HEADER HORMONE RECEPTOR 11-JUN-07 2Q8S TITLE X-RAY CRYSTAL STRUCTURE OF THE NUCLEAR HORMONE RECEPTOR PPAR-GAMMA IN TITLE 2 A COMPLEX WITH A PPAR GAMMA/ALPHA DUAL AGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (RESIDUE 235-505); COMPND 5 SYNONYM: PPAR-GAMMA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: PPARG, NR1C3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS LIGAND-BOUND COMPLEX, HORMONE RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR J.F.OHREN REVDAT 4 30-AUG-23 2Q8S 1 REMARK REVDAT 3 13-JUL-11 2Q8S 1 VERSN REVDAT 2 24-FEB-09 2Q8S 1 VERSN REVDAT 1 14-OCT-08 2Q8S 0 JRNL AUTH A.CASIMIRO-GARCIA,C.F.BIGGE,J.A.DAVIS,T.PADALINO,J.PULASKI, JRNL AUTH 2 J.F.OHREN,P.MCCONNELL,C.D.KANE,L.J.ROYER,K.A.STEVENS, JRNL AUTH 3 B.J.AUERBACH,W.T.COLLARD,C.MCGREGOR,S.A.FAKHOURY,R.P.SCHAUM, JRNL AUTH 4 H.ZHOU JRNL TITL EFFECTS OF MODIFICATIONS OF THE LINKER IN A SERIES OF JRNL TITL 2 PHENYLPROPANOIC ACID DERIVATIVES: SYNTHESIS, EVALUATION AS JRNL TITL 3 PPARALPHA/GAMMA DUAL AGONISTS, AND X-RAY CRYSTALLOGRAPHIC JRNL TITL 4 STUDIES. JRNL REF BIOORG.MED.CHEM. V. 16 4883 2008 JRNL REFN ISSN 0968-0896 JRNL PMID 18394907 JRNL DOI 10.1016/J.BMC.2008.03.043 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 26150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1315 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.53000 REMARK 3 B22 (A**2) : 7.23000 REMARK 3 B33 (A**2) : -5.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.76000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.352 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.270 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.235 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.306 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4162 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3919 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5599 ; 1.143 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9164 ; 1.124 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 501 ; 5.203 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;38.658 ;25.464 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 809 ;17.038 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.345 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 646 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4467 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 784 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 986 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3841 ; 0.160 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2046 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2333 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 92 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.181 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.039 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3312 ; 0.610 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1022 ; 0.069 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4083 ; 0.690 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1918 ; 0.882 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1516 ; 1.359 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 207 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4710 49.7270 14.0420 REMARK 3 T TENSOR REMARK 3 T11: -0.2045 T22: -0.1952 REMARK 3 T33: 0.0021 T12: 0.0781 REMARK 3 T13: 0.0174 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.1907 L22: 2.0149 REMARK 3 L33: 8.1767 L12: 0.1930 REMARK 3 L13: -1.5253 L23: -3.6998 REMARK 3 S TENSOR REMARK 3 S11: -0.3196 S12: 0.2062 S13: -0.1709 