HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAY-07 2Q52 TITLE ENSEMBLE REFINEMENT OF THE CRYSTAL STRUCTURE OF A GLYCOLIPID TRANSFER- TITLE 2 LIKE PROTEIN FROM GALDIERIA SULPHURARIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOLIPID TRANSFER-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALDIERIA SULPHURARIA; SOURCE 3 ORGANISM_TAXID: 130081; SOURCE 4 GENE: C503_101305G25.T1, MSU_GALDI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL834 P(RARE2); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVP16 KEYWDS ENSEMBLE REFINEMENT, REFINEMENT METHODOLOGY DEVELOPMENT, GLTP KEYWDS 2 SUPERFAMILY, GLTP-LIKE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, KEYWDS 4 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION NUMMDL 8 AUTHOR E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 30-AUG-23 2Q52 1 REMARK REVDAT 4 10-AUG-11 2Q52 1 REMARK REVDAT 3 24-FEB-09 2Q52 1 VERSN REVDAT 2 02-OCT-07 2Q52 1 JRNL REVDAT 1 19-JUN-07 2Q52 0 JRNL AUTH E.J.LEVIN,D.A.KONDRASHOV,G.E.WESENBERG,G.N.PHILLIPS JRNL TITL ENSEMBLE REFINEMENT OF PROTEIN CRYSTAL STRUCTURES: JRNL TITL 2 VALIDATION AND APPLICATION. JRNL REF STRUCTURE V. 15 1040 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850744 JRNL DOI 10.1016/J.STR.2007.06.019 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD USING AMPLITUDES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2180669.500 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 93170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4669 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 14062 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 698 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.12 REMARK 3 ESD FROM SIGMAA (A) : -0.0 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.06 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.240 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.740 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.240 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.110 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 40.95 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS PDB ENTRY IS A RE-REFINEMENT USING AN ENSEMBLE MODEL OF THE REMARK 3 PREVIOUSLY REMARK 3 DEPOSITED SINGLE-CONFORMER STRUCTURE 2I3F AND REMARK 3 THE FIRST DATA SET IN THE DEPOSITED STRUCTURE FACTOR FILE REMARK 3 FOR 2I3F ALONG WITH THE R-FREE SET DEFINED THEREIN. THE COORDINATES REMARK 3 WERE GENERATED BY AN AUTOMATED PROTOCOL FROM AN INITIAL MODEL REMARK 3 CONSISTING REMARK 3 OF 8 IDENTICAL COPIES OF THE PROTEIN AND NON-WATER REMARK 3 HETERO-ATOMS ASSIGNED FRACTIONAL OCCUPANCIES ADDING UP TO ONE, AND REMARK 3 A REMARK 3 SINGLE COPY OF THE SOLVENT MOLECULES. REFINEMENT WAS CARRIED OUT REMARK 3 WITH REMARK 3 ALL THE CONFORMERS PRESENT SIMULTANEOUSLY AND WITH THE POTENTIAL REMARK 3 ENERGY REMARK 3 TERMS CORRESPONDING TO INTERACTIONS