HEADER HYDROLASE 31-MAY-07 2Q4T TITLE ENSEMBLE REFINEMENT OF THE PROTEIN CRYSTAL STRUCTURE OF A CYTOSOLIC TITLE 2 5'-NUCLEOTIDASE III FROM MUS MUSCULUS MM.158936 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC 5'-NUCLEOTIDASE III; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CN-III, PYRIMIDINE 5'-NUCLEOTIDASE 1, P5'N-1, P5N-1, PN-I, COMPND 5 LUPIN; COMPND 6 EC: 3.1.3.5; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: ISOFORM 1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NT5C3, VSP_021566; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP16 KEYWDS ENSEMBLE REFINEMENT, REFINEMENT METHODOLOGY DEVELOPMENT, UMPH-1, KEYWDS 2 CYTOSOLIC 5'-NUCLEOTIDASE III, NT5C3 PROTEIN, AAH38029, BC038029, KEYWDS 3 MM.158936, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 4 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, HYDROLASE EXPDTA X-RAY DIFFRACTION NUMMDL 4 AUTHOR E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 7 06-NOV-24 2Q4T 1 REMARK REVDAT 6 15-NOV-23 2Q4T 1 REMARK REVDAT 5 30-AUG-23 2Q4T 1 REMARK SEQADV LINK REVDAT 4 10-AUG-11 2Q4T 1 REMARK REVDAT 3 24-FEB-09 2Q4T 1 VERSN REVDAT 2 02-OCT-07 2Q4T 1 JRNL REVDAT 1 19-JUN-07 2Q4T 0 JRNL AUTH E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JRNL TITL ENSEMBLE REFINEMENT OF PROTEIN CRYSTAL STRUCTURES: JRNL TITL 2 VALIDATION AND APPLICATION. JRNL REF STRUCTURE V. 15 1040 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850744 JRNL DOI 10.1016/J.STR.2007.06.019 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.BITTO,C.A.BINGMAN,G.E.WESENBERG,J.G.MCCOY,G.N.PHILLIPS REMARK 1 TITL STRUCTURE OF PYRIMIDINE 5'-NUCLEOTIDASE TYPE 1: INSIGHT INTO REMARK 1 TITL 2 MECHANISM OF ACTION AND INHIBITION DURING LEAD POISONING. REMARK 1 REF J.BIOL.CHEM. V. 281 20521 2006 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 16672222 REMARK 1 DOI 10.1074/JBC.M602000200 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD USING AMPLITUDES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1771130.875 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 31910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1619 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4724 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 259 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.890 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.540 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 48.48 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : EPE_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS PDB ENTRY IS A RE-REFINEMENT USING AN ENSEMBLE MODEL OF THE REMARK 3 PREVIOUSLY REMARK 3 DEPOSITED