HEADER OXIDOREDUCTASE 14-JUN-07 2QA2 TITLE CRYSTAL STRUCTURE OF CABE, AN AROMATIC HYDROXYLASE FROM ANGUCYCLINE TITLE 2 BIOSYNTHESIS, DETERMINED TO 2.7 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE OXYGENASE CABE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CABE; AROMATIC HYDROXYLASE; COMPND 5 EC: 1.14.13.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES; SOURCE 3 ORGANISM_TAXID: 1883; SOURCE 4 STRAIN: SP. H021; SOURCE 5 GENE: CABE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBHB KEYWDS FAD, ANGUCYCLINE, POLYKETIDE, AROMATIC HYDROXYLASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.KOSKINIEMI,D.DOBRITZSCH,M.METSA-KETELA,P.KALLIO,J.NIEMI,G.SCHNEIDER REVDAT 5 30-AUG-23 2QA2 1 REMARK REVDAT 4 13-JUL-11 2QA2 1 VERSN REVDAT 3 24-FEB-09 2QA2 1 VERSN REVDAT 2 20-NOV-07 2QA2 1 JRNL REVDAT 1 14-AUG-07 2QA2 0 JRNL AUTH H.KOSKINIEMI,M.METSA-KETELA,D.DOBRITZSCH,P.KALLIO, JRNL AUTH 2 H.KORHONEN,P.MANTSALA,G.SCHNEIDER,J.NIEMI JRNL TITL CRYSTAL STRUCTURES OF TWO AROMATIC HYDROXYLASES INVOLVED IN JRNL TITL 2 THE EARLY TAILORING STEPS OF ANGUCYCLINE BIOSYNTHESIS JRNL REF J.MOL.BIOL. V. 372 633 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17669423 JRNL DOI 10.1016/J.JMB.2007.06.087 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1220 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1671 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3770 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3675 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 50.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.71000 REMARK 3 B22 (A**2) : -2.71000 REMARK 3 B33 (A**2) : 4.06000 REMARK 3 B12 (A**2) : -1.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.437 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.320 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.281 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3816 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5199 ; 1.403 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 490 ; 6.596 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;34.661 ;22.156 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 579 ;20.136 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;18.525 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 568 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2964 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1752 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2542 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 146 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.238 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2474 ; 0.768 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3864 ; 1.321 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1541 ; 1.034 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1334 ; 1.607 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 172 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 RESIDUE RANGE : A 255 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): -33.3580 -23.6600 11.5210 REMARK 3 T TENSOR REMARK 3 T11: -0.1733 T22: -0.6230 REMARK 3 T33: -0.4498 T12: -0.0247 REMARK 3 T13: 0.1976 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 2.9803 L22: 8.0094 REMARK 3 L33: 2.4029 L12: 2.5301 REMARK 3 L13: -0.6501 L23: -2.2875 REMARK 3 S TENSOR REMARK 3 S11: 0.0855 S12: -0.1096 S13: -0.3074 REMARK 3 S21: 0.7022 S22: -0.1348 S23: 0.2396 REMARK 3 S31: 0.1257 S32: 0.0295 S33: 0.0493 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2760 -4.5900 19.9670 REMARK 3 T TENSOR REMARK 3 T11: 0.5219 T22: -0.0286 REMARK 3 T33: -0.1462 T12: -0.4214 REMARK 3 T13: 0.1948 T23: -0.1157 REMARK 3 L TENSOR REMARK 3 L11: 9.8470 L22: 7.5233 REMARK 3 L33: 9.9929 L12: 2.1725 REMARK 3 L13: 2.1128 L23: 1.3141 REMARK 3 S TENSOR REMARK 3 S11: -0.3631 S12: -0.0276 S13: -0.5777 REMARK 3 S21: 0.5800 S22: -0.1833 S23: -0.0911 REMARK 3 S31: -0.6947 S32: 0.0388 S33: 0.5465 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 374 A 489 REMARK 3 ORIGIN FOR THE GROUP (A): -58.6120 -28.2810 8.9130 REMARK 3 T TENSOR REMARK 3 T11: -0.0504 T22: -0.2145 REMARK 3 T33: 0.6499 T12: -0.1128 REMARK 3 T13: 0.1833 T23: 0.2234 REMARK 3 L TENSOR REMARK 3 L11: 6.2685 L22: 6.2075 REMARK 3 L33: 5.4308 L12: 1.1405 REMARK 3 L13: -1.0807 L23: 1.3866 REMARK 3 S TENSOR REMARK 3 S11: -0.1134 S12: 0.8014 S13: 0.3971 REMARK 3 S21: -0.2543 S22: 0.2326 S23: 1.6866 REMARK 3 S31: 0.1931 S32: -0.9792 S33: -0.1191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE ANALYSIS OF THE INTENSITY DISTRIBUTION SUGGESTS POSSIBLE REMARK 3 TWINNING. REFINEMENT USING THE TWIN PROTOCOL DID HOWEVER NOT REMARK 3 IMPROVE REMARK 3 RFREE AND THE CRYSTALS WERE THEREFORE NOT CONSIDERED TWINNED WITH REMARK 3 SPACE GROUP P6522. FURTHERMORE, DATA PROCESSING USING PROGRAMS REMARK 3 OTHER REMARK 3 THAN XDS DID NOT SHOW SIGNS OF TWINNING. REMARK 4 REMARK 4 2QA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.84 REMARK 200 MONOCHROMATOR : SI [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24379 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 16.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.51800 REMARK 200 R SYM FOR SHELL (I) : 0.51800 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2QA1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3350, 0.1M BIS-TRIS PROPANE, REMARK 280 0.2M NA/K-PHOSPHATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.20000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.60000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.40000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.80000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 139.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 111.20000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 55.60000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.80000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.40000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 139.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER GENERATED FROM THE MONOMER REMARK 300 IN THE ASYMMETRIC UNIT BY THE OPERATION 1 0 0 0-1 0 0 0-1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ALA A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ARG A 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 92 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 38 -72.54 -38.76 REMARK 500 ARG A 42 -72.43 -53.38 REMARK 500 ARG A 155 41.22 -100.71 REMARK 500 SER A 156 120.29 -39.39 REMARK 500 ALA A 162 1.63 -69.14 REMARK 500 ARG A 188 69.05 -150.16 REMARK 500 PRO A 195 -46.95 -24.81 REMARK 500 ASP A 257 52.85 -119.18 REMARK 500 GLN A 286 -43.08 -136.83 REMARK 500 ASP A 380 132.77 178.86 REMARK 500 ALA A 399 -72.57 -44.43 REMARK 500 ASP A 421 80.42 61.98 REMARK 500 HIS A 444 -90.24 -94.92 REMARK 500 ASP A 445 61.77 -102.34 REMARK 500 PRO A 448 -19.19 -49.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 91 LYS A 92 -146.56 REMARK 500 LEU A 204 GLY A 205 119.06 REMARK 500 PRO A 447 PRO A 448 -143.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QA1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A HOMOLOGOUS ENZYME DBREF 2QA2 A -9 489 PDB 2QA2 2QA2 -9 489 SEQRES 1 A 499 MET ALA HIS HIS HIS HIS HIS HIS HIS ARG SER ASP ALA SEQRES 2 A 499 SER VAL ILE VAL VAL GLY ALA GLY PRO ALA GLY LEU MET SEQRES 3 A 499 LEU ALA GLY GLU LEU ARG LEU GLY GLY VAL ASP VAL MET SEQRES 4 A 499 VAL LEU GLU GLN LEU PRO GLN ARG THR GLY GLU SER ARG SEQRES 5 A 499 GLY LEU GLY PHE THR ALA ARG THR MET GLU VAL PHE ASP SEQRES 6 A 499 GLN ARG GLY ILE LEU PRO ALA PHE GLY PRO VAL GLU THR SEQRES 7 A 499 SER THR GLN GLY HIS PHE GLY GLY ARG PRO VAL ASP PHE SEQRES 8 A 499 GLY VAL LEU GLU GLY ALA HIS TYR GLY VAL LYS ALA VAL SEQRES 9 A 499 PRO GLN SER THR THR GLU