HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAY-07 2Q4U TITLE ENSEMBLE REFINEMENT OF THE CRYSTAL STRUCTURE OF AN EF-HAND PROTEIN TITLE 2 FROM DANIO RERIO DR.36843 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ZGC:100843; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 STRAIN: SINGAPORE LOCAL STRAIN; SOURCE 6 GENE: DR.36843, BC083168, ZGC:100843; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVP 16 KEYWDS ENSEMBLE REFINEMENT, REFINEMENT METHODOLOGY DEVELOPMENT, DR.36843, KEYWDS 2 BC083168, CALICIUM BINDING, EF-HAND SUPERFAMILY, STRUCTURAL KEYWDS 3 GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR EUKARYOTIC KEYWDS 4 STRUCTURAL GENOMICS, CESG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION NUMMDL 16 AUTHOR E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 7 30-OCT-24 2Q4U 1 REMARK REVDAT 6 15-NOV-23 2Q4U 1 REMARK REVDAT 5 30-AUG-23 2Q4U 1 SEQADV LINK REVDAT 4 10-AUG-11 2Q4U 1 REMARK REVDAT 3 24-FEB-09 2Q4U 1 VERSN REVDAT 2 02-OCT-07 2Q4U 1 JRNL REVDAT 1 19-JUN-07 2Q4U 0 JRNL AUTH E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JRNL TITL ENSEMBLE REFINEMENT OF PROTEIN CRYSTAL STRUCTURES: JRNL TITL 2 VALIDATION AND APPLICATION. JRNL REF STRUCTURE V. 15 1040 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850744 JRNL DOI 10.1016/J.STR.2007.06.019 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD USING AMPLITUDES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1451262.250 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 17332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 885 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2637 REMARK 3 BIN R VALUE (WORKING SET) : 0.1580 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.53000 REMARK 3 B22 (A**2) : -4.00000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.04 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.520 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.260 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.080 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.810 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 50.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS PDB ENTRY IS A RE-REFINEMENT USING AN ENSEMBLE MODEL OF THE REMARK 3 PREVIOUSLY REMARK 3 DEPOSITED SINGLE-CONFORMER STRUCTURE 2BE4 AND REMARK 3 THE FIRST DATA SET IN THE DEPOSITED STRUCTURE FACTOR FILE REMARK 3 FOR 2BE4 ALONG WITH THE R-FREE SET DEFINED THEREIN. THE COORDINATES REMARK 3 WERE GENERATED BY AN AUTOMATED PROTOCOL FROM AN INITIAL MODEL REMARK 3 CONSISTING REMARK 3 OF 16 IDENTICAL COPIES OF THE PROTEIN AND NON-WATER REMARK 3 HETERO-ATOMS ASSIGNED FRACTIONAL OCCUPANCIES ADDING UP TO ONE, AND REMARK 3 A REMARK 3 SINGLE COPY OF THE SOLVENT MOLECULES. REFINEMENT WAS CARRIED OUT REMARK 3 WITH REMARK 3 ALL THE CONFORMERS PRESENT SIMULTANEOUSLY AND WITH THE POTENTIAL REMARK 3 ENERGY REMARK 3 TERMS CORRESPONDING TO