HEADER METAL BINDING PROTEIN 31-MAY-07 2Q4C TITLE ENSEMBLE REFINEMENT OF THE PROTEIN CRYSTAL STRUCTURE OF ANNEXIN FROM TITLE 2 ARABIDOPSIS THALIANA GENE AT1G35720 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANNEXIN D1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ANNAT1, ANNEXIN A1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: CV. COLUMBIA; SOURCE 6 TISSUE: SEEDLING; SOURCE 7 GENE: AT1G35720, ANN1, ANNAT1, ANX23-ATH, ATOXY5, OXY5; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PVP-17 KEYWDS ENSEMBLE REFINEMENT, REFINEMENT METHODOLOGY DEVELOPMENT, AT1G35720, KEYWDS 2 ANNEXIN, MEMBRANE-BINDING, CALCIUM-BINDING, STRUCTURAL GENOMICS, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 4 GENOMICS, CESG, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION NUMMDL 8 AUTHOR E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 30-AUG-23 2Q4C 1 SEQADV REVDAT 4 10-AUG-11 2Q4C 1 REMARK REVDAT 3 24-FEB-09 2Q4C 1 VERSN REVDAT 2 02-OCT-07 2Q4C 1 JRNL REVDAT 1 19-JUN-07 2Q4C 0 JRNL AUTH E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JRNL TITL ENSEMBLE REFINEMENT OF PROTEIN CRYSTAL STRUCTURES: JRNL TITL 2 VALIDATION AND APPLICATION. JRNL REF STRUCTURE V. 15 1040 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850744 JRNL DOI 10.1016/J.STR.2007.06.019 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD USING AMPLITUDES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 598538.688 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 27097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1317 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3974 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 214 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4970 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.75000 REMARK 3 B22 (A**2) : -3.09000 REMARK 3 B33 (A**2) : -8.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.660 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.520 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.620 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.130 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 42.66 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS PDB ENTRY IS A RE-REFINEMENT USING AN ENSEMBLE MODEL OF THE REMARK 3 PREVIOUSLY REMARK 3 DEPOSITED SINGLE-CONFORMER STRUCTURE 1YCN AND REMARK 3 THE FIRST DATA SET IN THE DEPOSITED STRUCTURE FACTOR FILE REMARK 3 FOR 1YCN ALONG WITH THE R-FREE SET DEFINED THEREIN. THE COORDINATES REMARK 3 WERE GENERATED BY AN AUTOMATED PROTOCOL FROM AN INITIAL MODEL REMARK 3 CONSISTING REMARK 3 OF 8 IDENTICAL COPIES OF THE PROTEIN AND NON-WATER REMARK 3 HETERO-ATOMS ASSIGNED FRACTIONAL OCCUPANCIES ADDING UP TO ONE, AND REMARK 3 A REMARK 3 SINGLE COPY OF THE SOLVENT MOLECULES. REFINEMENT WAS CARRIED OUT REMARK 3 WITH REMARK 3 ALL THE CONFORMERS PRESENT SIMULTANEOUSLY