HEADER IMMUNE SYSTEM 10-JUN-07 2Q8B TITLE STRUCTURE OF THE MALARIA ANTIGEN AMA1 IN COMPLEX WITH A GROWTH- TITLE 2 INHIBITORY ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: APICAL MEMBRANE ANTIGEN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAINS I AND II; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 1F9 LIGHT CHAIN; COMPND 8 CHAIN: L; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 1F9 HEAVY CHAIN; COMPND 11 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: AMA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 OTHER_DETAILS: HYBRIDOMA CELL LINE; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 19 ORGANISM_TAXID: 10090; SOURCE 20 OTHER_DETAILS: HYBRIDOMA CELL LINE KEYWDS ANTIGEN-ANTIBODY COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.GUPTA,V.J.MURPHY,R.F.ANDERS,A.H.BATCHELOR REVDAT 5 30-AUG-23 2Q8B 1 SEQADV REVDAT 4 10-SEP-14 2Q8B 1 JRNL REVDAT 3 13-JUL-11 2Q8B 1 VERSN REVDAT 2 24-FEB-09 2Q8B 1 VERSN REVDAT 1 09-OCT-07 2Q8B 0 JRNL AUTH A.M.COLEY,A.GUPTA,V.J.MURPHY,T.BAI,H.KIM,M.FOLEY,R.F.ANDERS, JRNL AUTH 2 A.H.BATCHELOR JRNL TITL STRUCTURE OF THE MALARIA ANTIGEN AMA1 IN COMPLEX WITH A JRNL TITL 2 GROWTH-INHIBITORY ANTIBODY JRNL REF PLOS PATHOG. V. 3 E138 2007 JRNL REFN ISSN 1553-7366 JRNL PMID 17907804 JRNL DOI 10.1371/JOURNAL.PPAT.0030138 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1899 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2594 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5378 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.51000 REMARK 3 B22 (A**2) : 1.29000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.68000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.313 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.046 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5522 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7539 ; 1.070 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 697 ; 5.814 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;38.370 ;25.126 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 829 ;15.476 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.465 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 837 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4247 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2235 ; 0.176 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3664 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 329 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.092 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3600 ; 0.358 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5672 ; 0.636 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2228 ; 0.915 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1867 ; 1.481 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 438 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6529 -11.2552 40.1561 REMARK 3 T TENSOR REMARK 3 T11: -0.1985 