REMARK 3 S21: -0.1651 S22: 0.2896 S23: 0.1060 REMARK 3 S31: -0.0285 S32: -0.7177 S33: 0.0300 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 240 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1530 65.6770 -2.7350 REMARK 3 T TENSOR REMARK 3 T11: -0.1545 T22: -0.1027 REMARK 3 T33: -0.2546 T12: -0.1087 REMARK 3 T13: 0.0872 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 17.6579 L22: 5.0371 REMARK 3 L33: 7.0923 L12: 2.6328 REMARK 3 L13: 0.2102 L23: -1.3694 REMARK 3 S TENSOR REMARK 3 S11: 0.1823 S12: 1.3354 S13: 0.9797 REMARK 3 S21: 0.4071 S22: 0.3124 S23: 0.4812 REMARK 3 S31: -0.9608 S32: 0.2298 S33: -0.4947 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 276 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1910 69.8090 12.9730 REMARK 3 T TENSOR REMARK 3 T11: -0.1055 T22: -0.0700 REMARK 3 T33: -0.0565 T12: 0.0031 REMARK 3 T13: -0.1235 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 35.4452 L22: 10.5857 REMARK 3 L33: 22.4333 L12: 13.5162 REMARK 3 L13: -28.0763 L23: -9.6800 REMARK 3 S TENSOR REMARK 3 S11: 0.3879 S12: 0.9694 S13: 1.7057 REMARK 3 S21: 0.1191 S22: 0.3785 S23: 0.4608 REMARK 3 S31: -0.8896 S32: -0.3305 S33: -0.7664 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5910 56.9600 21.3550 REMARK 3 T TENSOR REMARK 3 T11: -0.0679 T22: -0.2631 REMARK 3 T33: -0.0444 T12: 0.1501 REMARK 3 T13: -0.0017 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.0272 L22: 0.5613 REMARK 3 L33: 7.6517 L12: 1.0072 REMARK 3 L13: -1.8760 L23: -1.0835 REMARK 3 S TENSOR REMARK 3 S11: -0.1532 S12: -0.2436 S13: 0.0282 REMARK 3 S21: 0.1539 S22: 0.1145 S23: -0.0255 REMARK 3 S31: -0.5135 S32: 0.2182 S33: 0.0387 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 348 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2520 56.7730 9.2550 REMARK 3 T TENSOR REMARK 3 T11: -0.2448 T22: 0.0610 REMARK 3 T33: -0.0720 T12: 0.0556 REMARK 3 T13: 0.0109 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 6.2136 L22: 10.7176 REMARK 3 L33: 5.5415 L12: 6.5032 REMARK 3 L13: -2.5140 L23: -3.6036 REMARK 3 S TENSOR REMARK 3 S11: -0.1968 S12: -0.1350 S13: -0.5937 REMARK 3 S21: 0.1538 S22: 0.0478 S23: -0.8089 REMARK 3 S31: -0.1747 S32: 1.2895 S33: 0.1490 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 381 A 424 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5610 45.4110 26.9690 REMARK 3 T TENSOR REMARK 3 T11: -0.1135 T22: -0.2010 REMARK 3 T33: 0.0478 T12: 0.2155 REMARK 3 T13: 0.0718 T23: 0.1011 REMARK 3 L TENSOR REMARK 3 L11: 1.3769 L22: 1.6687 REMARK 3 L33: 7.6384 L12: -0.2304 REMARK 3 L13: 1.7204 L23: 1.0712 REMARK 3 S TENSOR REMARK 3 S11: -0.2786 S12: -0.1853 S13: -0.3322 REMARK 3 S21: 0.3266 S22: 0.2678 S23: 0.0959 REMARK 3 S31: 0.2301 S32: 0.1074 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 430 A 474 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5330 57.7740 22.4430 REMARK 3 T TENSOR REMARK 3 T11: -0.2155 T22: -0.0368 REMARK 3 T33: -0.1516 T12: 0.1617 REMARK 3 T13: -0.0953 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.9959 L22: 11.4297 REMARK 3 L33: 1.1636 L12: 3.8765 REMARK 3 L13: -0.1182 L23: 1.7466 REMARK 3 S TENSOR REMARK 3 S11: 0.1335 S12: -0.5206 S13: -0.2699 REMARK 3 S21: 0.4934 S22: -0.1252 S23: -0.8324 REMARK 3 S31: 0.1290 S32: 0.5013 S33: -0.0083 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 210 B 237 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0430 21.6110 35.0230 REMARK 3 T TENSOR REMARK 3 T11: -0.0268 T22: -0.4167 REMARK 3 T33: -0.0524 T12: 0.0846 REMARK 3 T13: 0.0679 T23: 0.0763 REMARK 3 L TENSOR REMARK 3 L11: 2.8632 L22: 3.8713 