HEADER VIRUS 14-JUN-07 2QA0 TITLE STRUCTURE OF ADENO-ASSOCIATED VIRUS SEROTYPE 8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS - 8; SOURCE 3 ORGANISM_TAXID: 202813; SOURCE 4 STRAIN: SEROTYPE 8; SOURCE 5 GENE: VP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS BETA-BARREL, ICOSAHEDRAL VIRUS, VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR H.-J.NAM REVDAT 3 30-AUG-23 2QA0 1 REMARK LINK REVDAT 2 24-FEB-09 2QA0 1 VERSN REVDAT 1 08-APR-08 2QA0 0 JRNL AUTH H.J.NAM,M.D.LANE,E.PADRON,B.GURDA,R.MCKENNA,E.KOHLBRENNER, JRNL AUTH 2 G.ASLANIDI,B.BYRNE,N.MUZYCZKA,S.ZOLOTUKHIN, JRNL AUTH 3 M.AGBANDJE-MCKENNA JRNL TITL STRUCTURE OF ADENO-ASSOCIATED VIRUS SEROTYPE 8, A GENE JRNL TITL 2 THERAPY VECTOR. JRNL REF J.VIROL. V. 81 12260 2007 JRNL REFN ISSN 0022-538X JRNL PMID 17728238 JRNL DOI 10.1128/JVI.01304-07 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 78.1 REMARK 3 NUMBER OF REFLECTIONS : 202050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHTOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 9940 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4136 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.91000 REMARK 3 B22 (A**2) : 7.91000 REMARK 3 B33 (A**2) : -15.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.49 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 1.540 REMARK 3 BOND ANGLES (DEGREES) : 0.007 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.150 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000043336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : CHESS; APS REMARK 200 BEAMLINE : F1; 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9175; 0.9764 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; MARMOSAIC 300 MM REMARK 200 CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 202494 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.2 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33800 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1LP3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M NACL, 4% PEG 8000, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 222.71500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 222.71500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 222.71500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 222.71500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 222.71500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 222.71500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.563660 0.755762 0.333333 74.07677 REMARK 350 BIOMT2 2 -0.755762 0.309017 0.577349 -18.82507 REMARK 350 BIOMT3 2 0.333333 -0.577349 0.745357 -56.58949 REMARK 350 BIOMT1 3 -0.142352 0.467087 0.872678 82.74048 REMARK 350 BIOMT2 3 -0.467087 -0.809017 0.356822 -113.29864 REMARK 350 BIOMT3 3 0.872677 -0.356822 0.333335 -63.20797 