HEADER OXIDOREDUCTASE 07-JUN-07 2Q7V TITLE CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS THIOREDOXIN REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 STRAIN: R1; SOURCE 5 GENE: TRXB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET-30B KEYWDS ROSSMANN FOLD, FAD, FLAVOPROTEIN, OXIDOREDUCTASE, REDOX-ACTIVE CENTER EXPDTA X-RAY DIFFRACTION AUTHOR D.A.R.SANDERS,J.OBIERO,S.A.BONDEROFF,M.M.GOERTZEN REVDAT 6 30-AUG-23 2Q7V 1 REMARK REVDAT 5 12-NOV-14 2Q7V 1 KEYWDS REVDAT 4 26-JAN-10 2Q7V 1 JRNL REVDAT 3 12-JAN-10 2Q7V 1 REMARK REVDAT 2 24-FEB-09 2Q7V 1 VERSN REVDAT 1 08-JUL-08 2Q7V 0 JRNL AUTH J.OBIERO,V.PITTET,S.A.BONDEROFF,D.A.SANDERS JRNL TITL THIOREDOXIN SYSTEM FROM DEINOCOCCUS RADIODURANS. JRNL REF J.BACTERIOL. V. 192 494 2010 JRNL REFN ISSN 0021-9193 JRNL PMID 19933368 JRNL DOI 10.1128/JB.01046-09 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 46481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2476 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3272 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4728 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4934 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6704 ; 1.715 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 617 ; 9.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 217 ;34.813 ;24.055 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 774 ;16.433 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;21.509 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 731 ; 0.168 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3756 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2297 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3316 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 468 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.210 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3150 ; 1.027 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4881 ; 1.553 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2181 ; 2.614 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1823 ; 4.108 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 8-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49077 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 80.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.02800 REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : 0.33200 REMARK 200 FOR SHELL : 21.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP (MOLREP) REMARK 200 STARTING MODEL: PDB ENTRY 2A87 CHAIN B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 4000, 0.2M AMMONIUM ACETATE, REMARK 280 CITRIC ACID BUFFER, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K, PH 5.10 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.74000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.37000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.37000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 