HEADER HYDROLASE 13-JUN-07 2Q9P TITLE HUMAN DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1, MG-F COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIPP-1, DIADENOSINE 5',5'''-P1,P6-HEXAPHOSPHATE HYDROLASE 1, COMPND 5 NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 3, NUDIX MOTIF 3; COMPND 6 EC: 3.6.1.52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: UTERUS; SOURCE 6 GENE: NUDT3, DIPP, DIPP1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE, NUDIX, INOSITOL KEYWDS 2 PYROPHOSPHATE METABOLISM, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.G.THORSELL,R.BUSAM,C.H.ARROWSMITH,H.BERGLUND,R.COLLINS, AUTHOR 2 L.G.DAHLGREN,A.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 L.HOLMBERG-SCHIAVONE,I.JOHANSSON,A.KALLAS,T.KARLBERG,T.KOTENYOVA, AUTHOR 4 L.LEHTIO,M.MOCHE,P.NORDLUND,T.NYMAN,D.OGG,J.SAGEMARK,M.SUNDSTROM, AUTHOR 5 S.VAN DEN BERG,J.WEIGELT,M.WELIN,C.PERSSON,B.M.HALLBERG,STRUCTURAL AUTHOR 6 GENOMICS CONSORTIUM (SGC) REVDAT 6 30-AUG-23 2Q9P 1 REMARK REVDAT 5 14-OCT-20 2Q9P 1 REMARK SEQADV HETSYN LINK REVDAT 4 25-AUG-09 2Q9P 1 JRNL REVDAT 3 28-JUL-09 2Q9P 1 JRNL REVDAT 2 24-FEB-09 2Q9P 1 VERSN REVDAT 1 11-SEP-07 2Q9P 0 JRNL AUTH A.G.THORSELL,C.PERSSON,S.GRASLUND,M.HAMMARSTROM,R.D.BUSAM, JRNL AUTH 2 B.M.HALLBERG JRNL TITL CRYSTAL STRUCTURE OF HUMAN DIPHOSPHOINOSITOL PHOSPHATASE 1. JRNL REF PROTEINS V. 77 242 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19585659 JRNL DOI 10.1002/PROT.22489 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1067 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1404 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.277 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1210 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 819 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1661 ; 1.846 ; 1.909 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1960 ; 1.001 ; 2.990 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 139 ; 6.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;32.112 ;23.443 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 204 ;13.810 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.631 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 183 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1294 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 247 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 270 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 891 ; 0.215 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 567 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 649 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 127 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.027 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.188 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.084 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 17 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 873 ; 1.591 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 276 ; 0.357 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1100 ; 1.761 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 615 ; 3.211 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 561 ; 4.469 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE WAS DETERMINED STARTING FROM REMARK 3 RIGID BODY REFINEMENT OF THE PDB ENTRY 2FVV WITH REFMAC 5 REMARK 3 PROGRAM. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 2Q9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : HELIOS MULTILAYER REMARK 200 OPTICS : HELIOS MULTILAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20848 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: PDB ENTRY 2FVV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 200 MM LICL, 5 MM MGCL2, REMARK 280 20 MM NAF, 5 MM IP6, PH 4.