REMARK 350 BIOMT1 4 -0.142352 -0.467087 0.872678 14.01818 REMARK 350 BIOMT2 4 0.467087 -0.809017 -0.356822 -152.86146 REMARK 350 BIOMT3 4 0.872678 0.356822 0.333335 -10.70891 REMARK 350 BIOMT1 5 0.563660 -0.755762 0.333333 -37.11825 REMARK 350 BIOMT2 5 0.755762 0.309017 -0.577349 -82.83905 REMARK 350 BIOMT3 5 0.333333 0.577349 0.745357 28.35576 REMARK 350 BIOMT1 6 -0.936340 0.110264 0.333332 217.72095 REMARK 350 BIOMT2 6 0.110263 -0.809017 0.577350 -211.42212 REMARK 350 BIOMT3 6 0.333332 0.577350 0.745357 28.35602 REMARK 350 BIOMT1 7 -0.500000 -0.866025 -0.000002 127.42115 REMARK 350 BIOMT2 7 0.866025 -0.500000 0.000001 -220.69633 REMARK 350 BIOMT3 7 -0.000002 -0.000001 1.000000 0.00013 REMARK 350 BIOMT1 8 0.372678 -0.645497 -0.666667 106.68584 REMARK 350 BIOMT2 8 0.866025 0.500000 0.000001 -147.13148 REMARK 350 BIOMT3 8 0.333333 -0.577351 0.745356 -56.58946 REMARK 350 BIOMT1 9 0.475684 0.467087 -0.745356 184.17051 REMARK 350 BIOMT2 9 0.110264 0.809017 0.577350 -92.39170 REMARK 350 BIOMT3 9 0.872678 -0.356822 0.333333 -63.20786 REMARK 350 BIOMT1 10 -0.333334 0.934172 -0.127323 252.79399 REMARK 350 BIOMT2 10 -0.356823 0.000000 0.934172 -132.12550 REMARK 350 BIOMT3 10 0.872677 0.356823 0.333334 -10.70867 REMARK 350 BIOMT1 11 0.500000 -0.866025 0.000002 0.00081 REMARK 350 BIOMT2 11 -0.866025 -0.500000 -0.000001 0.00179 REMARK 350 BIOMT3 11 0.000002 -0.000001 -1.000000 222.71473 REMARK 350 BIOMT1 12 0.936340 0.110263 -0.333332 53.34209 REMARK 350 BIOMT2 12 -0.110264 -0.809017 -0.577350 -54.73799 REMARK 350 BIOMT3 12 -0.333332 0.577350 -0.745357 279.30435 REMARK 350 BIOMT1 13 0.333334 0.934172 0.127323 139.49045 REMARK 350 BIOMT2 13 0.356823 0.000000 -0.934172 -15.00419 REMARK 350 BIOMT3 13 -0.872677 0.356823 -0.333334 285.92292 REMARK 350 BIOMT1 14 -0.475684 0.467087 0.745356 139.39179 REMARK 350 BIOMT2 14 -0.110263 0.809017 -0.577350 64.29243 REMARK 350 BIOMT3 14 -0.872678 -0.356822 -0.333333 233.42380 REMARK 350 BIOMT1 15 -0.372678 -0.645497 0.666667 53.18245 REMARK 350 BIOMT2 15 -0.866025 0.500000 -0.000001 73.56664 REMARK 350 BIOMT3 15 -0.333333 -0.577351 -0.745356 194.35899 REMARK 350 BIOMT1 16 -0.563660 0.755762 -0.333333 291.95825 REMARK 350 BIOMT2 16 0.755762 0.309017 -0.577349 -82.83905 REMARK 350 BIOMT3 16 -0.333333 -0.577349 -0.745357 194.35923 REMARK 350 BIOMT1 17 -1.000000 0.000000 0.000000 254.84001 REMARK 350 BIOMT2 17 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 222.71499 REMARK 350 BIOMT1 18 -0.563660 -0.755762 -0.333333 180.76324 REMARK 350 BIOMT2 18 -0.755762 0.309017 0.577349 -18.82507 REMARK 350 BIOMT3 18 -0.333333 0.577349 -0.745357 279.30448 REMARK 350 BIOMT1 19 0.142352 -0.467087 -0.872678 172.09953 REMARK 350 BIOMT2 19 -0.467087 -0.809017 0.356822 -113.29864 REMARK 350 BIOMT3 19 -0.872677 0.356822 -0.333335 