58 CISPEP 8 PHE A 22 PRO A 23 2 -0.51 CISPEP 9 GLY A 231 PRO A 232 2 -0.01 CISPEP 10 PRO A 320 PRO A 321 2 0.00 CISPEP 11 PHE B 22 PRO B 23 2 -0.73 CISPEP 12 ILE B 33 PRO B 34 2 -0.24 CISPEP 13 GLY B 231 PRO B 232 2 -0.13 CISPEP 14 PRO B 320 PRO B 321 2 -1.77 CISPEP 15 PHE A 22 PRO A 23 3 -0.22 CISPEP 16 GLY A 231 PRO A 232 3 0.01 CISPEP 17 PRO A 320 PRO A 321 3 1.38 CISPEP 18 PHE B 22 PRO B 23 3 -0.43 CISPEP 19 ILE B 33 PRO B 34 3 -0.28 CISPEP 20 GLY B 231 PRO B 232 3 0.25 CISPEP 21 PRO B 320 PRO B 321 3 0.41 CISPEP 22 PHE A 22 PRO A 23 4 0.27 CISPEP 23 GLY A 231 PRO A 232 4 0.19 CISPEP 24 PRO A 320 PRO A 321 4 0.52 CISPEP 25 PHE B 22 PRO B 23 4 -0.79 CISPEP 26 ILE B 33 PRO B 34 4 -0.21 CISPEP 27 GLY B 231 PRO B 232 4 0.24 CISPEP 28 PRO B 320 PRO B 321 4 0.07 SITE 1 AC1 5 PHE A 135 THR A 147 SER A 314 ARG A 315 SITE 2 AC1 5 ARG A 322 SITE 1 AC2 4 ARG A 158 LYS A 162 LYS A 330 HOH A1044 SITE 1 AC3 5 HIS A 163 PRO A 164 GLU A 165 PHE A 166 SITE 2 AC3 5 HOH A1086 SITE 1 AC4 5 HIS A 120 GLU A 122 HIS A 313 HOH A1131 SITE 2 AC4 5 HOH A1175 SITE 1 AC5 5 HIS B 163 PRO B 164 GLU B 165 PHE B 166 SITE 2 AC5 5 HOH B1079 SITE 1 AC6 5 HIS B 120 GLU B 122 HIS B 313 HOH B1179 SITE 2 AC6 5 HOH B1180 CRYST1 145.276 61.094 114.681 90.00 121.68 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006883 0.000000 0.004248 0.00000 SCALE2 0.000000 0.016368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010247 0.00000 MODEL 1