T22: -0.3216 REMARK 3 T33: -0.1919 T12: 0.0041 REMARK 3 T13: 0.0381 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 3.8147 L22: 0.8949 REMARK 3 L33: 1.4919 L12: -0.0099 REMARK 3 L13: 0.9970 L23: 0.0002 REMARK 3 S TENSOR REMARK 3 S11: 0.0345 S12: 0.0801 S13: -0.2311 REMARK 3 S21: -0.0680 S22: -0.0356 S23: 0.0278 REMARK 3 S31: 0.0536 S32: -0.2013 S33: 0.0011 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 106 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7983 6.6021 13.0479 REMARK 3 T TENSOR REMARK 3 T11: -0.0214 T22: 0.1751 REMARK 3 T33: -0.1113 T12: -0.0159 REMARK 3 T13: -0.0377 T23: 0.1142 REMARK 3 L TENSOR REMARK 3 L11: 7.4672 L22: 2.7463 REMARK 3 L33: 6.2943 L12: -0.4430 REMARK 3 L13: 1.7950 L23: -1.2231 REMARK 3 S TENSOR REMARK 3 S11: -0.3979 S12: 1.1588 S13: 0.6020 REMARK 3 S21: -0.1651 S22: 0.1074 S23: -0.2810 REMARK 3 S31: -0.4991 S32: -0.1930 S33: 0.2905 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 107 L 213 REMARK 3 ORIGIN FOR THE GROUP (A): -36.6413 -8.2443 -10.2787 REMARK 3 T TENSOR REMARK 3 T11: 0.3906 T22: 0.6036 REMARK 3 T33: 0.1742 T12: -0.0021 REMARK 3 T13: -0.1991 T23: -0.1803 REMARK 3 L TENSOR REMARK 3 L11: 10.7280 L22: 4.0518 REMARK 3 L33: 7.8402 L12: 4.3203 REMARK 3 L13: 3.5180 L23: 0.6608 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: 0.3174 S13: 0.1513 REMARK 3 S21: -0.7178 S22: 0.1366 S23: 0.8038 REMARK 3 S31: 0.1885 S32: -0.1428 S33: -0.1823 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 110 REMARK 3 ORIGIN FOR THE GROUP (A): -24.5483 -1.5382 28.5288 REMARK 3 T TENSOR REMARK 3 T11: -0.1086 T22: 0.3201 REMARK 3 T33: -0.1845 T12: 0.1822 REMARK 3 T13: 0.0409 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 6.6203 L22: 2.4886 REMARK 3 L33: 4.1916 L12: -0.3308 REMARK 3 L13: 1.4470 L23: -1.6121 REMARK 3 S TENSOR REMARK 3 S11: -0.2703 S12: -0.3738 S13: -0.0641 REMARK 3 S21: 0.1930 S22: 0.4217 S23: 0.2591 REMARK 3 S31: -0.3648 S32: -1.1197 S33: -0.1514 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 111 H 210 REMARK 3 ORIGIN FOR THE GROUP (A): -35.5331 -18.3923 2.6248 REMARK 3 T TENSOR REMARK 3 T11: 0.2933 T22: 0.5050 REMARK 3 T33: 0.3490 T12: -0.0716 REMARK 3 T13: -0.1872 T23: 0.0848 REMARK 3 L TENSOR REMARK 3 L11: 8.6325 L22: 6.1386 REMARK 3 L33: 22.2825 L12: 0.3447 REMARK 3 L13: -0.9471 L23: 7.1022 REMARK 3 S TENSOR REMARK 3 S11: 0.1903 S12: -0.5626 S13: -1.1025 REMARK 3 S21: 0.0547 S22: 0.0276 S23: 0.1470 REMARK 3 S31: 1.9239 S32: -0.1888 S33: -0.2179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MULTILAYER MIRRORS REMARK 200 OPTICS : OSMIC MULTILAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29000 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Z40, 2CGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM MES, 10 MM MNCL2, 6 % PEG 3350, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 92.45250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.74350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 