285.92296 REMARK 350 BIOMT1 20 0.142352 0.467087 -0.872678 240.82182 REMARK 350 BIOMT2 20 0.467087 -0.809017 -0.356822 -152.86146 REMARK 350 BIOMT3 20 -0.872677 -0.356822 -0.333335 233.42390 REMARK 350 BIOMT1 21 0.642349 0.755762 0.127323 86.99097 REMARK 350 BIOMT2 21 0.178410 -0.309017 0.934173 -223.05776 REMARK 350 BIOMT3 21 0.745357 -0.577349 -0.333332 11.03054 REMARK 350 BIOMT1 22 -0.166668 0.645497 0.745356 113.14173 REMARK 350 BIOMT2 22 0.645497 -0.500000 0.577351 -256.88880 REMARK 350 BIOMT3 22 0.745356 0.577351 -0.333332 95.97594 REMARK 350 BIOMT1 23 -0.333334 -0.356823 0.872677 46.46464 REMARK 350 BIOMT2 23 0.934172 0.000000 0.356823 -232.33196 REMARK 350 BIOMT3 23 -0.127323 0.934172 0.333334 159.18392 REMARK 350 BIOMT1 24 0.372678 -0.866025 0.333333 -20.89482 REMARK 350 BIOMT2 24 0.645497 0.500000 0.577351 -183.32396 REMARK 350 BIOMT3 24 -0.666667 -0.000001 0.745356 113.30321 REMARK 350 BIOMT1 25 0.975684 -0.178410 -0.127321 4.15183 REMARK 350 BIOMT2 25 0.178410 0.309017 0.934173 -177.59218 REMARK 350 BIOMT3 25 -0.127321 -0.934173 0.333333 21.73939 REMARK 350 BIOMT1 26 -0.475684 -0.467087 0.745356 70.66949 REMARK 350 BIOMT2 26 0.110264 0.809017 0.577350 -92.39170 REMARK 350 BIOMT3 26 -0.872678 0.356822 -0.333333 285.92285 REMARK 350 BIOMT1 27 0.333334 -0.934172 0.127323 2.04602 REMARK 350 BIOMT2 27 -0.356823 0.000000 0.934172 -132.12550 REMARK 350 BIOMT3 27 -0.872677 -0.356823 -0.333334 233.42366 REMARK 350 BIOMT1 28 0.936340 -0.110264 -0.333332 37.11905 REMARK 350 BIOMT2 28 0.110263 -0.809017 0.577350 -211.42212 REMARK 350 BIOMT3 28 -0.333332 -0.577350 -0.745357 194.35897 REMARK 350 BIOMT1 29 0.500000 0.866025 0.000002 127.41885 REMARK 350 BIOMT2 29 0.866025 -0.500000 0.000001 -220.69632 REMARK 350 BIOMT3 29 0.000002 0.000001 -1.000000 222.71486 REMARK 350 BIOMT1 30 -0.372678 0.645497 0.666667 148.15416 REMARK 350 BIOMT2 30 0.866025 0.500000 0.000001 -147.13148 REMARK 350 BIOMT3 30 -0.333333 0.577351 -0.745356 279.30445 REMARK 350 BIOMT1 31 -0.333334 -0.934172 -0.127323 115.34955 REMARK 350 BIOMT2 31 0.356823 0.000000 -0.934172 -15.00419 REMARK 350 BIOMT3 31 0.872677 -0.356823 0.333334 -63.20793 REMARK 350 BIOMT1 32 0.475684 -0.467087 -0.745356 115.44822 REMARK 350 BIOMT2 32 -0.110263 0.809017 -0.577350 64.29243 REMARK 350 BIOMT3 32 0.872678 0.356822 0.333333 -10.70881 REMARK 350 BIOMT1 33 0.372678 0.645497 -0.666667 201.65756 REMARK 350 BIOMT2 33 -0.866025 0.500000 -0.000001 73.56664 REMARK 350 BIOMT3 33 0.333333 0.577351 0.745356 28.35600 REMARK 350 BIOMT1 34 -0.500000 0.866025 -0.000002 254.83920 REMARK 350 BIOMT2 34 -0.866025 -0.500000 -0.000001 0.00179 REMARK 350 BIOMT3 34 -0.000002 0.000001 1.000000 0.00026 REMARK 350 BIOMT1 35 -0.936340 -0.110264 0.333332 201.49792 REMARK 350 BIOMT2 35 -0.110263 -0.809017 -0.577350 -54.73799 