BETWEEN THE DIFFERENT REMARK 3 CONFORMERS REMARK 3 EXCLUDED. THE HELIX AND SHEET RECORDS WERE CALCULATED USING REMARK 3 COORDINATES REMARK 3 FROM THE FIRST CONFORMER ONLY. THE STRUCTURE VISUALIZATION PROGRAM REMARK 3 PYMOL IS WELL-SUITED FOR DIRECTLY VIEWING THE ENSEMBLE MODEL REMARK 3 PRESENTED IN THIS PDB FILE. REMARK 4 REMARK 4 2Q52 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RE-REFINEMENT USING REMARK 200 ENSEMBLE MODEL REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 2I3F REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 2I3F. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.21900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.09750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.21900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.09750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 241 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 SER A 1 REMARK 465 1 TRP A 2 REMARK 465 1 ASN A 3 REMARK 465 1 LYS A 4 REMARK 465 1 LYS A 5 REMARK 465 1 ASN A 6 REMARK 465 1 GLU A 7 REMARK 465 1 GLU A 8 REMARK 465 1 LYS A 9 REMARK 465 1 GLU A 10 REMARK 465 1 VAL A 217 REMARK 465 1 SER A 218 REMARK 465 1 CYS A 219 REMARK 465 1 GLU A 220 REMARK 465 1 GLN A 221 REMARK 465 1 ASP A 222 REMARK 465 1 SER A 223 REMARK 465 1 VAL A 224 REMARK 465 1 SER B 1 REMARK 465 1 TRP B 2 REMARK 465 1 ASN B 3 REMARK 465 1 LYS B 4 REMARK 465 1 LYS B 5 REMARK 465 1 ASN B 6 REMARK 465 1 GLU B 7 REMARK 465 1 GLU B 8 REMARK 465 1 LYS B 9 REMARK 465 1 GLU B 10 REMARK 465 1 VAL B 217 REMARK 465 1 SER B 218 REMARK 465 1 CYS B 219 REMARK 465 1 GLU B 220 REMARK 465 1 GLN B 221 REMARK 465 1 ASP B 222 REMARK 465 1 SER B 223 REMARK 465 1 VAL B 224 REMARK 465 2 SER A 1 REMARK 465 2 TRP A 2 REMARK 465 2 ASN A 3 REMARK 465 2 LYS A 4 REMARK 465 2 LYS A 5 REMARK 465 2 ASN A 6 REMARK 465 2 GLU A 7 REMARK 465 2 GLU A 8 REMARK 465 2 LYS A 9 REMARK 465 2 GLU A 10 REMARK 465 2 VAL A 217 REMARK 465 2 SER A 218 REMARK 465 2 CYS A 219 REMARK 465 2 GLU A 220 REMARK 465 2 GLN A 221 REMARK 465 2 ASP A 222 REMARK 465 2 SER A 223 REMARK 465 2 VAL A 224 REMARK 465 2 SER B 1 REMARK 465 2 TRP B 2 REMARK 465 2 ASN B 3 REMARK 465 2 LYS B 4 REMARK 465 2 LYS B 5 REMARK 465 2 ASN B 6 REMARK 465 2 GLU B 7 REMARK 465 2 GLU B 8 REMARK 465 2 LYS B 9 REMARK 465 2 GLU B 10 REMARK 465 2 VAL B 217 REMARK 465 2 SER B 218 REMARK 465 2 CYS B 219 REMARK 465 2 GLU B 220 REMARK 465 2 GLN B 221 REMARK 465 2 ASP B 222 REMARK 465 2 SER B 223 REMARK 465 2 VAL B 224 REMARK 465 3 SER A 1 REMARK 465 3 TRP A 2 REMARK 465 3 ASN A 3 REMARK 465 3 LYS A 4 REMARK 465 3 LYS A 5 REMARK 465 3 ASN A 6 REMARK 465 3 GLU A 7 REMARK 465 3 GLU A 8 REMARK 465 3 LYS A 9 REMARK 465 3 GLU A 10 REMARK 465 3 VAL A 217 REMARK 465 3 SER A 218 REMARK 465 3 CYS A 219 REMARK 465 3 GLU A 220 REMARK 465 3 GLN A 221 REMARK 465 3 ASP A 222 REMARK 465 3 SER A 223 REMARK 