AND WITH THE POTENTIAL REMARK 3 ENERGY REMARK 3 TERMS CORRESPONDING TO INTERACTIONS BETWEEN THE DIFFERENT REMARK 3 CONFORMERS REMARK 3 EXCLUDED. THE HELIX AND SHEET RECORDS WERE CALCULATED USING REMARK 3 COORDINATES REMARK 3 FROM THE FIRST CONFORMER ONLY. THE STRUCTURE VISUALIZATION PROGRAM REMARK 3 PYMOL IS WELL-SUITED FOR DIRECTLY VIEWING THE ENSEMBLE MODEL REMARK 3 PRESENTED IN THIS PDB FILE. REMARK 4 REMARK 4 2Q4C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : APS-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RE-REFINEMENT USING REMARK 200 ENSEMBLE MODEL REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1YCN REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 1YCN. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.43900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 113.43900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.77150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.46800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.77150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.46800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 113.43900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.77150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.46800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.43900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.77150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.46800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 GLY A 26 REMARK 465 1 TRP A 27 REMARK 465 1 GLY A 28 REMARK 465 1 THR A 29 REMARK 465 1 ASN A 30 REMARK 465 1 PHE B 24 REMARK 465 1 GLU B 25 REMARK 465 1 GLY B 26 REMARK 465 1 TRP B 27 REMARK 465 1 GLY B 28 REMARK 465 1 THR B 29 REMARK 465 1 ASN B 30 REMARK 465 1 LYS B 67 REMARK 465 1 GLU B 68 REMARK 465 1 LEU B 69 REMARK 465 2 GLY A 26 REMARK 465 2 TRP A 27 REMARK 465 2 GLY A 28 REMARK 465 2 THR A 29 REMARK 465 2 ASN A 30 REMARK 465 2 PHE B 24 REMARK 465 2 GLU B 25 REMARK 465 2 GLY B 26 REMARK 465 2 TRP B 27 REMARK 465 2 GLY B 28 REMARK 465 2 THR B 29 REMARK 465 2 ASN B 30 REMARK 465 2 LYS B 67 REMARK 465 2 GLU B 68 REMARK 465 2 LEU B 69 REMARK 465 3 GLY A 26 REMARK 465 3 TRP A 27 REMARK 465 3 GLY A 28 REMARK 465 3 THR A 29 REMARK 465 3 ASN A 30 REMARK 465 3 PHE B 24 REMARK 465 3 GLU B 25 REMARK 465 3 GLY B 26 REMARK 465 3 TRP B 27 REMARK 465 3 GLY B 28 REMARK 465 3 THR B 29 REMARK 465 3 ASN B 30 REMARK 465 3 LYS B 67 REMARK 465 3 GLU B 68 REMARK 465 3 LEU B 69 REMARK 465 4 GLY A 26 REMARK 465 4 TRP A 27 REMARK 465 4 GLY A 28 REMARK 465 4 THR A 29 REMARK 465 4 ASN A 30 REMARK 465 4 PHE B 24 REMARK 465 4 GLU B 25 REMARK 465 4 GLY B 26 REMARK 465 4 TRP B 27 REMARK 465 4 GLY B 28 REMARK 465 4 THR B 29 REMARK 465 4 ASN B 30 REMARK 465 4 LYS B 67 REMARK 465 4 GLU B 68 REMARK 465 4 LEU B 69 REMARK 465 5 GLY A 26 REMARK 465 5 TRP A 27 REMARK 465 5 GLY