REMARK 350 BIOMT3 35 0.333332 -0.577350 0.745357 -56.58936 REMARK 350 BIOMT1 36 0.166668 0.645497 -0.745356 236.66999 REMARK 350 BIOMT2 36 -0.645497 -0.500000 -0.577351 36.19427 REMARK 350 BIOMT3 36 -0.745356 0.577351 0.333332 211.68452 REMARK 350 BIOMT1 37 -0.642349 0.755762 -0.127323 279.04405 REMARK 350 BIOMT2 37 -0.178410 -0.309017 -0.934173 30.46250 REMARK 350 BIOMT3 37 -0.745357 -0.577349 0.333332 126.73920 REMARK 350 BIOMT1 38 -0.975684 -0.178410 0.127321 224.43876 REMARK 350 BIOMT2 38 -0.178410 0.309017 -0.934173 75.92807 REMARK 350 BIOMT3 38 0.127321 -0.934173 -0.333333 63.53109 REMARK 350 BIOMT1 39 -0.372678 -0.866025 -0.333333 148.31678 REMARK 350 BIOMT2 39 -0.645497 0.500000 -0.577351 109.75911 REMARK 350 BIOMT3 39 0.666667 -0.000001 -0.745356 109.41165 REMARK 350 BIOMT1 40 0.333334 -0.356823 -0.872677 155.87610 REMARK 350 BIOMT2 40 -0.934172 0.000000 -0.356823 85.20227 REMARK 350 BIOMT3 40 0.127323 0.934172 -0.333334 200.97550 REMARK 350 BIOMT1 41 0.642349 0.178410 0.745357 -24.30454 REMARK 350 BIOMT2 41 0.755762 -0.309017 -0.577349 -128.30462 REMARK 350 BIOMT3 41 0.127323 0.934173 -0.333332 200.97532 REMARK 350 BIOMT1 42 0.475684 0.110264 0.872678 -22.25933 REMARK 350 BIOMT2 42 0.467087 0.809017 -0.356822 -33.83104 REMARK 350 BIOMT3 42 -0.745356 0.577350 0.333333 211.68425 REMARK 350 BIOMT1 43 0.475684 -0.110264 0.872678 -38.48236 REMARK 350 BIOMT2 43 -0.467087 0.809017 0.356822 5.73177 REMARK 350 BIOMT3 43 -0.745356 -0.577350 0.333333 126.73887 REMARK 350 BIOMT1 44 0.642349 -0.178410 0.745357 -50.55396 REMARK 350 BIOMT2 44 -0.755762 -0.309017 0.577349 -64.29064 REMARK 350 BIOMT3 44 0.127323 -0.934173 -0.333332 63.53080 REMARK 350 BIOMT1 45 0.745355 0.000000 0.666668 -41.79159 REMARK 350 BIOMT2 45 0.000000 -1.000000 0.000000 -147.12969 REMARK 350 BIOMT3 45 0.666668 0.000000 -0.745355 109.41145 REMARK 350 BIOMT1 46 -0.333334 0.356823 0.872677 98.96391 REMARK 350 BIOMT2 46 -0.934172 0.000000 -0.356823 85.20227 REMARK 350 BIOMT3 46 -0.127323 -0.934172 0.333334 21.73949 REMARK 350 BIOMT1 47 -0.166668 -0.645497 0.745356 18.17001 REMARK 350 BIOMT2 47 -0.645497 -0.500000 -0.577351 36.19427 REMARK 350 BIOMT3 47 0.745356 -0.577351 -0.333332 11.03047 REMARK 350 BIOMT1 48 0.642349 -0.755762 0.127323 -24.20404 REMARK 350 BIOMT2 48 -0.178410 -0.309017 -0.934173 30.46250 REMARK 350 BIOMT3 48 0.745357 0.577349 -0.333332 95.97579 REMARK 350 BIOMT1 49 0.975684 0.178410 -0.127321 30.40125 REMARK 350 BIOMT2 49 -0.178410 0.309017 -0.934173 75.92807 REMARK 350 BIOMT3 49 -0.127321 0.934173 0.333333 159.18390 REMARK 350 BIOMT1 50 0.372678 0.866025 0.333333 106.52323 REMARK 350 BIOMT2 50 -0.645497 0.500000 -0.577351 109.75911 REMARK 350 BIOMT3 50 -0.666667 0.000001 0.745356 113.30334 REMARK 350 BIOMT1 51 0.166668 -0.645497 -0.745356 141.69828 