465 3 VAL A 224 REMARK 465 3 SER B 1 REMARK 465 3 TRP B 2 REMARK 465 3 ASN B 3 REMARK 465 3 LYS B 4 REMARK 465 3 LYS B 5 REMARK 465 3 ASN B 6 REMARK 465 3 GLU B 7 REMARK 465 3 GLU B 8 REMARK 465 3 LYS B 9 REMARK 465 3 GLU B 10 REMARK 465 3 VAL B 217 REMARK 465 3 SER B 218 REMARK 465 3 CYS B 219 REMARK 465 3 GLU B 220 REMARK 465 3 GLN B 221 REMARK 465 3 ASP B 222 REMARK 465 3 SER B 223 REMARK 465 3 VAL B 224 REMARK 465 4 SER A 1 REMARK 465 4 TRP A 2 REMARK 465 4 ASN A 3 REMARK 465 4 LYS A 4 REMARK 465 4 LYS A 5 REMARK 465 4 ASN A 6 REMARK 465 4 GLU A 7 REMARK 465 4 GLU A 8 REMARK 465 4 LYS A 9 REMARK 465 4 GLU A 10 REMARK 465 4 VAL A 217 REMARK 465 4 SER A 218 REMARK 465 4 CYS A 219 REMARK 465 4 GLU A 220 REMARK 465 4 GLN A 221 REMARK 465 4 ASP A 222 REMARK 465 4 SER A 223 REMARK 465 4 VAL A 224 REMARK 465 4 SER B 1 REMARK 465 4 TRP B 2 REMARK 465 4 ASN B 3 REMARK 465 4 LYS B 4 REMARK 465 4 LYS B 5 REMARK 465 4 ASN B 6 REMARK 465 4 GLU B 7 REMARK 465 4 GLU B 8 REMARK 465 4 LYS B 9 REMARK 465 4 GLU B 10 REMARK 465 4 VAL B 217 REMARK 465 4 SER B 218 REMARK 465 4 CYS B 219 REMARK 465 4 GLU B 220 REMARK 465 4 GLN B 221 REMARK 465 4 ASP B 222 REMARK 465 4 SER B 223 REMARK 465 4 VAL B 224 REMARK 465 5 SER A 1 REMARK 465 5 TRP A 2 REMARK 465 5 ASN A 3 REMARK 465 5 LYS A 4 REMARK 465 5 LYS A 5 REMARK 465 5 ASN A 6 REMARK 465 5 GLU A 7 REMARK 465 5 GLU A 8 REMARK 465 5 LYS A 9 REMARK 465 5 GLU A 10 REMARK 465 5 VAL A 217 REMARK 465 5 SER A 218 REMARK 465 5 CYS A 219 REMARK 465 5 GLU A 220 REMARK 465 5 GLN A 221 REMARK 465 5 ASP A 222 REMARK 465 5 SER A 223 REMARK 465 5 VAL A 224 REMARK 465 5 SER B 1 REMARK 465 5 TRP B 2 REMARK 465 5 ASN B 3 REMARK 465 5 LYS B 4 REMARK 465 5 LYS B 5 REMARK 465 5 ASN B 6 REMARK 465 5 GLU B 7 REMARK 465 5 GLU B 8 REMARK 465 5 LYS B 9 REMARK 465 5 GLU B 10 REMARK 465 5 VAL B 217 REMARK 465 5 SER B 218 REMARK 465 5 CYS B 219 REMARK 465 5 GLU B 220 REMARK 465 5 GLN B 221 REMARK 465 5 ASP B 222 REMARK 465 5 SER B 223 REMARK 465 5 VAL B 224 REMARK 465 6 SER A 1 REMARK 465 6 TRP A 2 REMARK 465 6 ASN A 3 REMARK 465 6 LYS A 4 REMARK 465 6 LYS A 5 REMARK 465 6 ASN A 6 REMARK 465 6 GLU A 7 REMARK 465 6 GLU A 8 REMARK 465 6 LYS A 9 REMARK 465 6 GLU A 10 REMARK 465 6 VAL A 217 REMARK 465 6 SER A 218 REMARK 465 6 CYS A 219 REMARK 465 6 GLU A 220 REMARK 465 6 GLN A 221 REMARK 465 6 ASP A 222 REMARK 465 6 SER A 223 REMARK 465 6 VAL A 224 REMARK 465 6 SER B 1 REMARK 465 6 TRP B 2 REMARK 465 6 ASN B 3 REMARK 465 6 LYS B 4 REMARK 465 6 LYS B 5 REMARK 465 6 ASN B 6 REMARK 465 6 GLU B 7 REMARK 465 6 GLU B 8 REMARK 465 6 LYS B 9 REMARK 465 6 GLU B 10 REMARK 465 6 VAL B 217 REMARK 465 6 SER B 218 REMARK 465 6 CYS B 219 REMARK 465 6 GLU B 220 REMARK 465 6 GLN B 221 REMARK 465 6 ASP B 222 REMARK 465 6 SER B 223 REMARK 465 6 VAL B 224 REMARK 465 7 SER A 1 REMARK 465 7 TRP A 2 REMARK 465 7 ASN A 3 REMARK 465 7 LYS