HEADER IMMUNE SYSTEM 06-JUN-07 2Q76 TITLE MOUSE ANTI-HEN EGG WHITE LYSOZYME ANTIBODY F10.6.6 FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB F10.6.6 FRAGMENT LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: DOMAIN VL AND CL; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB F10.6.6 FRAGMENT HEAVY CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 FRAGMENT: DOMAIN VH AND CH1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 OTHER_DETAILS: THE ANTIBODY WAS OBTAINED FROM ASCITIC FLUID SOURCE 7 GENERATED BY INJECTING MONOCLONAL HYBRIDOMA CELLS.; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 STRAIN: BALB/C; SOURCE 13 OTHER_DETAILS: THE ANTIBODY WAS OBTAINED FROM ASCITIC FLUID SOURCE 14 GENERATED BY INJECTING MONOCLONAL HYBRIDOMA CELLS. KEYWDS ANTIBODY, FAB FRAGMENT, LYSOZYME, AFFINITY MATURATION, VH-VL KEYWDS 2 INTERFACE., IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.CAUERHFF,S.KLINKE,J.P.ACIERNO,F.A.GOLDBAUM,B.C.BRADEN REVDAT 4 09-OCT-24 2Q76 1 REMARK REVDAT 3 30-AUG-23 2Q76 1 REMARK REVDAT 2 24-FEB-09 2Q76 1 VERSN REVDAT 1 18-MAR-08 2Q76 0 JRNL AUTH J.P.ACIERNO,B.C.BRADEN,S.KLINKE,F.A.GOLDBAUM,A.CAUERHFF JRNL TITL AFFINITY MATURATION INCREASES THE STABILITY AND PLASTICITY JRNL TITL 2 OF THE FV DOMAIN OF ANTI-PROTEIN ANTIBODIES. JRNL REF J.MOL.BIOL. V. 374 130 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17916365 JRNL DOI 10.1016/J.JMB.2007.09.005 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.CAUERHFF,F.A.GOLDBAUM,B.C.BRADEN REMARK 1 TITL STRUCTURAL MECHANISM FOR AFFINITY MATURATION OF AN REMARK 1 TITL 2 ANTI-LYSOZYME ANTIBODY REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 101 3539 2004 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 14988501 REMARK 1 DOI 10.1073/PNAS.0400060101 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 47530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4403 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 517 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.410 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Q76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043234. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.70 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.431 REMARK 200 MONOCHROMATOR : SI SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50300 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.19500 REMARK 200 R SYM FOR SHELL (I) : 0.19500 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: FAB FRAGMENT OF PDB 1P2C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE F10.6.6 FAB FRAGMENT WAS REMARK 280 CRYSTALLIZED IN A MOTHER LIQUOR CONTAINING 24% (W/V) PEG 1000, REMARK 280 0.2 M CACL2 AND 0.1 M ACETATE BUFFER PH 4.7. LARGE PRISMS OF REMARK 280 ABOUT 0.30 MM X 0.05 MM X 0.05 MM WERE OBTAINED AFTER SEVERAL REMARK 280 WEEKS. VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 4.70 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.38000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.38000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 131 REMARK 465 ALA B 132 REMARK 465 ALA B 133 REMARK 465 SER D 131 REMARK 465 ALA D 132 REMARK 