A 28 REMARK 465 5 THR A 29 REMARK 465 5 ASN A 30 REMARK 465 5 PHE B 24 REMARK 465 5 GLU B 25 REMARK 465 5 GLY B 26 REMARK 465 5 TRP B 27 REMARK 465 5 GLY B 28 REMARK 465 5 THR B 29 REMARK 465 5 ASN B 30 REMARK 465 5 LYS B 67 REMARK 465 5 GLU B 68 REMARK 465 5 LEU B 69 REMARK 465 6 GLY A 26 REMARK 465 6 TRP A 27 REMARK 465 6 GLY A 28 REMARK 465 6 THR A 29 REMARK 465 6 ASN A 30 REMARK 465 6 PHE B 24 REMARK 465 6 GLU B 25 REMARK 465 6 GLY B 26 REMARK 465 6 TRP B 27 REMARK 465 6 GLY B 28 REMARK 465 6 THR B 29 REMARK 465 6 ASN B 30 REMARK 465 6 LYS B 67 REMARK 465 6 GLU B 68 REMARK 465 6 LEU B 69 REMARK 465 7 GLY A 26 REMARK 465 7 TRP A 27 REMARK 465 7 GLY A 28 REMARK 465 7 THR A 29 REMARK 465 7 ASN A 30 REMARK 465 7 PHE B 24 REMARK 465 7 GLU B 25 REMARK 465 7 GLY B 26 REMARK 465 7 TRP B 27 REMARK 465 7 GLY B 28 REMARK 465 7 THR B 29 REMARK 465 7 ASN B 30 REMARK 465 7 LYS B 67 REMARK 465 7 GLU B 68 REMARK 465 7 LEU B 69 REMARK 465 8 GLY A 26 REMARK 465 8 TRP A 27 REMARK 465 8 GLY A 28 REMARK 465 8 THR A 29 REMARK 465 8 ASN A 30 REMARK 465 8 PHE B 24 REMARK 465 8 GLU B 25 REMARK 465 8 GLY B 26 REMARK 465 8 TRP B 27 REMARK 465 8 GLY B 28 REMARK 465 8 THR B 29 REMARK 465 8 ASN B 30 REMARK 465 8 LYS B 67 REMARK 465 8 GLU B 68 REMARK 465 8 LEU B 69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 4 126.16 -37.49 REMARK 500 1 PRO A 11 -170.39 -68.93 REMARK 500 1 ILE A 37 -70.11 -106.32 REMARK 500 1 HIS A 40 12.33 -143.69 REMARK 500 1 GLU A 59 120.89 169.28 REMARK 500 1 GLU A 68 -89.52 -66.10 REMARK 500 1 LEU A 69 103.30 -51.58 REMARK 500 1 ARG A 98 48.49 -105.54 REMARK 500 1 THR A 114 -164.98 -68.92 REMARK 500 1 LYS A 130 14.57 50.69 REMARK 500 1 GLU A 159 60.14 -115.74 REMARK 500 1 GLU A 162 127.73 -29.99 REMARK 500 1 LEU A 193 19.81 -68.37 REMARK 500 1 HIS A 212 -51.73 -145.61 REMARK 500 1 GLU A 221 52.87 -68.46 REMARK 500 1 GLU A 222 -5.08 -159.30 REMARK 500 1 ASP A 224 160.86 -47.35 REMARK 500 1 SER A 253 -79.27 -59.14 REMARK 500 1 LYS A 257 30.32 70.71 REMARK 500 1 ILE A 275 -90.27 -117.54 REMARK 500 1 LYS A 298 -102.13 -54.66 REMARK 500 1 ARG A 301 58.45 -157.26 REMARK 500 1 GLU A 314 78.94 -68.82 REMARK 500 1 ALA B 2 -164.47 -71.34 REMARK 500 1 THR B 3 -71.99 -125.48 REMARK 500 1 LEU B 4 143.49 -35.35 REMARK 500 1 VAL B 6 91.19 -69.92 REMARK 500 1 ASP B 32 15.38 -145.98 REMARK 500 1 LEU B 38 -71.36 -62.67 REMARK 500 1 ALA B 39 14.01 -65.59 REMARK 500 1 ALA B 43 -39.95 -38.49 REMARK 500 1 ASN B 71 138.90 -171.44 REMARK 500 1 ASP B 88 -85.44 -51.86 REMARK 500 1 TRP B 99 149.52 -38.34 REMARK 500 1 VAL B 105 -9.68 -58.06 REMARK 500 1 GLU B 108 -85.05 -27.95 REMARK 500 1 VAL B 109 -37.81 -35.82 REMARK 500 1 THR B 114 -175.14 -68.39 REMARK 500 1 GLU B 162 140.58 -38.22 REMARK 500 1 LYS B 198 -65.62 -11.69 REMARK 500 1 THR B 241 -71.65 -88.61 REMARK 500 1 PRO B 243 -78.95 -38.08 REMARK 500 1 GLU B 