SINGLE-CONFORMER STRUCTURE 2BDU AND REMARK 3 THE FIRST DATA SET IN THE DEPOSITED STRUCTURE FACTOR FILE REMARK 3 FOR 2BDU ALONG WITH THE R-FREE SET DEFINED THEREIN. THE COORDINATES REMARK 3 WERE GENERATED BY AN AUTOMATED PROTOCOL FROM AN INITIAL MODEL REMARK 3 CONSISTING REMARK 3 OF 4 IDENTICAL COPIES OF THE PROTEIN AND NON-WATER REMARK 3 HETERO-ATOMS ASSIGNED FRACTIONAL OCCUPANCIES ADDING UP TO ONE, AND REMARK 3 A REMARK 3 SINGLE COPY OF THE SOLVENT MOLECULES. REFINEMENT WAS CARRIED OUT REMARK 3 WITH REMARK 3 ALL THE CONFORMERS PRESENT SIMULTANEOUSLY AND WITH THE POTENTIAL REMARK 3 ENERGY REMARK 3 TERMS CORRESPONDING TO INTERACTIONS BETWEEN THE DIFFERENT REMARK 3 CONFORMERS REMARK 3 EXCLUDED. THE HELIX AND SHEET RECORDS WERE CALCULATED USING REMARK 3 COORDINATES REMARK 3 FROM THE FIRST CONFORMER ONLY. THE STRUCTURE VISUALIZATION PROGRAM REMARK 3 PYMOL IS WELL-SUITED FOR DIRECTLY VIEWING THE ENSEMBLE MODEL REMARK 3 PRESENTED IN THIS PDB FILE. REMARK 4 REMARK 4 2Q4T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RE-REFINEMENT USING REMARK 200 ENSEMBLE MODEL REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 2BDU REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 2BDU. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.92600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.96300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 SER A 1 REMARK 465 1 THR A 2 REMARK 465 1 ASN A 3 REMARK 465 1 GLN A 4 REMARK 465 1 GLU A 5 REMARK 465 1 SER A 6 REMARK 465 1 SER B 1 REMARK 465 1 THR B 2 REMARK 465 1 ASN B 3 REMARK 465 1 GLN B 4 REMARK 465 1 GLU B 5 REMARK 465 1 SER B 6 REMARK 465 2 SER A 1 REMARK 465 2 THR A 2 REMARK 465 2 ASN A 3 REMARK 465 2 GLN A 4 REMARK 465 2 GLU A 5 REMARK 465 2 SER A 6 REMARK 465 2 SER B 1 REMARK 465 2 THR B 2 REMARK 465 2 ASN B 3 REMARK 465 2 GLN B 4 REMARK 465 2 GLU B 5 REMARK 465 2 SER B 6 REMARK 465 3 SER A 1 REMARK 465 3 THR A 2 REMARK 465 3 ASN A 3 REMARK 465 3 GLN A 4 REMARK 465 3 GLU A 5 REMARK 465 3 SER A 6 REMARK 465 3 SER B 1 REMARK 465 3 THR B 2 REMARK 465 3 ASN B 3 REMARK 465 3 GLN B 4 REMARK 465 3 GLU B 5 REMARK 465 3 SER B 6 REMARK 465 4 SER A 1 REMARK 465 4 THR A 2 REMARK 465 4 ASN A 3 REMARK 465 4 GLN A 4 REMARK 465 4 GLU A 5 REMARK 465 4 SER A 6 REMARK 465 4 SER B 1 REMARK 465 4 THR B 2 REMARK 465 4 ASN B 3 REMARK 465 4 GLN B 4 REMARK 465 4 GLU B 5 REMARK 465 4 SER B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 25 76.95 -114.41 REMARK 500 1 PHE A 50 -71.72 -114.88 REMARK 500 1 ASN A 60 40.93 35.77 REMARK 500 1 LYS A 75 34.25 -80.21 REMARK 500 1 GLU A 105 25.22 -71.97 REMARK 500 1 SER A 138 -171.91 -57.19 REMARK 500 1 PHE A 149 -72.66 -62.71 REMARK 500 1 ASP A 193 77.73 -112.51 REMARK 500 1 PHE A 194 176.23 -55.66 REMARK 500 1 ASP A 195 -157.34 -107.83 REMARK 500 1 LYS A 201 -11.07 -143.89 REMARK 500 1 ASP A 247 10.53 -63.89 REMARK 500 1 ALA A 250 -73.67 -51.45 REMARK 500 1 ARG A 264 46.74 38.46 REMARK 500 1 ASP A 266 33.22 -73.31 REMARK 500 1 GLU A 267 -53.10 -120.15 REMARK 500 1 LYS A 282 85.48 51.77 REMARK 500 1 ALA B 41 -70.04 -59.78 REMARK 500 1 ALA B 42 -24.23 -35.14 REMARK 500 1 ASN B 60 -11.91 52.33 REMARK 500 1 GLN B 91 -70.30 -99.92 REMARK 500 1 VAL B 100 -74.70 -66.52 REMARK 500 1 LEU B 101 177.71 -51.37 REMARK 500 1 SER B 138 178.63 -58.65 REMARK 500 1 ASP B 195 -152.98 -106.24 REMARK 500 1 GLU B 196 -70.95 -43.11 REMARK 500 1 ASN B 197 31.45 -84.99 REMARK 500 1 LYS B 219 28.75 -66.50 REMARK 500 1 ALA B 250 -75.49 -48.25 REMARK 500 1 GLU B 253 -60.13 -90.54 REMARK 500 1 ARG B 264 59.66 37.99 REMARK 500 1 LYS B 282 79.68 29.37 REMARK 500 2 PRO A 26 16.98 -67.64 REMARK 500 2 ALA A 42 -24.77 -36.67 REMARK 500 2 ASN A 60 38.48 34.73 REMARK 500 2 LYS A 75 -3.90 -55.10 REMARK 500 2 ARG A 82 3.77 -60.97 REMARK 500 2 ASP A 98 119.76 -38.98 REMARK 500 2 LYS A 130 34.33 -88.87 REMARK 500 2 ASP A 137 50.69 -105.03 REMARK 500 2 ASP A 139 41.18 -93.36 REMARK 500 2 TYR A 181 68.11 -101.09 REMARK 500 2 LEU A 200 121.42 -37.46 REMARK 500 2 ASN A 220 30.62 -97.46 REMARK 500 2 ARG A 264 69.36 27.23 REMARK 500 2 GLN B 17 44.62 -90.77 REMARK 500 2 LYS B 24 -79.79 -86.55 REMARK 500 2 ALA B 42 -18.63 -42.98 REMARK 500 2 PHE B 50 -73.61 -120.67 REMARK 500 2 CYS B 74 -169.45 -72.87 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.36414 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2BDU RELATED DB: PDB REMARK 900 ORIGINAL REFINEMENT BASED ON SAME DATA AND R-FREE SET. DBREF 2Q4T A 2 297 UNP Q9D020 5NT3_MOUSE 2 297 DBREF 2Q4T B 2 297 UNP Q9D020 5NT3_MOUSE 2 297 SEQADV 2Q4T SER A 1 UNP Q9D020 EXPRESSION TAG SEQADV 2Q4T MSE A 12 UNP Q9D020 MET 12 MODIFIED RESIDUE SEQADV 2Q4T MSE A 13 UNP Q9D020 MET 13 MODIFIED RESIDUE SEQADV 2Q4T MSE A 52 UNP Q9D020 MET 52 MODIFIED RESIDUE SEQADV 2Q4T MSE A 110 UNP Q9D020 MET 110 MODIFIED RESIDUE SEQADV 2Q4T MSE A 141 UNP Q9D020 MET 141 MODIFIED RESIDUE SEQADV 2Q4T MSE A 192 UNP Q9D020 MET 192 MODIFIED RESIDUE SEQADV 2Q4T MSE A 245 UNP Q9D020 MET 245 MODIFIED RESIDUE SEQADV 2Q4T MSE A 273 UNP Q9D020 MET 273 MODIFIED RESIDUE SEQADV 2Q4T SER B 1 UNP Q9D020 EXPRESSION TAG SEQADV 2Q4T MSE B 12 UNP Q9D020 MET 12 MODIFIED RESIDUE SEQADV 2Q4T MSE B 13 UNP Q9D020 MET 13 MODIFIED RESIDUE SEQADV 2Q4T MSE B 52 UNP Q9D020 MET 52 MODIFIED RESIDUE SEQADV 2Q4T MSE B 110 UNP Q9D020 MET 110 MODIFIED RESIDUE SEQADV 