453 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 528 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 600 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 315 REMARK 465 VAL A 316 REMARK 465 GLU A 317 REMARK 465 GLY A 318 REMARK 465 GLU A 319 REMARK 465 GLU A 320 REMARK 465 VAL A 321 REMARK 465 THR A 322 REMARK 465 ALA A 323 REMARK 465 ALA A 324 REMARK 465 ASP A 325 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 4 REMARK 465 THR B 5 REMARK 465 GLU B 315 REMARK 465 VAL B 316 REMARK 465 GLU B 317 REMARK 465 GLY B 318 REMARK 465 GLU B 319 REMARK 465 GLU B 320 REMARK 465 VAL B 321 REMARK 465 THR B 322 REMARK 465 ALA B 323 REMARK 465 ALA B 324 REMARK 465 ASP B 325 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LYS B 229 REMARK 475 THR B 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 291 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 291 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 118 54.30 -144.31 REMARK 500 PHE A 174 -54.14 -128.66 REMARK 500 ALA A 217 -75.07 -116.41 REMARK 500 GLU A 271 -23.70 72.59 REMARK 500 ASN B 107 -24.15 -141.49 REMARK 500 ALA B 217 -83.93 -106.64 REMARK 500 LEU B 228 38.06 -91.27 REMARK 500 LYS B 229 -23.42 -151.77 REMARK 500 GLU B 271 -41.00 75.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 348 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 448 DBREF 2Q7V A 1 325 UNP Q9RSY7 Q9RSY7_DEIRA 1 325 DBREF 2Q7V B 1 325 UNP Q9RSY7 Q9RSY7_DEIRA 1 325 SEQRES 1 A 325 MET THR ALA PRO THR ALA HIS ASP TYR ASP VAL VAL ILE SEQRES 2 A 325 ILE GLY GLY GLY PRO ALA GLY LEU THR ALA ALA ILE TYR SEQRES 3 A 325 THR GLY ARG ALA GLN LEU SER THR LEU ILE LEU GLU LYS SEQRES 4 A 325 GLY MET PRO GLY GLY GLN ILE ALA TRP SER GLU GLU VAL SEQRES 5 A 325 GLU ASN PHE PRO GLY PHE PRO GLU PRO ILE ALA GLY MET SEQRES 6 A 325 GLU LEU ALA GLN ARG MET HIS GLN GLN ALA GLU LYS PHE SEQRES 7 A 325 GLY ALA LYS VAL GLU MET ASP GLU VAL GLN GLY VAL GLN SEQRES 8 A 325 HIS ASP ALA THR SER HIS PRO TYR PRO PHE THR VAL ARG SEQRES 9 A 325 GLY TYR ASN GLY GLU TYR ARG ALA LYS ALA VAL ILE LEU SEQRES 10 A 325 ALA THR GLY ALA ASP PRO ARG LYS LEU GLY ILE PRO GLY SEQRES 11 A 325 GLU ASP ASN PHE TRP GLY LYS GLY VAL SER THR CYS ALA SEQRES 12 A 325 THR CYS ASP GLY PHE PHE TYR LYS GLY LYS LYS VAL VAL SEQRES 13 A 325 VAL ILE GLY GLY GLY ASP ALA ALA VAL GLU GLU GLY MET SEQRES 14 A 325 PHE LEU THR LYS PHE ALA ASP GLU VAL THR VAL ILE HIS SEQRES 15 A 325 ARG ARG ASP THR LEU ARG ALA ASN LYS VAL ALA GLN ALA SEQRES 16 A 325 ARG ALA PHE ALA ASN PRO LYS MET LYS PHE ILE TRP ASP SEQRES 17 A 325 THR ALA VAL GLU GLU ILE GLN GLY ALA ASP SER VAL SER SEQRES 18 A 325 GLY VAL LYS LEU ARG ASN LEU LYS THR GLY GLU VAL SER SEQRES 19 A 325 GLU LEU ALA THR ASP GLY VAL PHE ILE PHE ILE GLY HIS SEQRES 20 A 325 VAL PRO ASN THR ALA PHE VAL LYS ASP THR VAL SER LEU SEQRES 21 A 325 ARG ASP ASP GLY TYR VAL ASP VAL ARG ASP GLU ILE TYR SEQRES 22 A 325 THR ASN