HEADER TRANSFERASE 03-JUN-07 2Q5W TITLE THE X-RAY CRYSTAL STRUCTURE OF MOLYBDOPTERIN SYNTHASE FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN-CONVERTING FACTOR SUBUNIT 2; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: MPT SYNTHASE SUBUNIT 2, MOLYBDOPTERIN SYNTHASE SUBUNIT 2, COMPND 5 MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN E, MOLYBDOPTERIN-CONVERTING COMPND 6 FACTOR LARGE SUBUNIT; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 1; COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: MOAE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 12 ORGANISM_TAXID: 1280; SOURCE 13 GENE: MOAD; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS MOLYBDOPTERIN, MOCO, MPT SYNTHASE, MOAD, MOAE, TRANSFERASE, KEYWDS 2 MOLYBDENUM COFACTOR BIOSYNTHESIS, BETA-GRASP (UBIQUITIN-LIKE), ALPHA KEYWDS 3 BETA HAMMERHEAD FOLD EXPDTA X-RAY DIFFRACTION AUTHOR J.N.DANIELS,H.SCHINDELIN REVDAT 5 30-AUG-23 2Q5W 1 REMARK SEQADV REVDAT 4 18-OCT-17 2Q5W 1 REMARK REVDAT 3 13-JUL-11 2Q5W 1 VERSN REVDAT 2 24-FEB-09 2Q5W 1 VERSN REVDAT 1 19-FEB-08 2Q5W 0 JRNL AUTH J.N.DANIELS,M.M.WUEBBENS,K.V.RAJAGOPALAN,H.SCHINDELIN JRNL TITL CRYSTAL STRUCTURE OF A MOLYBDOPTERIN SYNTHASE-PRECURSOR Z JRNL TITL 2 COMPLEX: INSIGHT INTO ITS SULFUR TRANSFER MECHANISM AND ITS JRNL TITL 3 ROLE IN MOLYBDENUM COFACTOR DEFICIENCY. JRNL REF BIOCHEMISTRY V. 47 615 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18092812 JRNL DOI 10.1021/BI701734G REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 15548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 824 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 821 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1540 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1761 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.02000 REMARK 3 B22 (A**2) : 2.02000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1807 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1634 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2447 ; 1.551 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3823 ; 0.830 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 6.771 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;37.473 ;25.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;13.586 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;22.417 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 266 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1972 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 346 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 304 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1624 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 883 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1045 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.262 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.275 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1395 ; 1.162 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 432 ; 0.252 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1745 ; 1.308 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 877 ; 2.598 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 702 ; 3.638 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 21 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4400 