2Q4T MSE B 141 UNP Q9D020 MET 141 MODIFIED RESIDUE SEQADV 2Q4T MSE B 192 UNP Q9D020 MET 192 MODIFIED RESIDUE SEQADV 2Q4T MSE B 245 UNP Q9D020 MET 245 MODIFIED RESIDUE SEQADV 2Q4T MSE B 273 UNP Q9D020 MET 273 MODIFIED RESIDUE SEQRES 1 A 297 SER THR ASN GLN GLU SER ALA VAL HIS LEU LYS MSE MSE SEQRES 2 A 297 PRO GLU PHE GLN LYS SER SER VAL ARG ILE LYS ASN PRO SEQRES 3 A 297 THR ARG VAL GLU GLU ILE ILE CYS GLY LEU ILE LYS GLY SEQRES 4 A 297 GLY ALA ALA LYS LEU GLN ILE ILE THR ASP PHE ASP MSE SEQRES 5 A 297 THR LEU SER ARG PHE SER TYR ASN GLY LYS ARG CYS PRO SEQRES 6 A 297 THR CYS HIS ASN ILE ILE ASP ASN CYS LYS LEU VAL THR SEQRES 7 A 297 ASP GLU CYS ARG ARG LYS LEU LEU GLN LEU LYS GLU GLN SEQRES 8 A 297 TYR TYR ALA ILE GLU VAL ASP PRO VAL LEU THR VAL GLU SEQRES 9 A 297 GLU LYS PHE PRO TYR MSE VAL GLU TRP TYR THR LYS SER SEQRES 10 A 297 HIS GLY LEU LEU ILE GLU GLN GLY ILE PRO LYS ALA LYS SEQRES 11 A 297 LEU LYS GLU ILE VAL ALA ASP SER ASP VAL MSE LEU LYS SEQRES 12 A 297 GLU GLY TYR GLU ASN PHE PHE GLY LYS LEU GLN GLN HIS SEQRES 13 A 297 GLY ILE PRO VAL PHE ILE PHE SER ALA GLY ILE GLY ASP SEQRES 14 A 297 VAL LEU GLU GLU VAL ILE ARG GLN ALA GLY VAL TYR HIS SEQRES 15 A 297 SER ASN VAL LYS VAL VAL SER ASN PHE MSE ASP PHE ASP SEQRES 16 A 297 GLU ASN GLY VAL LEU LYS GLY PHE LYS GLY GLU LEU ILE SEQRES 17 A 297 HIS VAL PHE ASN LYS HIS ASP GLY ALA LEU LYS ASN THR SEQRES 18 A 297 ASP TYR PHE SER GLN LEU LYS ASP ASN SER ASN ILE ILE SEQRES 19 A 297 LEU LEU GLY ASP SER GLN GLY ASP LEU ARG MSE ALA ASP SEQRES 20 A 297 GLY VAL ALA ASN VAL GLU HIS ILE LEU LYS ILE GLY TYR SEQRES 21 A 297 LEU ASN ASP ARG VAL ASP GLU LEU LEU GLU LYS TYR MSE SEQRES 22 A 297 ASP SER TYR ASP ILE VAL LEU VAL LYS GLU GLU SER LEU SEQRES 23 A 297 GLU VAL VAL ASN SER ILE LEU GLN LYS THR LEU SEQRES 1 B 297 SER THR ASN GLN GLU SER ALA VAL HIS LEU LYS MSE MSE SEQRES 2 B 297 PRO GLU PHE GLN LYS SER SER VAL ARG ILE LYS ASN PRO SEQRES 3 B 297 THR ARG VAL GLU GLU ILE ILE CYS GLY LEU ILE LYS GLY SEQRES 4 B 297 GLY ALA ALA LYS LEU GLN ILE ILE THR ASP PHE ASP MSE SEQRES 5 B 297 THR LEU SER ARG PHE SER TYR ASN GLY LYS ARG CYS PRO SEQRES 6 B 297 THR CYS HIS ASN ILE ILE ASP ASN CYS LYS LEU VAL THR SEQRES 7 B 297 ASP GLU CYS ARG ARG LYS LEU LEU GLN LEU LYS GLU GLN SEQRES 8 B 297 TYR TYR ALA ILE GLU VAL ASP PRO VAL LEU THR VAL GLU SEQRES 9 B 297 GLU LYS PHE PRO TYR MSE VAL GLU TRP TYR THR LYS SER SEQRES 10 B 297 HIS GLY LEU LEU ILE GLU GLN GLY ILE PRO LYS ALA LYS SEQRES 11 B 297 LEU LYS GLU ILE VAL ALA ASP SER ASP VAL MSE LEU LYS SEQRES 12 B 297 GLU GLY TYR GLU ASN PHE PHE GLY LYS LEU GLN GLN HIS SEQRES 13 B 297 GLY ILE PRO VAL PHE ILE PHE SER ALA GLY ILE GLY