ILE PRO MET LEU PHE ALA ALA GLY ASP VAL SER SEQRES 23 A 325 ASP TYR ILE TYR ARG GLN LEU ALA THR SER VAL GLY ALA SEQRES 24 A 325 GLY THR ARG ALA ALA MET MET THR GLU ARG GLN LEU ALA SEQRES 25 A 325 ALA LEU GLU VAL GLU GLY GLU GLU VAL THR ALA ALA ASP SEQRES 1 B 325 MET THR ALA PRO THR ALA HIS ASP TYR ASP VAL VAL ILE SEQRES 2 B 325 ILE GLY GLY GLY PRO ALA GLY LEU THR ALA ALA ILE TYR SEQRES 3 B 325 THR GLY ARG ALA GLN LEU SER THR LEU ILE LEU GLU LYS SEQRES 4 B 325 GLY MET PRO GLY GLY GLN ILE ALA TRP SER GLU GLU VAL SEQRES 5 B 325 GLU ASN PHE PRO GLY PHE PRO GLU PRO ILE ALA GLY MET SEQRES 6 B 325 GLU LEU ALA GLN ARG MET HIS GLN GLN ALA GLU LYS PHE SEQRES 7 B 325 GLY ALA LYS VAL GLU MET ASP GLU VAL GLN GLY VAL GLN SEQRES 8 B 325 HIS ASP ALA THR SER HIS PRO TYR PRO PHE THR VAL ARG SEQRES 9 B 325 GLY TYR ASN GLY GLU TYR ARG ALA LYS ALA VAL ILE LEU SEQRES 10 B 325 ALA THR GLY ALA ASP PRO ARG LYS LEU GLY ILE PRO GLY SEQRES 11 B 325 GLU ASP ASN PHE TRP GLY LYS GLY VAL SER THR CYS ALA SEQRES 12 B 325 THR CYS ASP GLY PHE PHE TYR LYS GLY LYS LYS VAL VAL SEQRES 13 B 325 VAL ILE GLY GLY GLY ASP ALA ALA VAL GLU GLU GLY MET SEQRES 14 B 325 PHE LEU THR LYS PHE ALA ASP GLU VAL THR VAL ILE HIS SEQRES 15 B 325 ARG ARG ASP THR LEU ARG ALA ASN LYS VAL ALA GLN ALA SEQRES 16 B 325 ARG ALA PHE ALA ASN PRO LYS MET LYS PHE ILE TRP ASP SEQRES 17 B 325 THR ALA VAL GLU GLU ILE GLN GLY ALA ASP SER VAL SER SEQRES 18 B 325 GLY VAL LYS LEU ARG ASN LEU LYS THR GLY GLU VAL SER SEQRES 19 B 325 GLU LEU ALA THR ASP GLY VAL PHE ILE PHE ILE GLY HIS SEQRES 20 B 325 VAL PRO ASN THR ALA PHE VAL LYS ASP THR VAL SER LEU SEQRES 21 B 325 ARG ASP ASP GLY TYR VAL ASP VAL ARG ASP GLU ILE TYR SEQRES 22 B 325 THR ASN ILE PRO MET LEU PHE ALA ALA GLY ASP VAL SER SEQRES 23 B 325 ASP TYR ILE TYR ARG GLN LEU ALA THR SER VAL GLY ALA SEQRES 24 B 325 GLY THR ARG ALA ALA MET MET THR GLU ARG GLN LEU ALA SEQRES 25 B 325 ALA LEU GLU VAL GLU GLY GLU GLU VAL THR ALA ALA ASP HET FAD A 348 53 HET FAD B 448 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *521(H2 O) HELIX 1 1 GLY A 17 ALA A 30 1 14 HELIX 2 2 GLY A 43 SER A 49 5 7 HELIX 3 3 ALA A 63 PHE A 78 1 16 HELIX 4 4 CYS A 142 GLY A 147 1 6 HELIX 5 5 PHE A 148 LYS A 151 5 4 HELIX 6 6 GLY A 161 THR A 172 1 12 HELIX 7 7 ASN A 190 ALA A 199 1 10 HELIX 8 8 THR A 251 LYS A 255 5 5 HELIX 9 9 GLN A 292 LEU A 314 1 23 HELIX 10 10 GLY B 17 ALA B 30 1 14 HELIX 11 11 GLY B 43 SER B 49 5 7 HELIX 12 12 ALA B 63 PHE B 78 1 16 HELIX 13 13 CYS B 142 GLY B 147 1 6 HELIX 14 14 PHE B 148 LYS B 151 5 4 HELIX 15 15 GLY B 161 THR B 172 1 12 HELIX 16 16 ASN B 190 ASN B 200 1 11 HELIX 17 17 THR B 251 LYS B 255 5 5 HELIX 18 18 GLN B 292 LEU B 314 1 23 SHEET 1 A 6 LYS A 81 MET A 84 0 SHEET 2 A 6 THR A 34 GLU A 38 1 N ILE A 36 O LYS A 81 SHEET 3 A 6 HIS A 7 ILE A 14 1 N ILE A 13 O LEU A 35 SHEET 4 A 6 GLU A 109 LEU A 117 1 O ILE A 116 N ILE A 14 SHEET 5 A 6 PHE A 101 GLY A 105 -1 N VAL A 103 