465 ALA D 133 REMARK 465 GLN D 134 REMARK 465 THR D 135 REMARK 465 ASN D 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 134 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 261 O HOH D 262 1.96 REMARK 500 O HOH C 259 O HOH C 302 2.05 REMARK 500 OG1 THR C 102 O HOH C 218 2.07 REMARK 500 O HOH A 247 O HOH A 271 2.10 REMARK 500 O HOH A 253 O HOH A 254 2.12 REMARK 500 O HOH B 305 O HOH B 325 2.13 REMARK 500 OD1 ASP A 105 O HOH A 303 2.16 REMARK 500 O HOH C 324 O HOH C 326 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 311 O HOH D 290 4547 1.76 REMARK 500 O HOH A 323 O HOH B 341 4546 2.02 REMARK 500 O HOH A 302 O HOH B 263 4546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 5 CD GLU B 5 OE2 0.077 REMARK 500 GLU D 5 CD GLU D 5 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -127.16 61.22 REMARK 500 THR A 51 -53.12 71.84 REMARK 500 SER A 67 101.34 -174.58 REMARK 500 SER A 77 75.61 66.66 REMARK 500 TYR A 140 138.22 -171.13 REMARK 500 SER A 171 18.61 54.93 REMARK 500 SER A 201 138.29 -172.44 REMARK 500 ARG A 211 88.88 -58.29 REMARK 500 ASP B 56 16.54 56.99 REMARK 500 ALA B 92 179.73 179.28 REMARK 500 ASN B 136 57.17 -163.68 REMARK 500 SER B 137 -44.97 76.25 REMARK 500 SER C 30 -129.19 51.92 REMARK 500 TYR C 50 64.72 37.05 REMARK 500 THR C 51 -55.42 70.03 REMARK 500 SER C 77 69.31 70.56 REMARK 500 ASN C 190 -56.84 -122.95 REMARK 500 ALA D 92 179.11 174.59 REMARK 500 MET D 138 -151.94 -135.04 REMARK 500 SER D 193 -63.92 -25.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P2C RELATED DB: PDB REMARK 900 FAB F10.6.6 COMPLEXED WITH HEL REMARK 900 RELATED ID: 1MLB RELATED DB: PDB REMARK 900 FAB D44.1 REMARK 900 RELATED ID: 1MLC RELATED DB: PDB REMARK 900 FAB D44.1 COMPLEXED WITH HEL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCES FOR FAB F10.6.6 FRAGMENT LIGHT AND REMARK 999 HEAVY CHAINS ARE NOT IN THE UNP DATABASE AT THE REMARK 999 TIME OF PROCESSING. REMARK 999 AUTHOR INDICATED THE SEQUENCE REFERENCES REMARK 999 AF110316.3 GI:32456055 FOR VH, AND AY277254.1 REMARK 999 GI:33642144 FOR VL, RESPECTIVELY. BOTH SEQUENCES REMARK 999 ARE IDENTICAL TO THE SEQUENCES IN THE COORDINATES. DBREF 2Q76 A 1 212 PDB 2Q76 2Q76 1 212 DBREF 2Q76 B 1 216 PDB 2Q76 2Q76 1 216 DBREF 2Q76 C 1 212 PDB 2Q76 2Q76 1 212 DBREF 2Q76 D 1 216 PDB 2Q76 2Q76 1 216 SEQRES 1 A 212 ASP ILE GLU LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 A 212 THR PRO GLY ASP SER VAL SER LEU SER CYS ARG ALA SER SEQRES 3 A 212 GLN SER ILE SER ASN ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 A 212 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR THR SER SEQRES 5 A 212 GLN SER MET SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 A 212 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 A 212 GLU THR GLU ASP PHE GLY VAL TYR PHE CYS GLN GLN SER SEQRES 8 A 212 GLY SER TRP PRO ARG THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 212 ASP ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 A 212 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 A 212 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 A 212 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 A 212 