REMARK 3 L33: 11.3662 L12: 0.5903 REMARK 3 L13: 2.3925 L23: 2.4627 REMARK 3 S TENSOR REMARK 3 S11: 0.2189 S12: -0.3272 S13: -0.6011 REMARK 3 S21: 0.4819 S22: -0.0457 S23: -0.3341 REMARK 3 S31: 0.9880 S32: -0.1530 S33: -0.1732 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 240 B 260 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4260 32.0820 55.0900 REMARK 3 T TENSOR REMARK 3 T11: -0.3366 T22: 0.0045 REMARK 3 T33: -0.5160 T12: 0.1678 REMARK 3 T13: -0.0134 T23: 0.1225 REMARK 3 L TENSOR REMARK 3 L11: 18.1485 L22: 10.7507 REMARK 3 L33: 20.3296 L12: -0.4133 REMARK 3 L13: 3.1451 L23: 6.1448 REMARK 3 S TENSOR REMARK 3 S11: 0.6275 S12: -0.8213 S13: -0.8180 REMARK 3 S21: 1.0211 S22: -0.3863 S23: -0.7629 REMARK 3 S31: 0.6732 S32: 1.5127 S33: -0.2412 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 276 B 291 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3640 37.5570 40.7170 REMARK 3 T TENSOR REMARK 3 T11: -0.1117 T22: 0.0242 REMARK 3 T33: -0.1942 T12: -0.0354 REMARK 3 T13: 0.0978 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 6.3348 L22: 44.3030 REMARK 3 L33: 35.7062 L12: 8.8942 REMARK 3 L13: 8.8281 L23: 34.7348 REMARK 3 S TENSOR REMARK 3 S11: -0.3850 S12: -0.6836 S13: -0.0421 REMARK 3 S21: -0.0837 S22: 0.9147 S23: 0.1318 REMARK 3 S31: -0.9664 S32: 2.2093 S33: -0.5297 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 297 B 345 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0470 30.0960 29.1180 REMARK 3 T TENSOR REMARK 3 T11: -0.0799 T22: -0.3196 REMARK 3 T33: -0.0184 T12: 0.1358 REMARK 3 T13: 0.0268 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.8350 L22: 0.9517 REMARK 3 L33: 7.7328 L12: -0.3113 REMARK 3 L13: -0.7978 L23: 1.3731 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: -0.0071 S13: -0.0933 REMARK 3 S21: 0.1435 S22: 0.0967 S23: -0.0152 REMARK 3 S31: 0.0531 S32: 0.2933 S33: -0.1286 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 348 B 378 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3620 42.8340 43.1330 REMARK 3 T TENSOR REMARK 3 T11: 0.2434 T22: -0.2938 REMARK 3 T33: -0.1469 T12: 0.0445 REMARK 3 T13: 0.0806 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 19.7577 L22: 6.2484 REMARK 3 L33: 9.1586 L12: 7.6762 REMARK 3 L13: 9.7318 L23: 4.2827 REMARK 3 S TENSOR REMARK 3 S11: -0.6882 S12: 0.0467 S13: 1.2794 REMARK 3 S21: 0.0390 S22: 0.1592 S23: 0.5317 REMARK 3 S31: -1.3665 S32: 0.5254 S33: 0.5290 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 381 B 424 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4360 29.2730 21.5980 REMARK 3 T TENSOR REMARK 3 T11: -0.0733 T22: -0.3481 REMARK 3 T33: 0.0323 T12: 0.1756 REMARK 3 T13: 0.0155 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 4.2596 L22: 1.6865 REMARK 3 L33: 6.1795 L12: 1.6690 REMARK 3 L13: -2.1912 L23: -2.2493 REMARK 3 S TENSOR REMARK 3 S11: 0.0821 S12: 0.3159 S13: -0.0605 REMARK 3 S21: -0.0775 S22: -0.0842 S23: 0.2190 REMARK 3 S31: -0.0142 S32: -0.2684 S33: 0.0021 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 430 B 474 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3750 41.9550 31.