ASP SEQRES 14 B 297 VAL LEU GLU GLU VAL ILE ARG GLN ALA GLY VAL TYR HIS SEQRES 15 B 297 SER ASN VAL LYS VAL VAL SER ASN PHE MSE ASP PHE ASP SEQRES 16 B 297 GLU ASN GLY VAL LEU LYS GLY PHE LYS GLY GLU LEU ILE SEQRES 17 B 297 HIS VAL PHE ASN LYS HIS ASP GLY ALA LEU LYS ASN THR SEQRES 18 B 297 ASP TYR PHE SER GLN LEU LYS ASP ASN SER ASN ILE ILE SEQRES 19 B 297 LEU LEU GLY ASP SER GLN GLY ASP LEU ARG MSE ALA ASP SEQRES 20 B 297 GLY VAL ALA ASN VAL GLU HIS ILE LEU LYS ILE GLY TYR SEQRES 21 B 297 LEU ASN ASP ARG VAL ASP GLU LEU LEU GLU LYS TYR MSE SEQRES 22 B 297 ASP SER TYR ASP ILE VAL LEU VAL LYS GLU GLU SER LEU SEQRES 23 B 297 GLU VAL VAL ASN SER ILE LEU GLN LYS THR LEU MODRES 2Q4T MSE A 12 MET SELENOMETHIONINE MODRES 2Q4T MSE A 13 MET SELENOMETHIONINE MODRES 2Q4T MSE A 52 MET SELENOMETHIONINE MODRES 2Q4T MSE A 110 MET SELENOMETHIONINE MODRES 2Q4T MSE A 141 MET SELENOMETHIONINE MODRES 2Q4T MSE A 192 MET SELENOMETHIONINE MODRES 2Q4T MSE A 245 MET SELENOMETHIONINE MODRES 2Q4T MSE A 273 MET SELENOMETHIONINE MODRES 2Q4T MSE B 12 MET SELENOMETHIONINE MODRES 2Q4T MSE B 13 MET SELENOMETHIONINE MODRES 2Q4T MSE B 52 MET SELENOMETHIONINE MODRES 2Q4T MSE B 110 MET SELENOMETHIONINE MODRES 2Q4T MSE B 141 MET SELENOMETHIONINE MODRES 2Q4T MSE B 192 MET SELENOMETHIONINE MODRES 2Q4T MSE B 245 MET SELENOMETHIONINE MODRES 2Q4T MSE B 273 MET SELENOMETHIONINE HET MSE A 12 8 HET MSE A 13 8 HET MSE A 52 8 HET MSE A 110 8 HET MSE A 141 8 HET MSE A 192 8 HET MSE A 245 8 HET MSE A 273 8 HET MSE B 12 8 HET MSE B 13 8 HET MSE B 52 8 HET MSE B 110 8 HET MSE B 141 8 HET MSE B 192 8 HET MSE B 245 8 HET MSE B 273 8 HET EPE A 401 15 HET EPE B 402 15 HETNAM MSE SELENOMETHIONINE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 EPE 2(C8 H18 N2 O4 S) FORMUL 5 HOH *359(H2 O) HELIX 1 1 HIS A 9 LYS A 18 5 10 HELIX 2 2 ASN A 25 LYS A 43 1 19 HELIX 3 3 THR A 66 ASN A 73 1 8 HELIX 4 4 THR A 78 VAL A 97 1 20 HELIX 5 5 THR A 102 GLU A 105 5 4 HELIX 6 6 LYS A 106 GLN A 124 1 19 HELIX 7 7 PRO A 127 SER A 138 1 12 HELIX 8 8 GLY A 145 HIS A 156 1 12 HELIX 9 9 GLY A 168 ALA A 178 1 11 HELIX 10 10 ASN A 212 LYS A 219 1 8 HELIX 11 11 ASN A 220 GLN A 226 1 7 HELIX 12 12 GLN A 240 MSE A 245 5 6 HELIX 13 13 ARG A 264 TYR A 276 1 13 HELIX 14 14 LEU A 286 LEU A 297 1 12 HELIX 15 15 MSE B 13 LYS B 18 5 6 HELIX 16 16 ASN B 25 GLY B 40 1 16 HELIX 17 17 THR B 66 ASN B 73 1 8 HELIX 18 18 THR B 78 GLN B 91 1 14 HELIX 19 19 GLN B 91 VAL B 97 1 7 HELIX 20 20 THR B 102 ILE B 122 1 21 HELIX 21 21 GLU B 123 GLY B 125 5 3 HELIX 22 22 PRO B 127 ALA B 129 5 3 HELIX 23 23 LYS B 130 SER B 138 1 9 HELIX 24 24 GLY B 145 GLY B 157 1 13 HELIX 25 25 ILE B 167 ALA B 178 