92.45250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.74350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 603 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 103 REMARK 465 ASN A 104 REMARK 465 ASN A 264 REMARK 465 LYS A 265 REMARK 465 ASP A 266 REMARK 465 GLU A 267 REMARK 465 SER A 268 REMARK 465 LYS A 269 REMARK 465 ARG A 270 REMARK 465 ASN A 271 REMARK 465 SER A 272 REMARK 465 GLN A 355 REMARK 465 HIS A 356 REMARK 465 LEU A 357 REMARK 465 THR A 358 REMARK 465 ASP A 359 REMARK 465 TYR A 360 REMARK 465 GLU A 361 REMARK 465 LYS A 362 REMARK 465 ILE A 363 REMARK 465 LYS A 364 REMARK 465 GLU A 365 REMARK 465 GLY A 366 REMARK 465 PHE A 367 REMARK 465 LYS A 368 REMARK 465 ASN A 369 REMARK 465 LYS A 370 REMARK 465 ASN A 371 REMARK 465 ALA A 372 REMARK 465 SER A 373 REMARK 465 MET A 374 REMARK 465 ILE A 375 REMARK 465 LYS A 376 REMARK 465 SER A 377 REMARK 465 ALA A 378 REMARK 465 PHE A 379 REMARK 465 LEU A 380 REMARK 465 PRO A 381 REMARK 465 THR A 382 REMARK 465 GLY A 383 REMARK 465 ALA A 384 REMARK 465 PHE A 385 REMARK 465 LYS A 386 REMARK 465 ALA A 387 REMARK 465 CYS L 214 REMARK 465 GLY H 128 REMARK 465 ASP H 129 REMARK 465 THR H 130 REMARK 465 THR H 131 REMARK 465 GLY H 132 REMARK 465 SER H 155 REMARK 465 GLY H 156 REMARK 465 SER H 157 REMARK 465 LEU H 158 REMARK 465 SER H 159 REMARK 465 SER H 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 106 CG SD CE REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 TYR A 175 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 176 CG CD1 CD2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 LYS A 206 CE NZ REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 262 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 300 CD CE NZ REMARK 470 GLU A 354 CG CD OE1 OE2 REMARK 470 ARG A 389 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 9 CD CE NZ REMARK 470 LYS L 39 CE NZ REMARK 470 VAL L 80 CG1 CG2 REMARK 470 SER L 127 OG REMARK 470 LYS L 147 CD CE NZ REMARK 470 LYS L 149 CE NZ REMARK 470 ILE L 150 CG1 CG2 CD1 REMARK 470 SER L 153 OG REMARK 470 ARG L 155 CG CD NE CZ NH1 NH2 REMARK 470 GLN L 156 CG CD OE1 NE2 REMARK 470 LYS L 169 CG CD CE NZ REMARK 470 LYS L 183 CG CD CE NZ REMARK 470 GLU L 187 CG CD OE1 OE2 REMARK 470 SER L 203 OG REMARK 470 ARG L 211 NE CZ NH1 NH2 REMARK 470 ARG H 13 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 19 NZ REMARK 470 LYS H 30 CD CE NZ REMARK 470 CYS H 127 SG REMARK 470 SER H 134 OG REMARK 470 VAL H 135 CG1 CG2 REMARK 470 SER H 148 OG REMARK 470 GLN H 170 CG CD OE1 NE2 REMARK 470 SER H 171 OG REMARK 470 LEU H 173 CG CD1 CD2 REMARK 470 THR H 186 OG1 CG2 REMARK 470 SER H 189 OG REMARK 470 GLN H 190 CG CD OE1 NE2 REMARK 470 THR H 191 OG1 CG2 REMARK 470 LYS H 207 CE NZ REMARK 470 LYS H 208 CG CD CE NZ REMARK 470 LEU H 209 CG CD1 CD2 REMARK 470 GLU H 210 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 304 OE2 GLU A 436 