A 4 REMARK 465 7 LYS A 5 REMARK 465 7 ASN A 6 REMARK 465 7 GLU A 7 REMARK 465 7 GLU A 8 REMARK 465 7 LYS A 9 REMARK 465 7 GLU A 10 REMARK 465 7 VAL A 217 REMARK 465 7 SER A 218 REMARK 465 7 CYS A 219 REMARK 465 7 GLU A 220 REMARK 465 7 GLN A 221 REMARK 465 7 ASP A 222 REMARK 465 7 SER A 223 REMARK 465 7 VAL A 224 REMARK 465 7 SER B 1 REMARK 465 7 TRP B 2 REMARK 465 7 ASN B 3 REMARK 465 7 LYS B 4 REMARK 465 7 LYS B 5 REMARK 465 7 ASN B 6 REMARK 465 7 GLU B 7 REMARK 465 7 GLU B 8 REMARK 465 7 LYS B 9 REMARK 465 7 GLU B 10 REMARK 465 7 VAL B 217 REMARK 465 7 SER B 218 REMARK 465 7 CYS B 219 REMARK 465 7 GLU B 220 REMARK 465 7 GLN B 221 REMARK 465 7 ASP B 222 REMARK 465 7 SER B 223 REMARK 465 7 VAL B 224 REMARK 465 8 SER A 1 REMARK 465 8 TRP A 2 REMARK 465 8 ASN A 3 REMARK 465 8 LYS A 4 REMARK 465 8 LYS A 5 REMARK 465 8 ASN A 6 REMARK 465 8 GLU A 7 REMARK 465 8 GLU A 8 REMARK 465 8 LYS A 9 REMARK 465 8 GLU A 10 REMARK 465 8 VAL A 217 REMARK 465 8 SER A 218 REMARK 465 8 CYS A 219 REMARK 465 8 GLU A 220 REMARK 465 8 GLN A 221 REMARK 465 8 ASP A 222 REMARK 465 8 SER A 223 REMARK 465 8 VAL A 224 REMARK 465 8 SER B 1 REMARK 465 8 TRP B 2 REMARK 465 8 ASN B 3 REMARK 465 8 LYS B 4 REMARK 465 8 LYS B 5 REMARK 465 8 ASN B 6 REMARK 465 8 GLU B 7 REMARK 465 8 GLU B 8 REMARK 465 8 LYS B 9 REMARK 465 8 GLU B 10 REMARK 465 8 VAL B 217 REMARK 465 8 SER B 218 REMARK 465 8 CYS B 219 REMARK 465 8 GLU B 220 REMARK 465 8 GLN B 221 REMARK 465 8 ASP B 222 REMARK 465 8 SER B 223 REMARK 465 8 VAL B 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 CYS A 124 CB CYS A 124 SG -0.110 REMARK 500 3 CYS B 124 CB CYS B 124 SG -0.105 REMARK 500 5 CYS B 200 CB CYS B 200 SG 0.172 REMARK 500 7 CYS A 185 CB CYS A 185 SG 0.106 REMARK 500 8 CYS B 124 CB CYS B 124 SG -0.146 REMARK 500 8 CYS B 131 CB CYS B 131 SG -0.143 REMARK 500 8 CYS B 186 CB CYS B 186 SG -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 ARG B 155 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 4 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 4 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 4 LYS B 101 CD - CE - NZ ANGL. DEV. = 14.3 DEGREES REMARK 500 5 ARG A 102 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 5 CYS A 136 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 5 VAL A 188 CG1 - CB - CG2 ANGL. DEV. = -9.8 DEGREES REMARK 500 5 ARG B 112 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 5 CYS B 200 CA - CB - SG ANGL. DEV. = 17.6 DEGREES REMARK 500 6 PRO A 135 C - N - CA ANGL. DEV. = -9.8 DEGREES REMARK 500 6 CYS B 200 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 7 CYS B 185 CA - CB - SG ANGL. DEV. = -11.1 DEGREES REMARK 500 7 CYS B 200 CA - CB - SG ANGL. DEV. = -11.0 DEGREES REMARK 500 8 TRP B 201 CA - CB - CG ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 72 -87.62 -162.64 REMARK 500 1 THR A 132 -87.71 -127.19 REMARK 