244 -36.98 -33.77 REMARK 500 1 LEU B 245 7.34 -69.90 REMARK 500 1 ASN B 256 22.96 -73.96 REMARK 500 1 LYS B 257 44.72 29.73 REMARK 500 1 ILE B 275 -78.42 -138.08 REMARK 500 1 ASP B 276 16.44 -142.72 REMARK 500 1 SER B 289 -36.59 67.97 REMARK 500 1 ARG B 301 55.74 -147.79 REMARK 500 REMARK 500 THIS ENTRY HAS 389 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.4020 RELATED DB: TARGETDB REMARK 900 RELATED ID: 1YCN RELATED DB: PDB REMARK 900 ORIGINAL REFINEMENT BASED ON SAME DATA AND R-FREE SET. DBREF 2Q4C A 2 317 UNP Q9SYT0 ANXD1_ARATH 2 317 DBREF 2Q4C B 2 317 UNP Q9SYT0 ANXD1_ARATH 2 317 SEQADV 2Q4C SER A 1 UNP Q9SYT0 EXPRESSION TAG SEQADV 2Q4C SER B 1 UNP Q9SYT0 EXPRESSION TAG SEQRES 1 A 317 SER ALA THR LEU LYS VAL SER ASP SER VAL PRO ALA PRO SEQRES 2 A 317 SER ASP ASP ALA GLU GLN LEU ARG THR ALA PHE GLU GLY SEQRES 3 A 317 TRP GLY THR ASN GLU ASP LEU ILE ILE SER ILE LEU ALA SEQRES 4 A 317 HIS ARG SER ALA GLU GLN ARG LYS VAL ILE ARG GLN ALA SEQRES 5 A 317 TYR HIS GLU THR TYR GLY GLU ASP LEU LEU LYS THR LEU SEQRES 6 A 317 ASP LYS GLU LEU SER ASN ASP PHE GLU ARG ALA ILE LEU SEQRES 7 A 317 LEU TRP THR LEU GLU PRO GLY GLU ARG ASP ALA LEU LEU SEQRES 8 A 317 ALA ASN GLU ALA THR LYS ARG TRP THR SER SER ASN GLN SEQRES 9 A 317 VAL LEU MET GLU VAL ALA CYS THR ARG THR SER THR GLN SEQRES 10 A 317 LEU LEU HIS ALA ARG GLN ALA TYR HIS ALA ARG TYR LYS SEQRES 11 A 317 LYS SER LEU GLU GLU ASP VAL ALA HIS HIS THR THR GLY SEQRES 12 A 317 ASP PHE ARG LYS LEU LEU VAL SER LEU VAL THR SER TYR SEQRES 13 A 317 ARG TYR GLU GLY ASP GLU VAL ASN MET THR LEU ALA LYS SEQRES 14 A 317 GLN GLU ALA LYS LEU VAL HIS GLU LYS ILE LYS ASP LYS SEQRES 15 A 317 HIS TYR ASN ASP GLU ASP VAL ILE ARG ILE LEU SER THR SEQRES 16 A 317 ARG SER LYS ALA GLN ILE ASN ALA THR PHE ASN ARG TYR SEQRES 17 A 317 GLN ASP ASP HIS GLY GLU GLU ILE LEU LYS SER LEU GLU SEQRES 18 A 317 GLU GLY ASP ASP ASP ASP LYS PHE LEU ALA LEU LEU ARG SEQRES 19 A 317 SER THR ILE GLN CYS LEU THR ARG PRO GLU LEU TYR PHE SEQRES 20 A 317 VAL ASP VAL LEU ARG SER ALA ILE ASN LYS THR GLY THR SEQRES 21 A 317 ASP GLU GLY ALA LEU THR ARG ILE VAL THR THR ARG ALA SEQRES 22 A 317 GLU ILE ASP LEU LYS VAL ILE GLY GLU GLU TYR GLN ARG SEQRES 23 A 317 ARG ASN SER ILE PRO LEU GLU LYS ALA ILE THR LYS ASP SEQRES 24 A 317 THR ARG GLY ASP TYR GLU LYS MET LEU VAL ALA LEU LEU SEQRES 25 A 317 GLY GLU ASP ASP ALA SEQRES 1 B 317 SER ALA THR LEU LYS VAL SER ASP SER VAL PRO ALA PRO SEQRES 2 B 317 SER ASP ASP ALA GLU GLN LEU ARG THR ALA PHE GLU GLY SEQRES 3 B 317 TRP GLY THR ASN GLU ASP LEU ILE ILE SER ILE LEU ALA SEQRES 4 B 317 HIS ARG SER ALA GLU GLN ARG LYS VAL ILE ARG GLN ALA SEQRES 5 B 317 TYR HIS GLU THR TYR GLY GLU ASP LEU LEU LYS THR LEU SEQRES 6 B 317 ASP LYS GLU LEU SER ASN ASP PHE GLU ARG ALA ILE LEU SEQRES 7 B 317 LEU TRP THR LEU GLU PRO GLY GLU ARG ASP ALA LEU LEU SEQRES 8 B 317 ALA ASN