O TYR A 110 SHEET 6 A 6 VAL A 87 HIS A 92 -1 N GLN A 88 O ARG A 104 SHEET 1 B 5 LYS A 81 MET A 84 0 SHEET 2 B 5 THR A 34 GLU A 38 1 N ILE A 36 O LYS A 81 SHEET 3 B 5 HIS A 7 ILE A 14 1 N ILE A 13 O LEU A 35 SHEET 4 B 5 GLU A 109 LEU A 117 1 O ILE A 116 N ILE A 14 SHEET 5 B 5 LEU A 279 ALA A 281 1 O PHE A 280 N LEU A 117 SHEET 1 C 2 ALA A 121 PRO A 123 0 SHEET 2 C 2 HIS A 247 PRO A 249 -1 O VAL A 248 N ASP A 122 SHEET 1 D 5 VAL A 139 SER A 140 0 SHEET 2 D 5 GLY A 240 ILE A 243 1 O VAL A 241 N SER A 140 SHEET 3 D 5 LYS A 154 ILE A 158 1 N VAL A 156 O PHE A 242 SHEET 4 D 5 GLU A 177 ILE A 181 1 O ILE A 181 N VAL A 157 SHEET 5 D 5 MET A 203 ILE A 206 1 O ILE A 206 N VAL A 180 SHEET 1 E 3 THR A 209 GLY A 216 0 SHEET 2 E 3 VAL A 220 ASN A 227 -1 O LYS A 224 N GLU A 212 SHEET 3 E 3 VAL A 233 ALA A 237 -1 O SER A 234 N LEU A 225 SHEET 1 F 6 LYS B 81 MET B 84 0 SHEET 2 F 6 THR B 34 GLU B 38 1 N ILE B 36 O LYS B 81 SHEET 3 F 6 ASP B 8 ILE B 14 1 N ILE B 13 O LEU B 35 SHEET 4 F 6 GLU B 109 LEU B 117 1 O ARG B 111 N TYR B 9 SHEET 5 F 6 PHE B 101 GLY B 105 -1 N VAL B 103 O TYR B 110 SHEET 6 F 6 VAL B 87 HIS B 92 -1 N GLN B 88 O ARG B 104 SHEET 1 G 5 LYS B 81 MET B 84 0 SHEET 2 G 5 THR B 34 GLU B 38 1 N ILE B 36 O LYS B 81 SHEET 3 G 5 ASP B 8 ILE B 14 1 N ILE B 13 O LEU B 35 SHEET 4 G 5 GLU B 109 LEU B 117 1 O ARG B 111 N TYR B 9 SHEET 5 G 5 LEU B 279 ALA B 281 1 O PHE B 280 N LEU B 117 SHEET 1 H 2 ALA B 121 PRO B 123 0 SHEET 2 H 2 HIS B 247 PRO B 249 -1 O VAL B 248 N ASP B 122 SHEET 1 I 5 VAL B 139 SER B 140 0 SHEET 2 I 5 GLY B 240 ILE B 243 1 O ILE B 243 N SER B 140 SHEET 3 I 5 LYS B 154 ILE B 158 1 N VAL B 156 O PHE B 242 SHEET 4 I 5 GLU B 177 ILE B 181 1 O ILE B 181 N VAL B 157 SHEET 5 I 5 MET B 203 ILE B 206 1 O LYS B 204 N VAL B 180 SHEET 1 J 3 THR B 209 GLY B 216 0 SHEET 2 J 3 VAL B 220 ASN B 227 -1 O SER B 221 N GLN B 215 SHEET 3 J 3 VAL B 233 ALA B 237 -1 O SER B 234 N LEU B 225 SSBOND 1 CYS A 142 CYS A 145 1555 1555 2.10 SSBOND 2 CYS B 142 CYS B 145 1555 1555 2.11 CISPEP 1 HIS A 97 PRO A 98 0 3.06 CISPEP 2 HIS B 97 PRO B 98 0 0.14 SITE 1 AC1 23 GLY A 15 GLY A 17 PRO A 18 ALA A 19 SITE 2 AC1 23 LEU A 37 GLU A 38 LYS A 39 GLY A 44 SITE 3 AC1 23 GLN A 45 ILE A 46 ASN A 54 ASP A 85 SITE 4 AC1 23 GLU A 86 ALA A 118 THR A 119 GLY A 120 SITE 5 AC1 23 CYS A 145 GLY A 283 ASP A 284 ARG A 291 SITE 6 AC1 23 GLN A 292 LEU A 293 SER A 296 SITE 1 AC2 25 TYR A 26 GLY B 15 GLY B 17 PRO B 18 SITE 2 AC2 25 ALA B 19 LEU B 37 GLU B 38 LYS B 39 SITE 3 AC2 25 GLY B 44 GLN B 45 ILE B 46 SER B 49 SITE 4 AC2 25 ASN B 54 ASP B 85 GLU B 86 ALA B 118 SITE 5 AC2 25 THR B 119 GLY B 120 CYS B 145 GLY B 283 SITE 6 AC2 25 ASP B 284 ARG B 291 GLN B 292 LEU B 293 SITE 7 AC2 25 SER B 296 CRYST1 83.994 83.994 160.110 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011906 0.006874 0.000000 0.00000 SCALE2 0.000000 0.013747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006246 0.00000