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: -0.3541 REMARK 3 T33: -0.1639 T12: 0.1110 REMARK 3 T13: 0.1058 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 19.2625 L22: 2.1341 REMARK 3 L33: 1.6889 L12: 2.7317 REMARK 3 L13: 2.7559 L23: 0.1365 REMARK 3 S TENSOR REMARK 3 S11: 0.2038 S12: 0.3088 S13: 1.5196 REMARK 3 S21: 0.1521 S22: -0.0987 S23: 0.1989 REMARK 3 S31: -0.2858 S32: 0.2288 S33: -0.1051 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1001 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1730 64.0190 12.9060 REMARK 3 T TENSOR REMARK 3 T11: -0.0092 T22: -0.2222 REMARK 3 T33: 0.1568 T12: -0.0520 REMARK 3 T13: -0.1082 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 24.8450 L22: 69.9395 REMARK 3 L33: 97.0873 L12: 9.0852 REMARK 3 L13: -11.8821 L23: -82.3778 REMARK 3 S TENSOR REMARK 3 S11: -0.2759 S12: -0.5744 S13: -3.2460 REMARK 3 S21: 0.7412 S22: -0.4555 S23: -1.1287 REMARK 3 S31: -3.6547 S32: -1.2117 S33: 0.7314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q8S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CRK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM IMMIDIZOLE, 860 MM SODIUM REMARK 280 CITRATE, GLYCEROL 5 % (V/V) , PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.72750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.00800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.72750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.00800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FORMS A HOMDIMER IN THIS CRYSTAL FORM THAT MIMICS THE REMARK 300 FUNCTIONAL RXR HETERODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 261 REMARK 465 ILE A 262 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 ASP A 475 REMARK 465 LEU A 476 REMARK 465 TYR A 477 REMARK 465 THR B 238 REMARK 465 HIS B 266 REMARK 465 ILE B 267 REMARK 465 THR B 268 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 465 HIS B 466 REMARK 465 LEU B 476 REMARK 465 TYR B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 461 OG1 CG2 REMARK 470 ARG B 357 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 358 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 357 157.31 -29.22 REMARK 500 LEU A 393 56.00 -95.99 REMARK 500 LYS B 240 107.62 -165.57 REMARK 500 ASP B 310 131.03 -33.44 REMARK 500 SER B 355 34.00 -90.37 REMARK 500 ARG B 357 -179.39 -178.87 REMARK 500 LEU B 393 46.12 -82.83 REMARK 500 THR B 459 -60.06 -128.89 REMARK 500 TYR B 473 48.96 -99.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE L92 A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PRG RELATED DB: PDB DBREF 2Q8S A 207 477 UNP P37231 PPARG_HUMAN 235 505 DBREF 2Q8S B 207 477 UNP P37231 PPARG_HUMAN 235 505 SEQRES 1 A 271 GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR SEQRES 2 A 271 ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS ALA LYS SEQRES 3 A 271 ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP LYS SER SEQRES 4 A 271 PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET MET GLY SEQRES 5 A 271 GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO LEU GLN SEQRES 6 A 271 GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY SEQRES 7 A 271 CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU ILE THR SEQRES 8 A 271 GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN LEU ASP SEQRES 9 A 271 LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS SEQRES 10 A 271 GLU ILE ILE TYR THR MET LEU ALA SER LEU MET ASN LYS SEQRES 11 A 271 ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE MET THR SEQRES 12 A 271 ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE GLY ASP SEQRES 13 A 271 PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN SEQRES 14 A 271 ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE PHE ILE SEQRES 15 A 271 ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY LEU LEU SEQRES 16 A 271 ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU SEQRES 17 A 271 GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SEQRES 18 A 271 SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS MET THR SEQRES 19 A 