REMARK 350 BIOMT2 51 0.645497 -0.500000 0.577351 -256.88880 REMARK 350 BIOMT3 51 -0.745356 -0.577351 0.333332 126.73905 REMARK 350 BIOMT1 52 0.333334 0.356823 -0.872677 208.37536 REMARK 350 BIOMT2 52 0.934172 0.000000 0.356823 -232.33196 REMARK 350 BIOMT3 52 0.127323 -0.934172 -0.333334 63.53107 REMARK 350 BIOMT1 53 -0.372678 0.866025 -0.333333 275.73482 REMARK 350 BIOMT2 53 0.645497 0.500000 0.577351 -183.32396 REMARK 350 BIOMT3 53 0.666667 0.000001 -0.745356 109.41178 REMARK 350 BIOMT1 54 -0.975684 0.178410 0.127321 250.68817 REMARK 350 BIOMT2 54 0.178410 0.309017 0.934173 -177.59219 REMARK 350 BIOMT3 54 0.127321 0.934173 -0.333333 200.97560 REMARK 350 BIOMT1 55 -0.642349 -0.755762 -0.127323 167.84903 REMARK 350 BIOMT2 55 0.178410 -0.309017 0.934173 -223.05776 REMARK 350 BIOMT3 55 -0.745357 0.577349 0.333332 211.68445 REMARK 350 BIOMT1 56 -0.475684 0.110264 -0.872678 293.32237 REMARK 350 BIOMT2 56 -0.467087 0.809017 0.356822 5.73177 REMARK 350 BIOMT3 56 0.745356 0.577350 -0.333333 95.97612 REMARK 350 BIOMT1 57 -0.642349 0.178410 -0.745357 305.39397 REMARK 350 BIOMT2 57 -0.755762 -0.309017 0.577349 -64.29064 REMARK 350 BIOMT3 57 -0.127323 0.934173 0.333332 159.18419 REMARK 350 BIOMT1 58 -0.745355 0.000000 -0.666668 296.63159 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 -147.12969 REMARK 350 BIOMT3 58 -0.666668 0.000000 0.745355 113.30354 REMARK 350 BIOMT1 59 -0.642349 -0.178410 -0.745357 279.14455 REMARK 350 BIOMT2 59 0.755762 -0.309017 -0.577349 -128.30462 REMARK 350 BIOMT3 59 -0.127323 -0.934173 0.333332 21.73967 REMARK 350 BIOMT1 60 -0.475684 -0.110263 -0.872678 277.09933 REMARK 350 BIOMT2 60 0.467087 0.809017 -0.356822 -33.83104 REMARK 350 BIOMT3 60 0.745356 -0.577350 -0.333333 11.03074 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 633 31.94 -57.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 DBREF 2QA0 A 220 738 UNP Q8JQF8 Q8JQF8_9VIRU 220 738 SEQRES 1 A 519 ASP GLY VAL GLY SER SER SER GLY ASN TRP HIS CYS ASP SEQRES 2 A 519 SER THR TRP LEU GLY ASP ARG VAL ILE THR THR SER THR SEQRES 3 A 519 ARG THR TRP ALA LEU PRO THR TYR ASN ASN HIS LEU TYR SEQRES 4 A 519 LYS GLN ILE SER ASN GLY THR SER GLY GLY ALA THR ASN SEQRES 5 A 519 ASP ASN THR TYR PHE GLY TYR SER THR PRO TRP GLY TYR SEQRES 6 A 519 PHE ASP PHE ASN ARG PHE HIS CYS HIS PHE SER PRO ARG SEQRES 7 A 519 ASP TRP GLN ARG LEU ILE ASN ASN ASN TRP GLY PHE ARG SEQRES 8 A 519 PRO LYS ARG LEU SER PHE LYS LEU PHE ASN ILE GLN VAL SEQRES 9 A 519 LYS GLU VAL THR GLN ASN GLU GLY THR LYS THR ILE ALA SEQRES 10 A 519 ASN ASN LEU THR SER THR ILE GLN VAL PHE THR ASP SER SEQRES 11 A 519 GLU TYR GLN LEU PRO TYR VAL LEU GLY SER ALA HIS GLN SEQRES 12 A 519 GLY CYS LEU PRO PRO PHE PRO ALA ASP VAL PHE MET ILE SEQRES 13 A 519 PRO GLN TYR GLY TYR LEU THR LEU ASN ASN GLY SER GLN SEQRES 14 A 