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 131 56.31 -143.49 REMARK 500 SER A 146 11.84 -144.41 REMARK 500 LEU A 176 -35.70 -39.41 REMARK 500 ASP A 227 28.57 49.62 REMARK 500 PRO A 260 -18.71 -42.18 REMARK 500 TYR A 262 27.41 -145.28 REMARK 500 LYS A 280 74.94 -100.74 REMARK 500 ARG A 304 -73.66 -138.93 REMARK 500 ALA L 15 97.74 -61.83 REMARK 500 SER L 30 -121.25 52.47 REMARK 500 ALA L 51 -32.79 71.94 REMARK 500 SER L 52 -2.33 -144.64 REMARK 500 LEU L 83 106.46 -52.88 REMARK 500 LYS H 67 -43.75 -138.86 REMARK 500 SER H 85 61.51 38.84 REMARK 500 SER H 99 -119.84 49.48 REMARK 500 SER H 148 88.02 144.43 REMARK 500 SER H 171 15.68 59.88 REMARK 500 PRO H 188 48.94 -95.56 REMARK 500 REMARK 500 REMARK: NULL DBREF 2Q8B A 104 438 UNP Q7KQK5 Q7KQK5_PLAF7 104 438 DBREF 2Q8B L 1 214 PDB 2Q8B 2Q8B 1 214 DBREF 2Q8B H 1 210 PDB 2Q8B 2Q8B 1 210 SEQADV 2Q8B GLY A 103 UNP Q7KQK5 EXPRESSION TAG SEQRES 1 A 336 GLY ASN TYR MET GLY ASN PRO TRP THR GLU TYR MET ALA SEQRES 2 A 336 LYS TYR ASP ILE GLU GLU VAL HIS GLY SER GLY ILE ARG SEQRES 3 A 336 VAL ASP LEU GLY GLU ASP ALA GLU VAL ALA GLY THR GLN SEQRES 4 A 336 TYR ARG LEU PRO SER GLY LYS CYS PRO VAL PHE GLY LYS SEQRES 5 A 336 GLY ILE ILE ILE GLU ASN SER ASN THR THR PHE LEU THR SEQRES 6 A 336 PRO VAL ALA THR GLY ASN GLN TYR LEU LYS ASP GLY GLY SEQRES 7 A 336 PHE ALA PHE PRO PRO THR GLU PRO LEU MET SER PRO MET SEQRES 8 A 336 THR LEU ASP GLU MET ARG HIS PHE TYR LYS ASP ASN LYS SEQRES 9 A 336 TYR VAL LYS ASN LEU ASP GLU LEU THR LEU CYS SER ARG SEQRES 10 A 336 HIS ALA GLY ASN MET ILE PRO ASP ASN ASP LYS ASN SER SEQRES 11 A 336 ASN TYR LYS TYR PRO ALA VAL TYR ASP ASP LYS ASP LYS SEQRES 12 A 336 LYS CYS HIS ILE LEU TYR ILE ALA ALA GLN GLU ASN ASN SEQRES 13 A 336 GLY PRO ARG TYR CYS ASN LYS ASP GLU SER LYS ARG ASN SEQRES 14 A 336 SER MET PHE CYS PHE ARG PRO ALA LYS ASP ILE SER PHE SEQRES 15 A 336 GLN ASN TYR THR TYR LEU SER LYS ASN VAL VAL ASP ASN SEQRES 16 A 336 TRP GLU LYS VAL CYS PRO ARG LYS ASN LEU GLN ASN ALA SEQRES 17 A 336 LYS PHE GLY LEU TRP VAL ASP GLY ASN CYS GLU ASP ILE SEQRES 18 A 336 PRO HIS VAL ASN GLU PHE PRO ALA ILE ASP LEU PHE GLU SEQRES 19 A 336 CYS ASN LYS LEU VAL PHE GLU LEU SER ALA SER ASP GLN SEQRES 20 A 336 PRO LYS GLN TYR GLU GLN HIS LEU THR ASP TYR GLU LYS SEQRES 21 A 336 ILE LYS GLU GLY PHE LYS ASN LYS ASN ALA SER MET ILE SEQRES 22 A 336 LYS SER ALA PHE LEU PRO THR GLY ALA PHE LYS ALA ASP SEQRES 23 A 336 ARG TYR LYS SER HIS GLY LYS GLY TYR ASN TRP GLY ASN SEQRES 24 A 336 TYR ASN THR GLU THR GLN LYS CYS GLU ILE PHE ASN VAL SEQRES 25 A 336 LYS PRO THR CYS LEU ILE ASN ASN SER SER TYR ILE ALA SEQRES 26 A 336 THR THR ALA LEU SER HIS PRO ILE GLU VAL GLU SEQRES 1 L 214 SER ILE VAL MET THR GLN THR PRO LYS PHE LEU PRO VAL SEQRES 2 L 214 SER ALA GLY ASP ARG VAL THR ILE ILE CYS LYS ALA SER SEQRES 3 L 214 GLN SER VAL SER ASN ASP VAL VAL TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN SER PRO LYS LEU LEU ILE TYR TYR ALA SER SEQRES 