INTERACTIONS BETWEEN THE DIFFERENT REMARK 3 CONFORMERS REMARK 3 EXCLUDED. THE HELIX AND SHEET RECORDS WERE CALCULATED USING REMARK 3 COORDINATES REMARK 3 FROM THE FIRST CONFORMER ONLY. THE STRUCTURE VISUALIZATION PROGRAM REMARK 3 PYMOL IS WELL-SUITED FOR DIRECTLY VIEWING THE ENSEMBLE MODEL REMARK 3 PRESENTED IN THIS PDB FILE. REMARK 4 REMARK 4 2Q4U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RE-REFINEMENT USING REMARK 200 ENSEMBLE MODEL REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 2BE4 REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 2BE4. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.94200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.18200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.37400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.18200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.94200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.37400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 SER A 1 REMARK 465 1 ASP A 2 REMARK 465 2 SER A 1 REMARK 465 2 ASP A 2 REMARK 465 3 SER A 1 REMARK 465 3 ASP A 2 REMARK 465 4 SER A 1 REMARK 465 4 ASP A 2 REMARK 465 5 SER A 1 REMARK 465 5 ASP A 2 REMARK 465 6 SER A 1 REMARK 465 6 ASP A 2 REMARK 465 7 SER A 1 REMARK 465 7 ASP A 2 REMARK 465 8 SER A 1 REMARK 465 8 ASP A 2 REMARK 465 9 SER A 1 REMARK 465 9 ASP A 2 REMARK 465 10 SER A 1 REMARK 465 10 ASP A 2 REMARK 465 11 SER A 1 REMARK 465 11 ASP A 2 REMARK 465 12 SER A 1 REMARK 465 12 ASP A 2 REMARK 465 13 SER A 1 REMARK 465 13 ASP A 2 REMARK 465 14 SER A 1 REMARK 465 14 ASP A 2 REMARK 465 15 SER A 1 REMARK 465 15 ASP A 2 REMARK 465 16 SER A 1 REMARK 465 16 ASP A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PRO A 46 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 7 PRO A 46 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 11 PRO A 46 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 13 PRO A 46 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 15 PRO A 46 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 16 PRO A 46 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 64 154.72 -47.35 REMARK 500 1 ALA A 98 63.58 -150.59 REMARK 500 1 ASP A 101 40.96 -104.70 REMARK 500 1 ASP A 114 62.35 -155.92 REMARK 500 1 LYS A 138 13.09 52.31 REMARK 500 1 PHE A 180 -34.98 -36.90 REMARK 500 1 LEU A 182 57.10 -53.81 REMARK 500 1 ALA A 188 -90.34 -35.44 REMARK 500 1 VAL A 192 -73.19 -98.29 REMARK 500 1 MSE A 225 -67.49 -128.57 REMARK 500 1 PRO A 231 -174.94 -56.12 REMARK 500 1 ASP A 237 47.55 -83.76 REMARK 500 1 CYS A 249 -82.68 -150.14 REMARK 500 1 ASP A 250 154.83 -43.95 REMARK 500 1 MSE A 251 -95.12 -90.45 REMARK 500 1 ASN A 252 167.52 -47.47 REMARK 500 1 LYS A 253 41.81 -87.96 REMARK 500 2 ALA A 6 143.81 174.98 REMARK 500 2 PRO A 46 -4.31 -49.31 REMARK 500 2 ILE A 50 84.45 -54.69 REMARK 500 2 ASP A 114 66.65 -153.21 REMARK 500 2 LYS A 161 -2.13 57.67 REMARK 500 2 GLU A 178 116.85 -160.62 REMARK 500 2 LEU A 181 -87.55 -58.65 REMARK 500 2 LEU A 182 21.19 -62.17 REMARK 500 2 ARG A 209 38.82 73.21 REMARK 500 2 MSE A 226 -76.95 -63.85 REMARK 500 2 GLU A 227 -21.82 -33.34 REMARK 500 2 LYS A 240 -75.58 -57.16 REMARK 500 2 ASP A 250 84.84 -51.88 REMARK 500 2 MSE A 251 6.85 -64.97 REMARK 500 2 ASP A 254 -31.75 -36.27 REMARK 500 2 GLN A 258 172.93 -50.76 REMARK 500 2 GLU A 261 -73.58 -73.84 REMARK 500 3 ASP A 34 -72.79 -76.97 REMARK 500 3 ALA A 98 62.57 -179.05 REMARK 500 3 ASP A 114 63.86 -152.89 REMARK 500 3 SER A 117 64.07 60.62 REMARK 500 3 LYS A 161 12.08 47.29 REMARK 500 3 LEU A 182 18.27 -60.31 REMARK 500 3 GLN A 183 27.27 -70.22 REMARK 500 3 GLU A 193 -73.03 -58.67 REMARK 500 3 ALA A 212 118.74 -179.36 REMARK 500 3 GLU A 214 161.24 179.40 REMARK 500 3 ARG A 230 83.81 -150.45 REMARK 500 3 CYS A 249 -99.69 -80.44 REMARK 500 3 ASP A 250 77.86 -17.18 REMARK 500 3 MSE A 251 -71.20 -31.61 REMARK 500 3 LYS A 253 5.63 -60.75 REMARK 500 3 CYS A 265 20.62 -75.90 REMARK 500 REMARK 500 THIS ENTRY HAS 309 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 16 TYR A 27 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.74073 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2BE4 RELATED DB: PDB REMARK 900 ORIGINAL REFINEMENT BASED ON SAME DATA AND R-FREE SET. DBREF 2Q4U A 2 272 UNP Q5XJX1 Q5XJX1_BRARE 2 272 SEQADV 2Q4U SER A 1 UNP Q5XJX1 EXPRESSION TAG SEQADV 2Q4U MSE A 40 UNP Q5XJX1 MET 40 MODIFIED RESIDUE SEQADV 2Q4U MSE A 63 UNP Q5XJX1 MET 63 MODIFIED RESIDUE SEQADV 2Q4U MSE A 82 UNP Q5XJX1 MET 82 MODIFIED RESIDUE SEQADV 2Q4U MSE A 107 UNP Q5XJX1 MET 107 MODIFIED RESIDUE SEQADV 2Q4U MSE A 153 UNP Q5XJX1 MET 153 MODIFIED RESIDUE SEQADV 2Q4U MSE A 154 UNP Q5XJX1 MET 154 MODIFIED RESIDUE SEQADV 2Q4U MSE A 186 UNP Q5XJX1 MET 186 MODIFIED RESIDUE SEQADV 2Q4U MSE A 225 UNP Q5XJX1 MET 225 MODIFIED RESIDUE SEQADV 2Q4U MSE A 226 UNP Q5XJX1 MET 226 MODIFIED RESIDUE SEQADV 2Q4U MSE A 251 UNP Q5XJX1 MET 251 MODIFIED RESIDUE SEQRES 1 A 272 SER ASP SER ALA PHE ALA ASN LEU ASP ALA ALA GLY PHE SEQRES 2 A 272 LEU GLN ILE TRP GLN HIS PHE ASP ALA ASP ASP ASN GLY SEQRES 3 A 272 TYR ILE GLU GLY LYS GLU LEU ASP ASP PHE PHE ARG HIS SEQRES 4 A 272 MSE LEU LYS LYS LEU GLN PRO LYS ASP LYS ILE THR ASP SEQRES 5 A 272 GLU ARG VAL GLN GLN ILE LYS LYS SER PHE MSE SER ALA SEQRES 6 A 272 TYR ASP ALA THR PHE ASP GLY ARG LEU GLN ILE GLU GLU SEQRES 7 A 272 LEU ALA ASN MSE ILE LEU PRO GLN GLU GLU ASN PHE LEU SEQRES 8 A 272 LEU ILE PHE ARG ARG GLU ALA PRO LEU ASP ASN SER VAL SEQRES 9 A 272 GLU PHE MSE LYS ILE TRP ARG LYS TYR ASP ALA ASP SER SEQRES 10 A 272 SER GLY TYR ILE SER ALA ALA GLU LEU LYS ASN PHE LEU SEQRES 11 A 272 LYS ASP LEU PHE LEU GLN HIS LYS LYS LYS ILE PRO PRO SEQRES 12 A 272 ASN LYS LEU ASP GLU TYR THR ASP ALA MSE MSE LYS ILE SEQRES 13 A 272 PHE ASP LYS ASN LYS ASP GLY ARG LEU ASP LEU ASN ASP SEQRES 14 A 272 LEU ALA ARG ILE LEU ALA LEU GLN GLU ASN