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.59650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.27350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.72200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.27350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.59650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.72200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 GLN A 8 REMARK 465 THR A 9 REMARK 465 THR A 142 REMARK 465 LEU A 143 REMARK 465 ARG A 144 REMARK 465 GLN A 145 REMARK 465 GLY A 146 REMARK 465 TYR A 147 REMARK 465 SER A 148 REMARK 465 ALA A 149 REMARK 465 ASN A 150 REMARK 465 ASN A 151 REMARK 465 GLY A 152 REMARK 465 THR A 153 REMARK 465 PRO A 154 REMARK 465 VAL A 155 REMARK 465 VAL A 156 REMARK 465 ALA A 157 REMARK 465 THR A 158 REMARK 465 THR A 159 REMARK 465 TYR A 160 REMARK 465 SER A 161 REMARK 465 VAL A 162 REMARK 465 SER A 163 REMARK 465 ALA A 164 REMARK 465 GLN A 165 REMARK 465 SER A 166 REMARK 465 SER A 167 REMARK 465 MET A 168 REMARK 465 SER A 169 REMARK 465 GLY A 170 REMARK 465 ILE A 171 REMARK 465 ARG A 172 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 50 O REMARK 620 2 GLU A 70 OE2 83.8 REMARK 620 3 IHP A 201 O24 99.5 172.9 REMARK 620 4 IHP A 201 O35 86.4 162.4 15.5 REMARK 620 5 IHP A 201 O24 159.5 84.9 93.7 108.5 REMARK 620 6 IHP A 201 O35 176.8 95.1 82.0 95.5 17.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 66 OE1 REMARK 620 2 GLU A 70 OE2 91.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FVV RELATED DB: PDB REMARK 900 HUMAN DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 DBREF 2Q9P A 1 172 UNP O95989 NUDT3_HUMAN 1 172 SEQADV 2Q9P MET A -21 UNP O95989 EXPRESSION TAG SEQADV 2Q9P HIS A -20 UNP O95989 EXPRESSION TAG SEQADV 2Q9P HIS A -19 UNP O95989 EXPRESSION TAG SEQADV 2Q9P HIS A -18 UNP O95989 EXPRESSION TAG SEQADV 2Q9P HIS A -17 UNP O95989 EXPRESSION TAG SEQADV 2Q9P HIS A -16 UNP O95989 EXPRESSION TAG SEQADV 2Q9P HIS A -15 UNP O95989 EXPRESSION TAG SEQADV 2Q9P SER A -14 UNP O95989 EXPRESSION TAG SEQADV 2Q9P SER A -13 UNP O95989 EXPRESSION TAG SEQADV 2Q9P GLY A -12 UNP O95989 EXPRESSION TAG SEQADV 2Q9P VAL A -11 UNP O95989 EXPRESSION TAG SEQADV 2Q9P ASP A -10 UNP O95989 EXPRESSION TAG SEQADV 2Q9P LEU A -9 UNP O95989 EXPRESSION TAG SEQADV 2Q9P GLY A -8 UNP O95989 EXPRESSION TAG SEQADV 2Q9P THR A -7 UNP O95989 EXPRESSION TAG SEQADV 2Q9P GLU A -6 UNP O95989 EXPRESSION TAG SEQADV 2Q9P ASN A -5 UNP O95989 EXPRESSION TAG SEQADV 2Q9P LEU A -4 UNP O95989 EXPRESSION TAG SEQADV 2Q9P TYR A -3 UNP O95989 EXPRESSION TAG SEQADV 2Q9P PHE A -2 UNP O95989 EXPRESSION TAG SEQADV 2Q9P GLN A -1 UNP O95989 EXPRESSION TAG SEQADV 2Q9P SER A 0 UNP O95989 EXPRESSION TAG SEQRES 1 A 194 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 194 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET LYS LEU SEQRES 3 A 194 LYS SER ASN GLN THR ARG THR TYR ASP GLY ASP GLY TYR SEQRES 4 A 194 LYS LYS ARG ALA ALA CYS LEU CYS PHE ARG SER GLU SER SEQRES 5 A 194 GLU GLU GLU VAL LEU LEU VAL SER SER SER ARG HIS PRO SEQRES 6 A 194 ASP ARG TRP ILE VAL PRO GLY GLY GLY MET GLU PRO GLU SEQRES 7 A 194 GLU GLU PRO SER VAL ALA ALA VAL ARG GLU VAL CYS GLU SEQRES 8 A 194 GLU ALA GLY VAL LYS GLY THR LEU GLY ARG LEU VAL GLY SEQRES 9 A 194 ILE PHE GLU ASN GLN GLU ARG LYS HIS ARG THR TYR VAL SEQRES 10 A 194 TYR VAL LEU ILE VAL THR GLU VAL LEU GLU ASP TRP GLU SEQRES 11 A 194 ASP SER VAL ASN ILE GLY ARG LYS ARG GLU TRP PHE LYS SEQRES 12 A 194 ILE GLU ASP ALA ILE LYS VAL LEU GLN TYR HIS LYS PRO SEQRES 13 A 194 VAL GLN ALA SER TYR PHE