5 L 214 ILE ARG TYR THR GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 L 214 GLY TYR GLY THR ASP PHE THR PHE THR ILE SER THR VAL SEQRES 7 L 214 GLN VAL GLU ASP LEU ALA VAL TYR PHE CYS GLN GLN GLY SEQRES 8 L 214 PHE SER SER PRO ARG THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 214 GLU ILE ASN ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS SEQRES 1 H 210 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU LEU ARG SEQRES 2 H 210 PRO GLY ALA SER VAL LYS LEU SER CYS ILE VAL SER GLY SEQRES 3 H 210 PHE LYS ILE LYS ASP THR SER MET HIS TRP VAL LYS GLN SEQRES 4 H 210 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 210 PRO ALA ASN ASP ASN SER GLU TYR ASP PRO LYS PHE GLN SEQRES 6 H 210 GLY LYS ALA THR ILE THR ALA ASP THR SER SER ASN THR SEQRES 7 H 210 ALA TYR LEU GLN LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 H 210 ALA VAL TYR TYR CYS THR LEU SER HIS PHE TRP GLY GLN SEQRES 9 H 210 GLY THR THR LEU THR VAL SER SER ALA LYS THR THR PRO SEQRES 10 H 210 PRO SER VAL TYR PRO LEU ALA PRO GLY CYS GLY ASP THR SEQRES 11 H 210 THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 12 H 210 TYR PHE PRO GLU SER VAL THR VAL THR TRP ASN SER GLY SEQRES 13 H 210 SER LEU SER SER SER VAL HIS THR PHE PRO ALA LEU LEU SEQRES 14 H 210 GLN SER GLY LEU TYR THR MET SER SER SER VAL THR VAL SEQRES 15 H 210 PRO SER SER THR TRP PRO SER GLN THR VAL THR CYS SER SEQRES 16 H 210 VAL ALA HIS PRO ALA SER SER THR THR VAL ASP LYS LYS SEQRES 17 H 210 LEU GLU FORMUL 4 HOH *220(H2 O) HELIX 1 1 TRP A 110 ALA A 115 1 6 HELIX 2 2 ASP A 118 HIS A 123 1 6 HELIX 3 3 TYR A 175 GLY A 179 5 5 HELIX 4 4 LEU A 195 TYR A 202 1 8 HELIX 5 5 TYR A 207 LEU A 211 5 5 HELIX 6 6 ASP A 212 GLY A 222 1 11 HELIX 7 7 ASN A 223 MET A 224 5 2 HELIX 8 8 ILE A 225 ASP A 229 5 5 HELIX 9 9 ASP A 281 GLN A 285 5 5 HELIX 10 10 ASN A 297 CYS A 302 1 6 HELIX 11 11 ASP A 333 SER A 345 1 13 HELIX 12 12 GLN L 79 LEU L 83 5 5 HELIX 13 13 SER L 121 THR L 126 1 6 HELIX 14 14 LYS L 183 HIS L 189 1 7 HELIX 15 15 LYS H 28 THR H 32 5 5 HELIX 16 16 PRO H 62 GLN H 65 5 4 HELIX 17 17 THR H 87 THR H 91 5 5 SHEET 1 A 2 GLU A 133 VAL A 137 0 SHEET 2 A 2 THR A 140 LEU A 144 -1 O THR A 140 N VAL A 137 SHEET 1 B 5 VAL A 151 PHE A 152 0 SHEET 2 B 5 TYR A 287 LEU A 290 -1 O TYR A 289 N VAL A 151 SHEET 3 B 5 ALA A 238 ASP A 241 -1 N ALA A 238 O LEU A 290 SHEET 4 B 5 LYS A 246 ILE A 249 -1 O HIS A 248 N VAL A 239 SHEET 5 B 5 MET A 193 THR A 194 -1 N MET A 193 O CYS A 247 SHEET 1 C 2 GLY A 155 ILE A 158 0 SHEET 2 C 2 PHE A 276 ALA A 279 -1 O ARG A 277 N ILE A 157 SHEET 1 D 5 LEU A 307 GLN A 308 0 SHEET 2 D 5 TYR A 425 THR A 429 -1 O ALA A 427 N LEU A 307 SHEET 3 D 5 TRP A 399 ASN A 403 -1 N TYR A 402 O ILE A 426 SHEET 4 D 5 LYS A 408 PHE A 412 -1 O GLU A 410 N ASN A 401 SHEET 5 D 5 ASN A 327 PRO A 330 -1 N PHE A 329 O CYS A 409 SHEET 1 E 3 CYS A 320 ASP A 322 0 SHEET 2 E 3 LYS A 311 TRP A 315 -1 N LEU A 314 O GLU A 321 SHEET 3 E 