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 A 212 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 A 212 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 A 212 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 A 212 PHE ASN ARG ASN SEQRES 1 B 216 GLU VAL GLN LEU GLU GLN SER GLY ALA GLU LEU MET LYS SEQRES 2 B 216 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA THR GLY SEQRES 3 B 216 TYR THR PHE THR THR TYR TRP ILE GLU TRP ILE LYS GLN SEQRES 4 B 216 ARG PRO GLY HIS SER LEU GLU TRP ILE GLY GLU ILE LEU SEQRES 5 B 216 PRO GLY SER ASP SER THR TYR TYR ASN GLU LYS VAL LYS SEQRES 6 B 216 GLY LYS VAL THR PHE THR ALA ASP ALA SER SER ASN THR SEQRES 7 B 216 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 B 216 ALA VAL TYR TYR CYS ALA ARG GLY ASP GLY PHE TYR VAL SEQRES 9 B 216 TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SER ALA SEQRES 10 B 216 SER THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 B 216 SER ALA ALA GLN THR ASN SER MET VAL THR LEU GLY CYS SEQRES 12 B 216 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR SEQRES 13 B 216 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 B 216 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 B 216 SER VAL THR VAL PRO SER SER PRO TRP PRO SER GLU THR SEQRES 16 B 216 VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 B 216 VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 1 C 212 ASP ILE GLU LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 C 212 THR PRO GLY ASP SER VAL SER LEU SER CYS ARG ALA SER SEQRES 3 C 212 GLN SER ILE SER ASN ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 C 212 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR THR SER SEQRES 5 C 212 GLN SER MET SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 C 212 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 C 212 GLU THR GLU ASP PHE GLY VAL TYR PHE CYS GLN GLN SER SEQRES 8 C 212 GLY SER TRP PRO ARG THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 C 212 ASP ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 C 212 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 C 212 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 C 212 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 C 212 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 C 212 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 C 212 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 C 212 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 C 212 PHE ASN ARG ASN SEQRES 1 D 216 GLU VAL GLN LEU GLU GLN SER GLY ALA GLU LEU MET LYS SEQRES 2 D 216 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA THR GLY SEQRES 3 D 216 TYR THR PHE THR THR TYR TRP ILE GLU TRP ILE LYS GLN SEQRES 4 D 216 ARG PRO GLY HIS SER LEU GLU TRP ILE GLY GLU ILE LEU SEQRES 5 D 216 PRO GLY SER ASP SER THR TYR TYR ASN GLU LYS VAL LYS SEQRES 6 D 216 GLY LYS VAL THR PHE THR ALA ASP ALA SER SER ASN THR SEQRES 7 D 216 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 D 216 ALA VAL TYR TYR CYS ALA ARG GLY ASP GLY PHE TYR VAL SEQRES 9 D 216 TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SER ALA SEQRES 10 D 216 SER THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 D 