519 ALA VAL GLY ARG SER SER PHE TYR CYS LEU GLU TYR PHE SEQRES 15 A 519 PRO SER GLN MET LEU ARG THR GLY ASN ASN PHE GLN PHE SEQRES 16 A 519 THR TYR THR PHE GLU ASP VAL PRO PHE HIS SER SER TYR SEQRES 17 A 519 ALA HIS SER GLN SER LEU ASP ARG LEU MET ASN PRO LEU SEQRES 18 A 519 ILE ASP GLN TYR LEU TYR TYR LEU SER ARG THR GLN THR SEQRES 19 A 519 THR GLY GLY THR ALA ASN THR GLN THR LEU GLY PHE SER SEQRES 20 A 519 GLN GLY GLY PRO ASN THR MET ALA ASN GLN ALA LYS ASN SEQRES 21 A 519 TRP LEU PRO GLY PRO CYS TYR ARG GLN GLN ARG VAL SER SEQRES 22 A 519 THR THR THR GLY GLN ASN ASN ASN SER ASN PHE ALA TRP SEQRES 23 A 519 THR ALA GLY THR LYS TYR HIS LEU ASN GLY ARG ASN SER SEQRES 24 A 519 LEU ALA ASN PRO GLY ILE ALA MET ALA THR HIS LYS ASP SEQRES 25 A 519 ASP GLU GLU ARG PHE PHE PRO SER ASN GLY ILE LEU ILE SEQRES 26 A 519 PHE GLY LYS GLN ASN ALA ALA ARG ASP ASN ALA ASP TYR SEQRES 27 A 519 SER ASP VAL MET LEU THR SER GLU GLU GLU ILE LYS THR SEQRES 28 A 519 THR ASN PRO VAL ALA THR GLU GLU TYR GLY ILE VAL ALA SEQRES 29 A 519 ASP ASN LEU GLN GLN GLN ASN THR ALA PRO GLN ILE GLY SEQRES 30 A 519 THR VAL ASN SER GLN GLY ALA LEU PRO GLY MET VAL TRP SEQRES 31 A 519 GLN ASN ARG ASP VAL TYR LEU GLN GLY PRO ILE TRP ALA SEQRES 32 A 519 LYS ILE PRO HIS THR ASP GLY ASN PHE HIS PRO SER PRO SEQRES 33 A 519 LEU MET GLY GLY PHE GLY LEU LYS HIS PRO PRO PRO GLN SEQRES 34 A 519 ILE LEU ILE LYS ASN THR PRO VAL PRO ALA ASP PRO PRO SEQRES 35 A 519 THR THR PHE ASN GLN SER LYS LEU ASN SER PHE ILE THR SEQRES 36 A 519 GLN TYR SER THR GLY GLN VAL SER VAL GLU ILE GLU TRP SEQRES 37 A 519 GLU LEU GLN LYS GLU ASN SER LYS ARG TRP ASN PRO GLU SEQRES 38 A 519 ILE GLN TYR THR SER ASN TYR TYR LYS SER THR SER VAL SEQRES 39 A 519 ASP PHE ALA VAL ASN THR GLU GLY VAL TYR SER GLU PRO SEQRES 40 A 519 ARG PRO ILE GLY THR ARG TYR LEU THR ARG ASN LEU HET NA A 1 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *89(H2 O) HELIX 1 1 TYR A 253 LEU A 257 5 5 HELIX 2 2 THR A 270 THR A 274 5 5 HELIX 3 3 ARG A 289 HIS A 293 5 5 HELIX 4 4 SER A 295 ASN A 305 1 11 HELIX 5 5 CYS A 397 PHE A 401 5 5 HELIX 6 6 THR A 494 ASN A 498 5 5 HELIX 7 7 ASP A 556 SER A 558 5 3 HELIX 8 8 GLU A 565 THR A 571 5 7 SHEET 1 A 5 ASP A 232 TRP A 235 0 SHEET 2 A 5 ARG A 239 LEU A 250 -1 O ILE A 241 N THR A 234 SHEET 3 A 5 GLN A 675 LYS A 691 -1 O TRP A 687 N VAL A 240 SHEET 4 A 5 ASN A 306 ASN A 329 -1 N LYS A 324 O TYR A 676 SHEET 5 A 5 PHE A 373 MET A 374 0 SHEET 1 B 5 THR A 332 ASN A 337 0 SHEET 2 B 5 ASN A 306 ASN A 329 -1 N GLU A 325 O ALA A 336 SHEET 3 B 5 GLN A 675 LYS A 691 -1 O TYR A 676 N LYS A 324 SHEET 4 B 5 ARG A 239 LEU A 250 -1 N VAL A 240 O TRP A 687 SHEET 5 B 5 PHE A 412 THR A 417 0 SHEET 1 C 3 LYS A 259 ASN A 263 0 SHEET 2 C 3 TYR A 275 PHE A 285 -1 O GLY A 277 N ILE A 261 SHEET 3 C 3 GLN A 377 THR A 382 -1 O TYR