3 CYS A 418 ILE A 420 -1 O ILE A 420 N LYS A 311 SHEET 1 F 4 MET L 4 THR L 7 0 SHEET 2 F 4 VAL L 19 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 F 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 F 4 PHE L 62 TYR L 67 -1 N THR L 63 O THR L 74 SHEET 1 G 6 PHE L 10 SER L 14 0 SHEET 2 G 6 THR L 102 ASN L 107 1 O ASN L 107 N VAL L 13 SHEET 3 G 6 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 G 6 VAL L 33 GLN L 38 -1 N TYR L 36 O PHE L 87 SHEET 5 G 6 LYS L 45 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 G 6 ILE L 53 ARG L 54 -1 O ILE L 53 N TYR L 49 SHEET 1 H 4 THR L 114 PHE L 118 0 SHEET 2 H 4 GLY L 129 PHE L 139 -1 O PHE L 135 N SER L 116 SHEET 3 H 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 H 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 I 3 ASN L 145 ILE L 150 0 SHEET 2 I 3 SER L 191 THR L 197 -1 O THR L 197 N ASN L 145 SHEET 3 I 3 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SHEET 1 J 4 GLN H 3 GLN H 6 0 SHEET 2 J 4 VAL H 18 SER H 25 -1 O ILE H 23 N GLN H 5 SHEET 3 J 4 THR H 78 LEU H 83 -1 O LEU H 81 N LEU H 20 SHEET 4 J 4 ALA H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 K 6 GLU H 10 LEU H 12 0 SHEET 2 K 6 THR H 106 VAL H 110 1 O THR H 109 N GLU H 10 SHEET 3 K 6 ALA H 92 LEU H 98 -1 N ALA H 92 O LEU H 108 SHEET 4 K 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 K 6 LEU H 45 ASP H 52 -1 O GLU H 46 N LYS H 38 SHEET 6 K 6 ASN H 57 TYR H 60 -1 O ASN H 57 N ASP H 52 SHEET 1 L 4 GLU H 10 LEU H 12 0 SHEET 2 L 4 THR H 106 VAL H 110 1 O THR H 109 N GLU H 10 SHEET 3 L 4 ALA H 92 LEU H 98 -1 N ALA H 92 O LEU H 108 SHEET 4 L 4 PHE H 101 TRP H 102 -1 O PHE H 101 N LEU H 98 SHEET 1 M 4 SER H 119 LEU H 123 0 SHEET 2 M 4 SER H 134 TYR H 144 -1 O LEU H 140 N TYR H 121 SHEET 3 M 4 LEU H 173 PRO H 183 -1 O VAL H 180 N LEU H 137 SHEET 4 M 4 HIS H 163 GLN H 170 -1 N PHE H 165 O SER H 177 SHEET 1 N 3 THR H 150 ASN H 154 0 SHEET 2 N 3 THR H 193 HIS H 198 -1 O ALA H 197 N THR H 150 SHEET 3 N 3 THR H 203 LYS H 208 -1 O VAL H 205 N VAL H 196 SSBOND 1 CYS A 149 CYS A 302 1555 1555 2.03 SSBOND 2 CYS A 217 CYS A 247 1555 1555 2.04 SSBOND 3 CYS A 263 CYS A 275 1555 1555 2.03 SSBOND 4 CYS A 320 CYS A 418 1555 1555 2.04 SSBOND 5 CYS A 337 CYS A 409 1555 1555 2.03 SSBOND 6 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 7 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 8 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 9 CYS H 139 CYS H 194 1555 1555 2.03 CISPEP 1 GLU A 187 PRO A 188 0 4.18 CISPEP 2 SER A 191 PRO A 192 0 -1.13 CISPEP 3 THR L 7 PRO L 8 0 -3.02 CISPEP 4 SER L 94 PRO L 95 0 0.77 CISPEP 5 TYR L 140 PRO L 141 0 4.06 CISPEP 6 PHE H 145 PRO H 146 0 -3.04 CISPEP 7 TRP H 187 PRO H 188 0 -1.52 CRYST1 184.905 51.487 95.257 90.00 108.49 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005408 0.000000 0.001809 0.00000 SCALE2 0.000000 0.019422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011069 0.00000