216 SER ALA ALA GLN THR ASN SER MET VAL THR LEU GLY CYS SEQRES 12 D 216 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR SEQRES 13 D 216 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 D 216 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 D 216 SER VAL THR VAL PRO SER SER PRO TRP PRO SER GLU THR SEQRES 16 D 216 VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 D 216 VAL ASP LYS LYS ILE VAL PRO ARG FORMUL 5 HOH *517(H2 O) HELIX 1 1 GLU A 79 PHE A 83 5 5 HELIX 2 2 SER A 121 SER A 127 1 7 HELIX 3 3 LYS A 183 ARG A 188 1 6 HELIX 4 4 THR B 28 TYR B 32 5 5 HELIX 5 5 THR B 87 SER B 91 5 5 HELIX 6 6 SER B 159 SER B 161 5 3 HELIX 7 7 PRO B 203 SER B 206 5 4 HELIX 8 8 GLU C 79 PHE C 83 5 5 HELIX 9 9 SER C 121 SER C 127 1 7 HELIX 10 10 LYS C 183 ARG C 188 1 6 HELIX 11 11 THR D 28 TYR D 32 5 5 HELIX 12 12 ALA D 74 SER D 76 5 3 HELIX 13 13 THR D 87 SER D 91 5 5 HELIX 14 14 SER D 159 SER D 161 5 3 HELIX 15 15 PRO D 203 SER D 206 5 4 SHEET 1 A 4 LEU A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O LEU A 73 N LEU A 21 SHEET 4 A 4 PHE A 62 GLY A 66 -1 N SER A 65 O THR A 72 SHEET 1 B 6 THR A 10 VAL A 13 0 SHEET 2 B 6 THR A 102 ILE A 106 1 O ASP A 105 N LEU A 11 SHEET 3 B 6 GLY A 84 GLN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N HIS A 34 O GLN A 89 SHEET 5 B 6 ARG A 45 LYS A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 GLN A 53 SER A 54 -1 O GLN A 53 N LYS A 49 SHEET 1 C 4 THR A 10 VAL A 13 0 SHEET 2 C 4 THR A 102 ILE A 106 1 O ASP A 105 N LEU A 11 SHEET 3 C 4 GLY A 84 GLN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 C 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 D 4 THR A 114 PHE A 118 0 SHEET 2 D 4 GLY A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 D 4 TYR A 173 THR A 182 -1 O MET A 175 N LEU A 136 SHEET 4 D 4 VAL A 159 TRP A 163 -1 N LEU A 160 O THR A 178 SHEET 1 E 4 SER A 153 ARG A 155 0 SHEET 2 E 4 ASN A 145 ILE A 150 -1 N ILE A 150 O SER A 153 SHEET 3 E 4 SER A 191 THR A 197 -1 O THR A 197 N ASN A 145 SHEET 4 E 4 ILE A 205 ASN A 210 -1 O ILE A 205 N ALA A 196 SHEET 1 F 4 GLN B 3 GLN B 6 0 SHEET 2 F 4 VAL B 18 THR B 25 -1 O LYS B 23 N GLU B 5 SHEET 3 F 4 THR B 78 LEU B 83 -1 O MET B 81 N ILE B 20 SHEET 4 F 4 VAL B 68 ASP B 73 -1 N ASP B 73 O THR B 78 SHEET 1 G 6 GLU B 10 MET B 12 0 SHEET 2 G 6 THR B 110 VAL B 114 1 O THR B 111 N GLU B 10 SHEET 3 G 6 ALA B 92 ARG B 98 -1 N ALA B 92 O LEU B 112 SHEET 4 G 6 ILE B 34 GLN B 39 -1 N GLU B 35 O ALA B 97 SHEET 5 G 6 LEU B 45 ILE B 51 -1 O GLU B 46 N LYS B 38 SHEET 6 G 6 THR B 58 TYR B 60 -1 O TYR B 59 N GLU B 50 SHEET 1 H 4 SER B 123 LEU B 127 0 SHEET 2 H 4 MET B 138 TYR B 148 -1 O GLY B 142 N LEU B 127 SHEET 3 H 4 LEU B 177 PRO B 187 -1 O LEU B 180 N VAL B 145 SHEET 4 H 4 VAL B 166 THR B 168 -1 N HIS B 167 O SER B 183 SHEET 1 I 4 SER B 123 LEU B 127 0 SHEET 2 I 4 MET B 138 TYR B 148 -1 O GLY B 142 N LEU B 127 SHEET 3 I 4 LEU B 177 PRO B 187 -1 O LEU B 180 N VAL B 145 SHEET 4 I 4 VAL B 172 GLN B 174 -1 N VAL B 172 O THR B 179 SHEET 1 J 3 THR B 154 TRP B 157 0 SHEET 2 J 3 THR B 197 HIS B 202 -1 O ASN B 199 N THR B 156 SHEET 3 J 3 THR B 207 LYS B 212 -1 O VAL B 209 N VAL B 200 SHEET 1 K 4 LEU C 4 SER