A 378 N TRP A 282 SHEET 1 D 5 LYS A 259 ASN A 263 0 SHEET 2 D 5 TYR A 275 PHE A 285 -1 O GLY A 277 N ILE A 261 SHEET 3 D 5 ILE A 649 ASN A 653 -1 O ILE A 651 N GLY A 283 SHEET 4 D 5 ILE A 343 THR A 347 -1 N GLN A 344 O LYS A 652 SHEET 5 D 5 GLN A 404 LEU A 406 -1 O GLN A 404 N VAL A 345 SHEET 1 E 2 ALA A 428 HIS A 429 0 SHEET 2 E 2 THR A 735 ARG A 736 1 O ARG A 736 N ALA A 428 SHEET 1 F 2 TYR A 446 GLN A 452 0 SHEET 2 F 2 GLN A 461 GLN A 467 -1 O GLY A 464 N SER A 449 SHEET 1 G 2 LEU A 481 PRO A 482 0 SHEET 2 G 2 MET A 607 VAL A 608 1 O VAL A 608 N LEU A 481 SHEET 1 H 2 CYS A 485 TYR A 486 0 SHEET 2 H 2 SER A 600 GLN A 601 -1 O GLN A 601 N CYS A 485 SHEET 1 I 2 ARG A 490 SER A 492 0 SHEET 2 I 2 PHE A 536 PRO A 538 -1 O PHE A 537 N VAL A 491 SHEET 1 J 2 LYS A 510 LEU A 513 0 SHEET 2 J 2 ARG A 516 LEU A 519 -1 O ARG A 516 N LEU A 513 SHEET 1 K 2 ILE A 544 GLY A 546 0 SHEET 2 K 2 VAL A 560 LEU A 562 -1 O MET A 561 N PHE A 545 SHEET 1 L 2 GLY A 580 ALA A 583 0 SHEET 2 L 2 ILE A 595 VAL A 598 -1 O GLY A 596 N VAL A 582 SHEET 1 M 2 TRP A 621 LYS A 623 0 SHEET 2 M 2 PHE A 640 LEU A 642 1 O LEU A 642 N ALA A 622 LINK NA NA A 1 OH TYR A 703 1555 1555 2.99 CISPEP 1 ASN A 521 PRO A 522 0 0.86 SITE 1 AC1 3 TYR A 703 SER A 705 ASP A 714 CRYST1 254.840 254.840 445.430 90.00 90.00 120.00 P 63 2 2 120 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003924 0.002266 0.000000 0.00000 SCALE2 0.000000 0.004531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002245 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.563660 0.755762 0.333333 74.07677 MTRIX2 2 -0.755762 0.309017 0.577349 -18.82507 MTRIX3 2 0.333333 -0.577349 0.745357 -56.58949 MTRIX1 3 -0.142352 0.467087 0.872678 82.74048 MTRIX2 3 -0.467087 -0.809017 0.356822 -113.29864 MTRIX3 3 0.872678 -0.356822 0.333335 -63.20797 MTRIX1 4 -0.142352 -0.467087 0.872678 14.01818 MTRIX2 4 0.467087 -0.809017 -0.356822 -152.86146 MTRIX3 4 0.872678 0.356822 0.333335 -10.70891 MTRIX1 5 0.563660 -0.755762 0.333333 -37.11825 MTRIX2 5 0.755762 0.309017 -0.577349 -82.83905 MTRIX3 5 0.333333 0.577349 0.745357 28.35576 MTRIX1 6 0.642349 0.755762 0.127323 86.99097 MTRIX2 6 0.178410 -0.309017 0.934173 -223.05776 MTRIX3 6 0.745357 -0.577349 -0.333332 11.03054 MTRIX1 7 -0.166668 0.645497 0.745356 113.14173 MTRIX2 7 0.645497 -0.500000 0.577351 -256.88880 MTRIX3 7 0.745356 0.577351 -0.333332 95.97594 MTRIX1 8 -0.333334 -0.356823 0.872677 46.46464 MTRIX2 8 0.934172 0.000000 0.356823 -232.33196 MTRIX3 8 -0.127323 0.934172 0.333334 159.18392 MTRIX1 9 0.372678 -0.866025 0.333333 -20.89482 MTRIX2 9 0.645497 0.500000 0.577351 -183.32396 MTRIX3 9 -0.666667 -0.000001 0.745356 113.30321 MTRIX1 10 0.975684 -0.178410 -0.127321 4.15183 MTRIX2 10 0.178410 0.309017 0.934173 -177.59218 MTRIX3 10 -0.127321 -0.934173 0.333333 21.73939