271 ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN LEU LEU SEQRES 20 A 271 GLN VAL ILE LYS LYS THR GLU THR ASP MET SER LEU HIS SEQRES 21 A 271 PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR SEQRES 1 B 271 GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR SEQRES 2 B 271 ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS ALA LYS SEQRES 3 B 271 ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP LYS SER SEQRES 4 B 271 PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET MET GLY SEQRES 5 B 271 GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO LEU GLN SEQRES 6 B 271 GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY SEQRES 7 B 271 CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU ILE THR SEQRES 8 B 271 GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN LEU ASP SEQRES 9 B 271 LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS SEQRES 10 B 271 GLU ILE ILE TYR THR MET LEU ALA SER LEU MET ASN LYS SEQRES 11 B 271 ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE MET THR SEQRES 12 B 271 ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE GLY ASP SEQRES 13 B 271 PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN SEQRES 14 B 271 ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE PHE ILE SEQRES 15 B 271 ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY LEU LEU SEQRES 16 B 271 ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU SEQRES 17 B 271 GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SEQRES 18 B 271 SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS MET THR SEQRES 19 B 271 ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN LEU LEU SEQRES 20 B 271 GLN VAL ILE LYS LYS THR GLU THR ASP MET SER LEU HIS SEQRES 21 B 271 PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR HET L92 A1001 31 HETNAM L92 (2S)-3-{4-[3-(5-METHYL-2-PHENYL-1,3-OXAZOL-4-YL) HETNAM 2 L92 PROPYL]PHENYL}-2-(1H-PYRROL-1-YL)PROPANOIC ACID FORMUL 3 L92 C26 H26 N2 O3 FORMUL 4 HOH *59(H2 O) HELIX 1 1 GLU A 207 PHE A 226 1 20 HELIX 2 2 THR A 229 GLY A 239 1 11 HELIX 3 3 ASP A 251 GLU A 259 1 9 HELIX 4 4 GLU A 276 SER A 302 1 27 HELIX 5 5 ASP A 310 SER A 332 1 23 HELIX 6 6 ARG A 350 SER A 355 1 6 HELIX 7 7 MET A 364 ALA A 376 1 13 HELIX 8 8 ASP A 380 LEU A 393 1 14 HELIX 9 9 ASN A 402 HIS A 425 1 24 HELIX 10 10 GLN A 430 GLU A 460 1 31 HELIX 11 11 HIS A 466 LYS A 474 1 9 HELIX 12 12 GLU B 207 PHE B 226 1 20 HELIX 13 13 THR B 229 LEU B 237 1 9 HELIX 14 14 ASP B 251 ILE B 262 1 12 HELIX 15 15 GLU B 276 ILE B 303 1 28 HELIX 16 16 ASP B 310 LEU B 333 1 24 HELIX 17 17 ARG B 350 SER B 355 1 6 HELIX 18 18 MET B 364 ALA B 376 1 13 HELIX 19 19 ASP B 380 LEU B 393 1 14 HELIX 20 20 ASN B 402 HIS B 425 1 24 HELIX 21 21 GLN B 430 LYS B 458 1 29 HELIX 22 22 LEU B 468 TYR B 473 1 6 SHEET 1 A 4 PHE A 247 ILE A 249 0 SHEET 2 A 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 A 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 A 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 SHEET 1 B 4 PHE B 247 ILE B 249 0 SHEET 2 B 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 B 4 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 SHEET 4 B 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 SITE 1 AC1 11 PHE A 282 GLY A 284 CYS A 285 ARG A 288 SITE 2 AC1 11 SER A 289 HIS A 323 TYR A 327 LEU A 330 SITE 3 AC1 11 LEU A 353 HIS A 449 TYR A 473 CRYST1 93.455 62.016 118.660 90.00 102.54 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010700 0.000000 0.002381 0.00000 SCALE2 0.000000 0.016125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008633 0.00000