11.0840 12.2380 REMARK 3 T TENSOR REMARK 3 T11: -0.1253 T22: -0.1408 REMARK 3 T33: -0.0221 T12: 0.0104 REMARK 3 T13: -0.0571 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 5.3867 L22: 7.4351 REMARK 3 L33: 9.6306 L12: 0.8816 REMARK 3 L13: -0.6450 L23: -0.4470 REMARK 3 S TENSOR REMARK 3 S11: 0.0706 S12: 0.3495 S13: 0.3834 REMARK 3 S21: -0.2342 S22: 0.1744 S23: 0.6621 REMARK 3 S31: -0.4000 S32: -0.4506 S33: -0.2450 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 22 D 41 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4930 2.1280 14.7420 REMARK 3 T TENSOR REMARK 3 T11: -0.1349 T22: -0.1425 REMARK 3 T33: 0.1307 T12: 0.0161 REMARK 3 T13: -0.0032 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 3.9554 L22: 4.6134 REMARK 3 L33: 14.5823 L12: 4.0108 REMARK 3 L13: -1.5580 L23: -3.9819 REMARK 3 S TENSOR REMARK 3 S11: 0.1817 S12: 0.2950 S13: 0.5022 REMARK 3 S21: -0.0515 S22: 0.1554 S23: 1.0432 REMARK 3 S31: -0.5568 S32: -0.3690 S33: -0.3371 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 42 D 48 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8390 -1.0090 8.7670 REMARK 3 T TENSOR REMARK 3 T11: -0.0207 T22: -0.0818 REMARK 3 T33: 0.0124 T12: -0.0322 REMARK 3 T13: -0.0276 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 11.4313 L22: 11.3436 REMARK 3 L33: 29.7134 L12: -6.6578 REMARK 3 L13: 7.6580 L23: -1.2642 REMARK 3 S TENSOR REMARK 3 S11: 0.5179 S12: 0.9909 S13: -1.1373 REMARK 3 S21: -0.7955 S22: -0.1550 S23: 0.4948 REMARK 3 S31: 1.3407 S32: 0.4661 S33: -0.3629 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 49 D 55 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1240 3.5090 24.0790 REMARK 3 T TENSOR REMARK 3 T11: -0.0851 T22: -0.1770 REMARK 3 T33: -0.0956 T12: -0.0136 REMARK 3 T13: 0.0035 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 3.7575 L22: 12.5188 REMARK 3 L33: 5.6994 L12: 0.7660 REMARK 3 L13: -3.9456 L23: 1.7861 REMARK 3 S TENSOR REMARK 3 S11: 0.2080 S12: -0.4267 S13: 0.1303 REMARK 3 S21: 0.6953 S22: 0.0785 S23: -0.2448 REMARK 3 S31: 0.0807 S32: 0.3100 S33: -0.2865 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 56 D 77 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0810 2.2550 20.7080 REMARK 3 T TENSOR REMARK 3 T11: -0.1233 T22: -0.1765 REMARK 3 T33: -0.0880 T12: 0.0037 REMARK 3 T13: 0.0039 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.5959 L22: 2.9117 REMARK 3 L33: 3.1691 L12: 3.1979 REMARK 3 L13: -2.0125 L23: -1.4624 REMARK 3 S TENSOR REMARK 3 S11: 0.2066 S12: -0.0778 S13: 0.2339 REMARK 3 S21: 0.2229 S22: 0.0052 S23: 0.3302 REMARK 3 S31: 0.0092 S32: -0.0321 S33: -0.2118 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 37 REMARK 3 ORIGIN FOR THE GROUP (A): 58.8650 12.9620 24.4590 REMARK 3 T TENSOR REMARK 3 T11: -0.1284 T22: -0.1239 REMARK 3 T33: -0.1222 T12: -0.0465 REMARK 3 T13: -0.0057 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 3.1790 L22: 0.5572 REMARK 3 L33: 2.8619 L12: -1.2161 REMARK 3 L13: 1.4702 L23: -0.9078 REMARK 3 S TENSOR REMARK 3 S11: -0.1412 S12: -0.0530 S13: 0.4179 REMARK 3 S21: 0.0998 S22: -0.0055 S23: -0.1485 REMARK 3 S31: -0.4185 S32: 0.1936 S33: 0.1467 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 38 E 77 REMARK 3 ORIGIN FOR THE GROUP (A): 50.6930 6.2520 17.6960 REMARK 3 T TENSOR REMARK 3 T11: -0.1432 T22: -0.1878 REMARK 3 T33: -0.1433 T12: 0.0082 REMARK 3 T13: 0.0011 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.5725 L22: 0.6656 REMARK 3 L33: 1.1175 L12: 0.2546 REMARK 3 L13: -0.5515 L23: 0.7099 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: 0.0428 S13: 0.0112 REMARK 3 S21: -0.0498 S22: -0.0133 S23: 0.0413 REMARK 3 S31: 0.2122 S32: -0.1104 S33: -0.0668 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 78 E 90 REMARK 3 ORIGIN FOR THE GROUP (A): 53.0760 14.0600 13.0520 REMARK 3 T TENSOR REMARK 3 T11: -0.1567 T22: -0.0916 REMARK 3 T33: -0.1486 T12: 0.0061 REMARK 3 T13: 0.0177 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.2076 L22: 0.7284 REMARK 3 L33: 0.3381 L12: -0.0040 REMARK 3 L13: -0.4963 L23: 0.3142 REMARK 3 S TENSOR REMARK 3 S11: 0.1089 S12: 0.2699 S13: 0.1290 REMARK 3 S21: -0.1212 S22: 0.0247 S23: 0.1162 REMARK 3 S31: -0.1710 S32: -0.0272 S33: -0.1336 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 91 E 103 REMARK 3 ORIGIN FOR THE GROUP (A): 63.0000 5.0930 25.4960 REMARK 3 T TENSOR REMARK 3 T11: -0.1840 T22: -0.1338 REMARK 3 T33: -0.1734 T12: -0.0003 REMARK 3 T13: 0.0289 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 3.8968 L22: 3.7705 REMARK 3 L33: 13.0018 L12: -1.8323 REMARK 3 L13: 5.5464 L23: -4.0641 REMARK 3 S TENSOR REMARK 3 S11: 0.1447 S12: 0.0210 S13: -0.1792 REMARK 3 S21: 0.0750 S22: -0.2054 S23: -0.1714 REMARK 3 S31: 0.3672 S32: 0.2714 S33: 0.0606 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 104 E 131 REMARK 3 ORIGIN FOR THE GROUP (A): 51.5780 3.3330 14.1990 REMARK 3 T TENSOR REMARK 3 T11: -0.0712 T22: -0.0664 REMARK 3 T33: -0.1374 T12: 0.0534 REMARK 3 T13: 0.0240 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 3.9310 L22: 0.7856 REMARK 3 L33: 2.4758 L12: 0.3352 REMARK 3 L13: 2.3587 L23: -0.0941 REMARK 3 S TENSOR REMARK 3 S11: 0.3455 S12: 0.5295 S13: -0.3321 REMARK 3 S21: -0.2466 S22: -0.2047 S23: 0.1203 REMARK 3 S31: 0.5719 S32: 0.3871 S33: -0.1408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : CHANNEL-CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16442 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.06500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1FM0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M SODIUM FORMATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 5.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.96100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.87700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.96100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.87700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HETEROTETRAMER GENERATED BY REMARK 300 THE TWO FOLD AXIS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 131.47377 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.70019 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN E 138 REMARK 465 LYS E 139 REMARK 465 GLY E 140 REMARK 465 ASN E 141 REMARK 465 TYR E 142 REMARK 465 GLU E 143 REMARK 465 GLU E 144 REMARK 465 ALA E 145 REMARK 465 LYS E 146 REMARK 465 ARG E 147 REMARK 465 GLU E 148 REMARK 465 GLU E 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 302 O HOH D 351 1.83 REMARK 500 O HOH E 179 O HOH E 242 2.00 REMARK 500 O HOH D 310 O HOH D 352 2.13 REMARK 500 O HOH D 313 O HOH D 353 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG E 107 O HOH E 236 2656 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 89 -0.45 71.98 REMARK 500 ALA D 7 -133.71 61.46 REMARK 500 SER D 75 34.19 -148.