C 7 0 SHEET 2 K 4 VAL C 19 ALA C 25 -1 O ARG C 24 N THR C 5 SHEET 3 K 4 ASP C 70 ILE C 75 -1 O LEU C 73 N LEU C 21 SHEET 4 K 4 PHE C 62 SER C 67 -1 N SER C 63 O SER C 74 SHEET 1 L 6 THR C 10 VAL C 13 0 SHEET 2 L 6 THR C 102 ILE C 106 1 O ASP C 105 N LEU C 11 SHEET 3 L 6 GLY C 84 GLN C 90 -1 N GLY C 84 O LEU C 104 SHEET 4 L 6 LEU C 33 GLN C 38 -1 N HIS C 34 O GLN C 89 SHEET 5 L 6 ARG C 45 LYS C 49 -1 O LEU C 47 N TRP C 35 SHEET 6 L 6 GLN C 53 SER C 54 -1 O GLN C 53 N LYS C 49 SHEET 1 M 4 THR C 10 VAL C 13 0 SHEET 2 M 4 THR C 102 ILE C 106 1 O ASP C 105 N LEU C 11 SHEET 3 M 4 GLY C 84 GLN C 90 -1 N GLY C 84 O LEU C 104 SHEET 4 M 4 THR C 97 PHE C 98 -1 O THR C 97 N GLN C 90 SHEET 1 N 4 THR C 114 PHE C 118 0 SHEET 2 N 4 GLY C 129 PHE C 139 -1 O ASN C 137 N THR C 114 SHEET 3 N 4 TYR C 173 THR C 182 -1 O LEU C 179 N VAL C 132 SHEET 4 N 4 VAL C 159 TRP C 163 -1 N LEU C 160 O THR C 178 SHEET 1 O 4 SER C 153 ARG C 155 0 SHEET 2 O 4 ASN C 145 ILE C 150 -1 N ILE C 150 O SER C 153 SHEET 3 O 4 SER C 191 THR C 197 -1 O THR C 197 N ASN C 145 SHEET 4 O 4 ILE C 205 ASN C 210 -1 O LYS C 207 N CYS C 194 SHEET 1 P 4 GLN D 3 GLN D 6 0 SHEET 2 P 4 VAL D 18 THR D 25 -1 O LYS D 23 N GLU D 5 SHEET 3 P 4 THR D 78 LEU D 83 -1 O LEU D 83 N VAL D 18 SHEET 4 P 4 VAL D 68 ASP D 73 -1 N ASP D 73 O THR D 78 SHEET 1 Q 6 GLU D 10 MET D 12 0 SHEET 2 Q 6 THR D 110 VAL D 114 1 O THR D 113 N GLU D 10 SHEET 3 Q 6 ALA D 92 ARG D 98 -1 N ALA D 92 O LEU D 112 SHEET 4 Q 6 ILE D 34 GLN D 39 -1 N GLU D 35 O ALA D 97 SHEET 5 Q 6 LEU D 45 LEU D 52 -1 O GLU D 46 N LYS D 38 SHEET 6 Q 6 SER D 57 TYR D 60 -1 O SER D 57 N LEU D 52 SHEET 1 R 4 SER D 123 LEU D 127 0 SHEET 2 R 4 VAL D 139 TYR D 148 -1 O GLY D 142 N LEU D 127 SHEET 3 R 4 LEU D 177 VAL D 186 -1 O LEU D 180 N VAL D 145 SHEET 4 R 4 VAL D 166 THR D 168 -1 N HIS D 167 O SER D 183 SHEET 1 S 4 SER D 123 LEU D 127 0 SHEET 2 S 4 VAL D 139 TYR D 148 -1 O GLY D 142 N LEU D 127 SHEET 3 S 4 LEU D 177 VAL D 186 -1 O LEU D 180 N VAL D 145 SHEET 4 S 4 VAL D 172 GLN D 174 -1 N GLN D 174 O LEU D 177 SHEET 1 T 3 THR D 154 TRP D 157 0 SHEET 2 T 3 THR D 197 HIS D 202 -1 O ASN D 199 N THR D 156 SHEET 3 T 3 THR D 207 LYS D 212 -1 O VAL D 209 N VAL D 200 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.04 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.02 SSBOND 4 CYS B 143 CYS B 198 1555 1555 2.03 SSBOND 5 CYS C 23 CYS C 88 1555 1555 2.04 SSBOND 6 CYS C 134 CYS C 194 1555 1555 2.03 SSBOND 7 CYS D 22 CYS D 96 1555 1555 2.03 SSBOND 8 CYS D 143 CYS D 198 1555 1555 2.03 CISPEP 1 SER A 7 PRO A 8 0 -0.31 CISPEP 2 TRP A 94 PRO A 95 0 0.23 CISPEP 3 TYR A 140 PRO A 141 0 0.10 CISPEP 4 PHE B 149 PRO B 150 0 -0.05 CISPEP 5 GLU B 151 PRO B 152 0 0.02 CISPEP 6 TRP B 191 PRO B 192 0 -0.14 CISPEP 7 SER C 7 PRO C 8 0 -0.23 CISPEP 8 TRP C 94 PRO C 95 0 0.32 CISPEP 9 TYR C 140 PRO C 141 0 0.11 CISPEP 10 PHE D 149 PRO D 150 0 -0.57 CISPEP 11 GLU D 151 PRO D 152 0 -0.06 CISPEP 12 TRP D 191 PRO D 192 0 0.41 CRYST1 108.760 80.250 91.500 90.00 91.50 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009195 0.000000 0.000241 0.00000 SCALE2 0.000000 0.012461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010933 0.00000