500 1 ASN B 87 66.40 38.29 REMARK 500 1 SER B 88 126.45 -171.02 REMARK 500 1 THR B 132 -89.25 -132.63 REMARK 500 1 ASP B 198 29.55 -159.67 REMARK 500 1 CYS B 200 116.61 168.79 REMARK 500 1 ARG B 208 -171.93 -61.43 REMARK 500 2 LYS A 25 -157.27 -72.91 REMARK 500 2 LEU A 114 -70.04 -53.34 REMARK 500 2 THR A 132 -101.17 -123.45 REMARK 500 2 GLN A 193 -57.03 -123.74 REMARK 500 2 ARG A 194 1.25 -67.34 REMARK 500 2 GLN A 199 -47.27 -138.50 REMARK 500 2 PHE B 53 24.74 42.61 REMARK 500 2 THR B 132 -89.65 -125.11 REMARK 500 2 GLN B 199 -39.67 -130.34 REMARK 500 3 ASN A 87 50.33 38.32 REMARK 500 3 THR A 132 -84.12 -116.46 REMARK 500 3 GLN A 199 -52.64 -120.82 REMARK 500 3 GLU B 26 -79.65 -52.19 REMARK 500 3 PHE B 53 16.80 54.02 REMARK 500 3 ASN B 87 53.95 36.88 REMARK 500 3 THR B 132 -84.71 -153.39 REMARK 500 3 PRO B 153 -178.34 -63.54 REMARK 500 3 ASP B 198 32.17 -143.14 REMARK 500 3 GLN B 199 -59.00 -129.21 REMARK 500 3 SER B 212 77.76 -109.99 REMARK 500 4 ASP A 27 -93.73 -73.56 REMARK 500 4 ASN A 87 75.28 40.99 REMARK 500 4 SER A 88 130.90 -176.56 REMARK 500 4 LEU A 92 -79.20 -62.48 REMARK 500 4 THR A 132 -89.09 -125.67 REMARK 500 4 GLN A 199 -47.74 -155.68 REMARK 500 4 ASN B 87 56.15 38.96 REMARK 500 4 THR B 132 -87.58 -128.27 REMARK 500 4 PRO B 135 -8.01 -59.24 REMARK 500 4 GLN B 199 -38.81 -144.89 REMARK 500 5 THR A 132 -84.13 -129.89 REMARK 500 5 GLU A 197 118.03 -161.37 REMARK 500 5 GLN A 199 -42.13 -135.13 REMARK 500 5 ASN B 87 75.10 35.92 REMARK 500 5 SER B 88 128.87 -179.42 REMARK 500 5 THR B 132 -92.91 -125.13 REMARK 500 5 ASP B 198 24.71 -141.15 REMARK 500 5 GLN B 199 -58.92 -131.07 REMARK 500 6 ILE A 60 -68.83 -91.17 REMARK 500 6 THR A 132 -82.94 -129.34 REMARK 500 6 ARG A 208 175.41 -58.01 REMARK 500 6 ASN B 87 58.88 30.33 REMARK 500 REMARK 500 THIS ENTRY HAS 77 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 129 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.80017 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2I3F RELATED DB: PDB REMARK 900 ORIGINAL REFINEMENT BASED ON SAME DATA AND R-FREE SET. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT REMARK 999 THE UNIPROT DATABASE AT THE TIME OF DEPOSITION. DBREF 2Q52 A 1 224 PDB 2Q52 2Q52 1 224 DBREF 2Q52 B 1 224 PDB 2Q52 2Q52 1 224 SEQRES 1 A 224 SER TRP ASN LYS LYS ASN GLU GLU LYS GLU ASP PHE GLY SEQRES 2 A 224 ILE ILE VAL ILE LEU TRP LYS GLN VAL THR VAL LYS GLU SEQRES 3 A 224 ASP GLY LYS VAL PRO LEU GLU PRO PHE LEU THR ALA ALA SEQRES 4 A 224 LYS GLU VAL LEU ARG VAL VAL ASP ALA PHE GLY SER GLY SEQRES 5 A 224 PHE ARG ILE VAL LYS ASN ASP ILE ALA GLY ASN ILE LYS SEQRES 6 A 224 LYS LEU TYR ARG ALA ASN GLN THR VAL HIS ALA GLU THR SEQRES 7 A 224 LEU GLN GLU LEU ILE ILE ALA GLU ASN SER PRO ASP GLY SEQRES 8 A 224 LEU ALA THR VAL ALA LEU LEU TRP LEU LYS ARG ALA PHE SEQRES 9 A 224 GLN PHE ILE ALA SER PHE LEU ARG ARG LEU VAL VAL THR SEQRES 10 A 