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NVI RELATED DB: PDB REMARK 900 ORTHORHOMBIC CRYSTAL FORM OF E.COLI MOLYBDOPTERIN SYNTHASE REMARK 900 RELATED ID: 1FM0 RELATED DB: PDB REMARK 900 E.COLI MOLYBDOPTERIN SYNTHASE (MOAD/MOAE)- ACTIVATED REMARK 900 RELATED ID: 1FMA RELATED DB: PDB REMARK 900 E.COLI MOLYBDOPTERIN SYNTHASE (MOAD/MOAE)- COVALENT COMPLEX REMARK 900 RELATED ID: 1NVJ RELATED DB: PDB REMARK 900 DELETION MUTANT (DELTA 141) OF E.COLI MOLYBDOPTERIN SYNTHASE DBREF 2Q5W E 2 149 UNP P65401 MOAE_STAAN 1 148 DBREF 2Q5W D 1 77 UNP Q5HDT7 Q5HDT7_STAAC 1 77 SEQADV 2Q5W HIS E 1 UNP P65401 EXPRESSION TAG SEQRES 1 E 149 HIS MET LYS GLN PHE GLU ILE VAL ILE GLU PRO ILE GLN SEQRES 2 E 149 THR GLU GLN TYR ARG GLU PHE THR ILE ASN GLU TYR GLN SEQRES 3 E 149 GLY ALA VAL VAL VAL PHE THR GLY HIS VAL ARG GLU TRP SEQRES 4 E 149 THR LYS GLY VAL LYS THR GLU TYR LEU GLU TYR GLU ALA SEQRES 5 E 149 TYR ILE PRO MET ALA GLU LYS LYS LEU ALA GLN ILE GLY SEQRES 6 E 149 ASP GLU ILE ASN GLU LYS TRP PRO GLY THR ILE THR SER SEQRES 7 E 149 ILE VAL HIS ARG ILE GLY PRO LEU GLN ILE SER ASP ILE SEQRES 8 E 149 ALA VAL LEU ILE ALA VAL SER SER PRO HIS ARG LYS ASP SEQRES 9 E 149 ALA TYR ARG ALA ASN GLU TYR ALA ILE GLU ARG ILE LYS SEQRES 10 E 149 GLU ILE VAL PRO ILE TRP LYS LYS GLU ILE TRP GLU ASP SEQRES 11 E 149 GLY SER LYS TRP GLN GLY HIS GLN LYS GLY ASN TYR GLU SEQRES 12 E 149 GLU ALA LYS ARG GLU GLU SEQRES 1 D 77 MET LYS VAL LEU TYR PHE ALA GLU ILE LYS ASP ILE LEU SEQRES 2 D 77 GLN LYS ALA GLN GLU ASP ILE VAL LEU GLU GLN ALA LEU SEQRES 3 D 77 THR VAL GLN GLN PHE GLU ASP LEU LEU PHE GLU ARG TYR SEQRES 4 D 77 PRO GLN ILE ASN ASN LYS LYS PHE GLN VAL ALA VAL ASN SEQRES 5 D 77 GLU GLU PHE VAL GLN LYS SER ASP PHE ILE GLN PRO ASN SEQRES 6 D 77 ASP THR VAL ALA LEU ILE PRO PRO VAL SER GLY GLY HET GOL D 300 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *151(H2 O) HELIX 1 1 THR E 14 ILE E 22 1 9 HELIX 2 2 TYR E 53 TRP E 72 1 20 HELIX 3 3 HIS E 101 VAL E 120 1 20 HELIX 4 4 PHE D 6 GLN D 14 1 9 HELIX 5 5 VAL D 28 TYR D 39 1 12 HELIX 6 6 GLN D 41 ASN D 43 5 3 SHEET 1 A 4 PHE E 5 VAL E 8 0 SHEET 2 A 4 ILE E 76 ARG E 82 1 O ILE E 79 N GLU E 6 SHEET 3 A 4 ILE E 91 SER E 99 -1 O ALA E 96 N SER E 78 SHEET 4 A 4 ALA E 28 HIS E 35 -1 N VAL E 30 O VAL E 97 SHEET 1 B 4 GLY E 84 LEU E 86 0 SHEET 2 B 4 THR E 45 ALA E 52 -1 N LEU E 48 O LEU E 86 SHEET 3 B 4 ILE E 122 TRP E 128 -1 O LYS E 125 N GLU E 49 SHEET 4 B 4 GLY E 131 TRP E 134 -1 O GLY E 131 N TRP E 128 SHEET 1 C 5 GLN D 17 ASP D 19 0 SHEET 2 C 5 LYS D 2 LEU D 4 -1 N VAL D 3 O GLU D 18 SHEET 3 C 5 THR D 67 ILE D 71 1 O VAL D 68 N LYS D 2 SHEET 4 C 5 GLN D 48 VAL D 51 -1 N GLN D 48 O ILE D 71 SHEET 5 C 5 GLU D 54 VAL D 56 -1 O GLU D 54 N VAL D 51 SHEET 1 D 2 LEU D 26 THR D 27 0 SHEET 2 D 2 PHE D 61 ILE D 62 -1 O ILE D 62 N LEU D 26 SITE 1 AC1 5 GLY D 77 GLY E 34 HIS E 35 LEU E 48 SITE 2 AC1 5 TYR E 50 CRYST1 133.922 45.754 41.772 90.00 93.36 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007467 0.000000 0.000438 0.00000 SCALE2 0.000000 0.021856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023981 0.00000