GLU THR LEU ARG GLN GLY TYR SEQRES 14 A 194 SER ALA ASN ASN GLY THR PRO VAL VAL ALA THR THR TYR SEQRES 15 A 194 SER VAL SER ALA GLN SER SER MET SER GLY ILE ARG HET MG A 301 1 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET CL A 401 1 HET F A 402 1 HET F A 403 1 HET F A 404 1 HET F A 405 1 HET F A 406 1 HET F A 407 1 HET F A 408 1 HET F A 409 1 HET F A 410 1 HET F A 411 1 HET IHP A 201 72 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM F FLUORIDE ION HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 2 MG 4(MG 2+) FORMUL 6 CL CL 1- FORMUL 7 F 10(F 1-) FORMUL 17 IHP C6 H18 O24 P6 FORMUL 18 HOH *146(H2 O) HELIX 1 1 GLU A 58 GLY A 72 1 15 HELIX 2 2 TRP A 107 GLY A 114 1 8 HELIX 3 3 ILE A 122 GLN A 130 1 9 HELIX 4 4 LYS A 133 TYR A 139 1 7 SHEET 1 A 4 GLY A 50 GLY A 52 0 SHEET 2 A 4 LYS A 18 PHE A 26 -1 N ALA A 21 O GLY A 51 SHEET 3 A 4 HIS A 91 VAL A 103 1 O ARG A 92 N LYS A 18 SHEET 4 A 4 VAL A 73 ASN A 86 -1 N GLY A 78 O VAL A 97 SHEET 1 B 3 TRP A 46 ILE A 47 0 SHEET 2 B 3 GLU A 33 SER A 38 -1 N VAL A 37 O ILE A 47 SHEET 3 B 3 ARG A 117 LYS A 121 -1 O PHE A 120 N VAL A 34 LINK O GLY A 50 MG MG A 302 1555 1555 2.10 LINK OE1 GLU A 66 MG MG A 301 1555 1555 2.06 LINK OE2 GLU A 66 MG MG A 304 1555 1555 1.99 LINK OE2 GLU A 70 MG MG A 301 1555 1555 2.16 LINK OE2 GLU A 70 MG MG A 302 1555 1555 2.18 LINK O24AIHP A 201 MG MG A 302 1555 1555 1.97 LINK O35BIHP A 201 MG MG A 302 1555 1555 2.17 LINK O24BIHP A 201 MG MG A 302 1555 1555 2.33 LINK O35AIHP A 201 MG MG A 302 1555 1555 2.00 LINK MG MG A 303 O HOH A 836 1555 1555 2.04 SITE 1 AC1 10 GLU A 66 GLU A 70 IHP A 201 MG A 302 SITE 2 AC1 10 MG A 303 MG A 304 F A 403 F A 405 SITE 3 AC1 10 F A 409 F A 410 SITE 1 AC2 9 GLY A 50 GLY A 51 GLU A 70 IHP A 201 SITE 2 AC2 9 MG A 301 MG A 303 F A 402 F A 403 SITE 3 AC2 9 F A 410 SITE 1 AC3 11 IHP A 201 MG A 301 MG A 302 MG A 304 SITE 2 AC3 11 F A 403 F A 404 F A 406 F A 409 SITE 3 AC3 11 F A 410 HOH A 836 HOH A 837 SITE 1 AC4 8 GLU A 66 MG A 301 MG A 303 F A 404 SITE 2 AC4 8 F A 406 F A 407 F A 408 F A 409 SITE 1 AC5 6 SER A 28 SER A 30 GLU A 31 GLU A 32 SITE 2 AC5 6 GLU A 33 HOH A 846 SITE 1 AC6 6 ILE A 47 GLY A 50 GLU A 70 IHP A 201 SITE 2 AC6 6 MG A 302 HOH A 566 SITE 1 AC7 12 GLY A 50 GLY A 51 GLU A 66 GLU A 70 SITE 2 AC7 12 IHP A 201 MG A 301 MG A 302 MG A 303 SITE 3 AC7 12 F A 404 F A 409 F A 410 HOH A 837 SITE 1 AC8 12 GLY A 51 GLY A 52 GLU A 66 IHP A 201 SITE 2 AC8 12 MG A 303 MG A 304 F A 403 F A 406 SITE 3 AC8 12 F A 407 F A 409 HOH A 821 HOH A 836 SITE 1 AC9 7 GLU A 66 GLU A 69 GLU A 70 MG A 301 SITE 2 AC9 7 F A 409 F A 410 HOH A 725 SITE 1 BC1 7 MG A 303 MG A 304 F A 404 F A 407 SITE 2 BC1 7 F A 408 F A 409 HOH A 836 SITE 1 BC2 8 GLY A 52 ARG A 65 GLU A 66 MG A 304 SITE 2 BC2 8 F A 404 F A 406 F A 408 HOH A 637 SITE 1 BC3 8 ARG A 65 GLU A 66 GLU A 69 MG A 304 SITE 2 BC3 8 F A 406 F A 407 F A 409 HOH A 824 SITE 1 BC4 11 GLU A 66 MG A 301 MG A 303 MG A 304 SITE 2 BC4 11 F A 403 F A 404 F A 405 F A 406 SITE 3 BC4 11 F A 408 F A 410 HOH A 612 SITE 1 BC5 11 GLU A 70 ARG A 115 IHP A 201 MG A 301 SITE 2 BC5 11 MG A 302 MG A 303 F A 403 F A 405 SITE 3 BC5 11 F A 409 HOH A 589 HOH A 837 SITE 1 BC6 2 ASN A 86 GLN A 136 SITE 1 BC7 29 ARG A 10 LYS A 18 ARG A 20 SER A 39 SITE 2 BC7 29 SER A 40 ARG A 41 ILE A 47 GLY A 50 SITE 3 BC7 29 GLY A 51 GLY A 52 GLU A 70 ARG A 89 SITE 4 BC7 29 HIS A 91 ARG A 115 LYS A 133 MG A 301 SITE 5 BC7 29 MG A 302 MG A 303 F A 402 F A 403 SITE 6 BC7 29 F A 404 F A 410 HOH A 602 HOH A 606 SITE 7 BC7 29 HOH A 738 HOH A 803 HOH A 821 HOH A 836 SITE 8 BC7 29 HOH A 837 CRYST1 45.193 59.444 62.547 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015988 0.00000