PHE LEU LEU SEQRES 15 A 272 GLN PHE LYS MSE ASP ALA SER SER GLN VAL GLU ARG LYS SEQRES 16 A 272 ARG ASP PHE GLU LYS ILE PHE ALA HIS TYR ASP VAL SER SEQRES 17 A 272 ARG THR GLY ALA LEU GLU GLY PRO GLU VAL ASP GLY PHE SEQRES 18 A 272 VAL LYS ASP MSE MSE GLU LEU VAL ARG PRO SER ILE SER SEQRES 19 A 272 GLY GLY ASP LEU ASP LYS PHE ARG GLU CYS LEU LEU THR SEQRES 20 A 272 HIS CYS ASP MSE ASN LYS ASP GLY LYS ILE GLN LYS SER SEQRES 21 A 272 GLU LEU ALA LEU CYS LEU GLY LEU LYS HIS LYS PRO MODRES 2Q4U MSE A 40 MET SELENOMETHIONINE MODRES 2Q4U MSE A 63 MET SELENOMETHIONINE MODRES 2Q4U MSE A 82 MET SELENOMETHIONINE MODRES 2Q4U MSE A 107 MET SELENOMETHIONINE MODRES 2Q4U MSE A 153 MET SELENOMETHIONINE MODRES 2Q4U MSE A 154 MET SELENOMETHIONINE MODRES 2Q4U MSE A 186 MET SELENOMETHIONINE MODRES 2Q4U MSE A 225 MET SELENOMETHIONINE MODRES 2Q4U MSE A 226 MET SELENOMETHIONINE MODRES 2Q4U MSE A 251 MET SELENOMETHIONINE HET MSE A 40 8 HET MSE A 63 8 HET MSE A 82 8 HET MSE A 107 8 HET MSE A 153 8 HET MSE A 154 8 HET MSE A 186 8 HET MSE A 225 8 HET MSE A 226 8 HET MSE A 251 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 HOH *240(H2 O) HELIX 1 1 ASP A 9 ASP A 21 1 13 HELIX 2 2 GLU A 29 LYS A 31 5 3 HELIX 3 3 GLU A 32 GLN A 45 1 14 HELIX 4 4 THR A 51 PHE A 62 1 12 HELIX 5 5 SER A 64 THR A 69 1 6 HELIX 6 6 ILE A 76 LEU A 84 1 9 HELIX 7 7 PRO A 85 ALA A 98 1 14 HELIX 8 8 ASN A 102 ASP A 114 1 13 HELIX 9 9 GLU A 125 HIS A 137 1 13 HELIX 10 10 PRO A 142 ASP A 158 1 17 HELIX 11 11 LEU A 167 ALA A 171 1 5 HELIX 12 12 ARG A 172 LEU A 174 5 3 HELIX 13 13 SER A 189 ASP A 206 1 18 HELIX 14 14 GLY A 215 ARG A 230 1 16 HELIX 15 15 LEU A 238 CYS A 249 1 12 HELIX 16 16 LYS A 259 LEU A 266 1 8 SHEET 1 A 2 TYR A 27 ILE A 28 0 SHEET 2 A 2 LEU A 74 GLN A 75 -1 O LEU A 74 N ILE A 28 SHEET 1 B 2 TYR A 120 SER A 122 0 SHEET 2 B 2 ARG A 164 ASP A 166 -1 O LEU A 165 N ILE A 121 SHEET 1 C 2 ALA A 212 GLU A 214 0 SHEET 2 C 2 LYS A 256 GLN A 258 -1 O ILE A 257 N LEU A 213 LINK C HIS A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N LEU A 41 1555 1555 1.33 LINK C PHE A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N SER A 64 1555 1555 1.32 LINK C ASN A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N ILE A 83 1555 1555 1.34 LINK C PHE A 106 N MSE A 107 1555 1555 1.32 LINK C MSE A 107 N LYS A 108 1555 1555 1.33 LINK C ALA A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N MSE A 154 1555 1555 1.34 LINK C MSE A 154 N LYS A 155 1555 1555 1.33 LINK C LYS A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N ASP A 187 1555 1555 1.33 LINK C ASP A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N GLU A 227 1555 1555 1.33 LINK C ASP A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N ASN A 252 1555 1555 1.34 CRYST1 47.884 52.748 114.364 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020884 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008744 0.00000 MODEL 1