GLU ALA THR LYS ARG TRP THR SER SER ASN GLN SEQRES 9 B 317 VAL LEU MET GLU VAL ALA CYS THR ARG THR SER THR GLN SEQRES 10 B 317 LEU LEU HIS ALA ARG GLN ALA TYR HIS ALA ARG TYR LYS SEQRES 11 B 317 LYS SER LEU GLU GLU ASP VAL ALA HIS HIS THR THR GLY SEQRES 12 B 317 ASP PHE ARG LYS LEU LEU VAL SER LEU VAL THR SER TYR SEQRES 13 B 317 ARG TYR GLU GLY ASP GLU VAL ASN MET THR LEU ALA LYS SEQRES 14 B 317 GLN GLU ALA LYS LEU VAL HIS GLU LYS ILE LYS ASP LYS SEQRES 15 B 317 HIS TYR ASN ASP GLU ASP VAL ILE ARG ILE LEU SER THR SEQRES 16 B 317 ARG SER LYS ALA GLN ILE ASN ALA THR PHE ASN ARG TYR SEQRES 17 B 317 GLN ASP ASP HIS GLY GLU GLU ILE LEU LYS SER LEU GLU SEQRES 18 B 317 GLU GLY ASP ASP ASP ASP LYS PHE LEU ALA LEU LEU ARG SEQRES 19 B 317 SER THR ILE GLN CYS LEU THR ARG PRO GLU LEU TYR PHE SEQRES 20 B 317 VAL ASP VAL LEU ARG SER ALA ILE ASN LYS THR GLY THR SEQRES 21 B 317 ASP GLU GLY ALA LEU THR ARG ILE VAL THR THR ARG ALA SEQRES 22 B 317 GLU ILE ASP LEU LYS VAL ILE GLY GLU GLU TYR GLN ARG SEQRES 23 B 317 ARG ASN SER ILE PRO LEU GLU LYS ALA ILE THR LYS ASP SEQRES 24 B 317 THR ARG GLY ASP TYR GLU LYS MET LEU VAL ALA LEU LEU SEQRES 25 B 317 GLY GLU ASP ASP ALA FORMUL 3 HOH *281(H2 O) HELIX 1 1 ALA A 12 GLU A 25 1 14 HELIX 2 2 GLU A 31 ALA A 39 1 9 HELIX 3 3 SER A 42 GLY A 58 1 17 HELIX 4 4 ASN A 71 LEU A 82 1 12 HELIX 5 5 GLU A 83 LEU A 90 1 8 HELIX 6 6 LEU A 90 ARG A 98 1 9 HELIX 7 7 GLN A 104 THR A 112 1 9 HELIX 8 8 THR A 114 GLN A 123 1 10 HELIX 9 9 SER A 132 THR A 141 1 10 HELIX 10 10 THR A 142 THR A 154 1 13 HELIX 11 11 ASN A 164 LYS A 182 1 19 HELIX 12 12 ASP A 186 ARG A 196 1 11 HELIX 13 13 SER A 197 ASP A 211 1 15 HELIX 14 14 GLU A 215 LEU A 220 1 6 HELIX 15 15 ASP A 227 CYS A 239 1 13 HELIX 16 16 PRO A 243 LYS A 257 1 15 HELIX 17 17 GLY A 263 GLU A 274 1 12 HELIX 18 18 ASP A 276 SER A 289 1 14 HELIX 19 19 PRO A 291 THR A 297 1 7 HELIX 20 20 GLY A 302 LEU A 311 1 10 HELIX 21 21 ALA B 12 ALA B 23 1 12 HELIX 22 22 ILE B 37 ARG B 41 5 5 HELIX 23 23 SER B 42 GLY B 58 1 17 HELIX 24 24 LEU B 62 ASP B 66 5 5 HELIX 25 25 ASN B 71 LEU B 82 1 12 HELIX 26 26 GLU B 83 ARG B 98 1 16 HELIX 27 27 GLN B 104 ARG B 113 1 10 HELIX 28 28 THR B 114 LYS B 130 1 17 HELIX 29 29 SER B 132 THR B 141 1 10 HELIX 30 30 THR B 142 SER B 155 1 14 HELIX 31 31 ASN B 164 LYS B 180 1 17 HELIX 32 32 ASP B 186 ARG B 196 1 11 HELIX 33 33 SER B 197 GLY B 213 1 17 HELIX 34 34 GLU B 215 GLU B 221 1 7 HELIX 35 35 ASP B 227 ARG B 242 1 16 HELIX 36 36 PRO B 243 ASN B 256 1 14 HELIX 37 37 GLY B 263 ALA B 273 1 11 HELIX 38 38 ASP B 276 ASN B 288 1 13 HELIX 39 39 PRO B 291 THR B 297 1 7 HELIX 40 40 GLY B 302 LEU B 312 1 11 CRYST1 75.543 96.936 226.878 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013237 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010316 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004408 0.00000 MODEL 1