224 ASP LYS SER LEU GLU GLN CYS VAL THR GLU ALA TYR ASN SEQRES 11 A 224 CYS THR LEU ARG PRO CYS HIS SER ALA VAL ILE GLN LYS SEQRES 12 A 224 VAL PHE TRP GLY GLY VAL LYS LEU ALA PRO SER ARG GLU SEQRES 13 A 224 ARG PHE TYR ARG LYS LEU HIS PRO ASP LEU ASN ILE ALA SEQRES 14 A 224 LYS ALA LYS ILE GLU GLU PHE LEU ILE GLU LEU HIS ASP SEQRES 15 A 224 PRO LEU CYS CYS ILE VAL GLN PHE PHE PHE GLN ARG GLU SEQRES 16 A 224 LEU GLU ASP GLN CYS TRP GLY ASP GLU VAL TYR GLN ARG SEQRES 17 A 224 LYS ASP SER SER GLU TRP LEU LYS VAL SER CYS GLU GLN SEQRES 18 A 224 ASP SER VAL SEQRES 1 B 224 SER TRP ASN LYS LYS ASN GLU GLU LYS GLU ASP PHE GLY SEQRES 2 B 224 ILE ILE VAL ILE LEU TRP LYS GLN VAL THR VAL LYS GLU SEQRES 3 B 224 ASP GLY LYS VAL PRO LEU GLU PRO PHE LEU THR ALA ALA SEQRES 4 B 224 LYS GLU VAL LEU ARG VAL VAL ASP ALA PHE GLY SER GLY SEQRES 5 B 224 PHE ARG ILE VAL LYS ASN ASP ILE ALA GLY ASN ILE LYS SEQRES 6 B 224 LYS LEU TYR ARG ALA ASN GLN THR VAL HIS ALA GLU THR SEQRES 7 B 224 LEU GLN GLU LEU ILE ILE ALA GLU ASN SER PRO ASP GLY SEQRES 8 B 224 LEU ALA THR VAL ALA LEU LEU TRP LEU LYS ARG ALA PHE SEQRES 9 B 224 GLN PHE ILE ALA SER PHE LEU ARG ARG LEU VAL VAL THR SEQRES 10 B 224 ASP LYS SER LEU GLU GLN CYS VAL THR GLU ALA TYR ASN SEQRES 11 B 224 CYS THR LEU ARG PRO CYS HIS SER ALA VAL ILE GLN LYS SEQRES 12 B 224 VAL PHE TRP GLY GLY VAL LYS LEU ALA PRO SER ARG GLU SEQRES 13 B 224 ARG PHE TYR ARG LYS LEU HIS PRO ASP LEU ASN ILE ALA SEQRES 14 B 224 LYS ALA LYS ILE GLU GLU PHE LEU ILE GLU LEU HIS ASP SEQRES 15 B 224 PRO LEU CYS CYS ILE VAL GLN PHE PHE PHE GLN ARG GLU SEQRES 16 B 224 LEU GLU ASP GLN CYS TRP GLY ASP GLU VAL TYR GLN ARG SEQRES 17 B 224 LYS ASP SER SER GLU TRP LEU LYS VAL SER CYS GLU GLN SEQRES 18 B 224 ASP SER VAL FORMUL 3 HOH *384(H2 O) HELIX 1 1 GLY A 13 GLN A 21 1 9 HELIX 2 2 PRO A 31 VAL A 42 1 12 HELIX 3 3 VAL A 42 GLY A 50 1 9 HELIX 4 4 PHE A 53 ASN A 71 1 19 HELIX 5 5 THR A 78 ASN A 87 1 10 HELIX 6 6 GLY A 91 VAL A 116 1 26 HELIX 7 7 SER A 120 THR A 132 1 13 HELIX 8 8 LEU A 133 HIS A 137 5 5 HELIX 9 9 SER A 138 LYS A 150 1 13 HELIX 10 10 SER A 154 HIS A 163 1 10 HELIX 11 11 ASP A 165 ARG A 194 1 30 HELIX 12 12 SER A 212 LYS A 216 5 5 HELIX 13 13 ASP B 11 PHE B 12 5 2 HELIX 14 14 GLY B 13 GLN B 21 1 9 HELIX 15 15 PRO B 31 ALA B 48 1 18 HELIX 16 16 PHE B 53 HIS B 75 1 23 HELIX 17 17 THR B 78 ASN B 87 1 10 HELIX 18 18 GLY B 91 THR B 117 1 27 HELIX 19 19 SER B 120 CYS B 131 1 12 HELIX 20 20 LEU B 133 HIS B 137 5 5 HELIX 21 21 SER B 138 ALA B 152 1 15 HELIX 22 22 SER B 154 HIS B 163 1 10 HELIX 23 23 ASP B 165 LEU B 180 1 16 HELIX 24 24 HIS B 181 ARG B 194 1 14 HELIX 25 25 SER B 212 LYS B 216 5 5 CRYST1 118.438 48.195 89.411 90.00 115.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008443 0.000000 0.003948 0.00000 SCALE2 0.000000 0.020749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012347 0.00000 MODEL 1