1 12 HELIX 26 26 ASN B 212 LYS B 219 1 8 HELIX 27 27 ASN B 220 GLN B 226 1 7 HELIX 28 28 SER B 239 MSE B 245 5 7 HELIX 29 29 ARG B 264 ASP B 274 1 11 HELIX 30 30 LEU B 286 LEU B 297 1 12 SHEET 1 A 7 VAL A 21 ILE A 23 0 SHEET 2 A 7 ILE A 278 VAL A 281 -1 O VAL A 279 N ARG A 22 SHEET 3 A 7 HIS A 254 LEU A 261 1 N GLY A 259 O LEU A 280 SHEET 4 A 7 ASN A 232 GLY A 237 1 N LEU A 235 O LEU A 256 SHEET 5 A 7 LEU A 44 THR A 48 1 N GLN A 45 O ASN A 232 SHEET 6 A 7 VAL A 160 ILE A 167 1 O PHE A 163 N THR A 48 SHEET 7 A 7 VAL A 185 ASN A 190 1 O LYS A 186 N VAL A 160 SHEET 1 B 2 SER A 58 TYR A 59 0 SHEET 2 B 2 LYS A 62 ARG A 63 -1 O LYS A 62 N TYR A 59 SHEET 1 C 6 VAL B 185 VAL B 188 0 SHEET 2 C 6 VAL B 160 PHE B 163 1 N VAL B 160 O LYS B 186 SHEET 3 C 6 LEU B 44 THR B 48 1 N ILE B 46 O PHE B 161 SHEET 4 C 6 ASN B 232 GLY B 237 1 O ILE B 234 N ILE B 47 SHEET 5 C 6 HIS B 254 LEU B 261 1 O ILE B 258 N LEU B 235 SHEET 6 C 6 ILE B 278 VAL B 281 1 O LEU B 280 N GLY B 259 LINK C LYS A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N PRO A 14 1555 1555 1.34 LINK C ASP A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N THR A 53 1555 1555 1.33 LINK C TYR A 109 N MSE A 110 1555 1555 1.34 LINK C MSE A 110 N VAL A 111 1555 1555 1.33 LINK C VAL A 140 N MSE A 141 1555 1555 1.33 LINK C MSE A 141 N LEU A 142 1555 1555 1.33 LINK C PHE A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N ASP A 193 1555 1555 1.33 LINK C ARG A 244 N MSE A 245 1555 1555 1.33 LINK C MSE A 245 N ALA A 246 1555 1555 1.33 LINK C TYR A 272 N MSE A 273 1555 1555 1.33 LINK C MSE A 273 N ASP A 274 1555 1555 1.33 LINK C LYS B 11 N MSE B 12 1555 1555 1.33 LINK C MSE B 12 N MSE B 13 1555 1555 1.33 LINK C MSE B 13 N PRO B 14 1555 1555 1.35 LINK C ASP B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N THR B 53 1555 1555 1.33 LINK C TYR B 109 N MSE B 110 1555 1555 1.34 LINK C MSE B 110 N VAL B 111 1555 1555 1.33 LINK C VAL B 140 N MSE B 141 1555 1555 1.32 LINK C MSE B 141 N LEU B 142 1555 1555 1.33 LINK C PHE B 191 N MSE B 192 1555 1555 1.33 LINK C MSE B 192 N ASP B 193 1555 1555 1.33 LINK C ARG B 244 N MSE B 245 1555 1555 1.33 LINK C MSE B 245 N ALA B 246 1555 1555 1.33 LINK C TYR B 272 N MSE B 273 1555 1555 1.33 LINK C MSE B 273 N ASP B 274 1555 1555 1.33 SITE 1 AC1 6 GLN A 294 LYS A 295 THR A 296 LEU A 297 SITE 2 AC1 6 HOH A 480 HOH A 530 SITE 1 AC2 6 GLN B 294 LYS B 295 THR B 296 LEU B 297 SITE 2 AC2 6 HOH B 479 HOH B 489 CRYST1 133.674 133.674 38.889 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007481 0.004319 0.000000 0.00000 SCALE2 0.000000 0.008638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025714 0.00000 MODEL 1