SER VAL LEU GLU GLU TRP ALA SEQRES 10 A 499 LEU GLY ARG GLY ALA GLU LEU LEU ARG GLY HIS THR VAL SEQRES 11 A 499 ARG ALA LEU THR ASP GLU GLY ASP HIS VAL VAL VAL GLU SEQRES 12 A 499 VAL GLU GLY PRO ASP GLY PRO ARG SER LEU THR THR ARG SEQRES 13 A 499 TYR VAL VAL GLY CYS ASP GLY GLY ARG SER THR VAL ARG SEQRES 14 A 499 LYS ALA ALA GLY PHE ASP PHE PRO GLY THR SER ALA SER SEQRES 15 A 499 ARG GLU MET PHE LEU ALA ASP ILE ARG GLY CYS GLU ILE SEQRES 16 A 499 THR PRO ARG PRO ILE GLY GLU THR VAL PRO LEU GLY MET SEQRES 17 A 499 VAL MET SER ALA PRO LEU GLY ASP GLY VAL ASP ARG ILE SEQRES 18 A 499 ILE VAL CYS GLU ARG GLY ALA PRO ALA ARG ARG ARG THR SEQRES 19 A 499 GLY PRO PRO PRO TYR GLN GLU VAL ALA ALA ALA TRP GLN SEQRES 20 A 499 ARG LEU THR GLY GLN ASP ILE SER HIS GLY GLU PRO VAL SEQRES 21 A 499 TRP VAL SER ALA PHE GLY ASP PRO ALA ARG GLN VAL SER SEQRES 22 A 499 ALA TYR ARG ARG GLY ARG VAL LEU LEU ALA GLY ASP SER SEQRES 23 A 499 ALA HIS VAL HIS LEU PRO ALA GLY GLY GLN GLY MET ASN SEQRES 24 A 499 VAL SER VAL GLN ASP SER VAL ASN LEU GLY TRP LYS LEU SEQRES 25 A 499 ALA ALA VAL VAL SER GLY ARG ALA PRO ALA GLY LEU LEU SEQRES 26 A 499 ASP THR TYR HIS GLU GLU ARG HIS PRO VAL GLY ARG ARG SEQRES 27 A 499 LEU LEU MET ASN THR GLN ALA GLN GLY MET LEU PHE LEU SEQRES 28 A 499 SER GLY ASP GLU MET GLN PRO LEU ARG ASP VAL LEU SER SEQRES 29 A 499 GLU LEU ILE ARG TYR ASP GLU VAL SER ARG HIS LEU ALA SEQRES 30 A 499 GLY MET VAL SER GLY LEU ASP ILE ARG TYR GLU VAL ASP SEQRES 31 A 499 GLY GLY ASP HIS PRO LEU LEU GLY MET ARG MET PRO HIS SEQRES 32 A 499 GLN GLU LEU VAL ARG ALA HIS GLY LYS THR SER THR THR SEQRES 33 A 499 GLU LEU LEU HIS PRO ALA ARG GLY VAL LEU LEU ASP ILE SEQRES 34 A 499 ALA ASP ASP ALA GLU VAL ARG GLU ALA ALA THR GLY TRP SEQRES 35 A 499 SER ASP ARG VAL ASP ILE VAL THR ALA SER LEU HIS ASP SEQRES 36 A 499 ALA PRO PRO GLN GLY PRO LEU SER ASP ALA ARG ALA VAL SEQRES 37 A 499 LEU VAL ARG PRO ASP GLY TYR VAL ALA TRP ILE SER PRO SEQRES 38 A 499 GLY SER ARG ALA GLY LEU THR GLU ALA LEU ASP ARG TRP SEQRES 39 A 499 PHE GLY PRO ALA ARG HET FAD A 500 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *24(H2 O) HELIX 1 1 GLY A 11 GLY A 24 1 14 HELIX 2 2 THR A 47 ARG A 57 1 11 HELIX 3 3 GLY A 58 GLY A 64 5 7 HELIX 4 4 GLY A 82 LEU A 84 5 3 HELIX 5 5 GLN A 96 ARG A 110 1 15 HELIX 6 6 SER A 156 ALA A 162 1 7 HELIX 7 7 PRO A 228 GLY A 241 1 14 HELIX 8 8 GLY A 274 SER A 276 5 3 HELIX 9 9 GLN A 286 SER A 307 1 22 HELIX 10 10 ALA A 312 SER A 342 1 31 HELIX 11 11 GLY A 343 GLU A 345 5 3 HELIX 12 12 MET A 346 ARG A 358 1 13 HELIX 13 13 ASP A 360 GLY A 372 1 13 HELIX 14 14 THR A 406 HIS A 410 5 5 HELIX 15 15 ASP A 422 ALA A 429 1 8 HELIX 16 16 THR A 430 SER A 433 5 4 HELIX 17 17 GLY A 476 GLY A 486 1 11 SHEET 1 A 6 GLU A 113 ARG A 116 0 SHEET 2 A 6 VAL A 28 GLU A 32 1 N VAL A 30 O LEU A 115 SHEET 3 A 6 ALA A 3 VAL A 8 1 N VAL A 7 O MET A 29 SHEET 4 A 6 PRO A 140 GLY A 150 1 O TYR A 147 N ILE A 6 SHEET 5 A 6 VAL A 130 GLU A 135 -1 N VAL A 130 O THR A 145 SHEET 6 A 6 THR A 119 ASP A 125 -1 N THR A 124 O VAL A 131 SHEET 1 B 6 GLU A 113 ARG A 116 0 SHEET 2 B 6 VAL A 28 GLU A 32 1 N VAL A 30 O LEU A 115 SHEET 3 B 6 ALA A 3 VAL A 8 1 N VAL A 7 O MET A 29 SHEET 4 B 6 PRO A 140 GLY A 150 1 O TYR A 147 N ILE A 6 SHEET 5 B 6 VAL A 270 LEU A 272 1 O LEU A 271 N GLY A 150 SHEET 6 B 6 ARG A 266 ARG A 267 -1 N ARG A 267 O VAL A 270 SHEET 1 C 3 LEU A 44 PHE A 46 0 SHEET 2 C 3 GLY A 90 PRO A 95 -1 O VAL A 94 N GLY A 45 SHEET 3 C 3 THR A 68 SER A 69 -1 N SER A 69 O GLY A 90 SHEET 1 D 2 GLN A 71 PHE A 74 0 SHEET 2 D 2 ARG A 77 ASP A 80 -1 O VAL A 79 N GLY A 72 SHEET 1 E 3 GLY A 168 THR A 169 0 SHEET 2 E 3 ALA A 259 GLN A 261 -1 O ALA A 259 N THR A 169 SHEET 3 E 3 HIS A 278 HIS A 280 -1 O VAL A 279 N ARG A 260 SHEET 1 F 5 ARG A 188 VAL A 194 0 SHEET 2 F 5 GLY A 197 PRO A 203 -1 O SER A 201 N ARG A 188 SHEET 3 F 5 ASP A 209 GLU A 215 -1 O ILE A 212 N MET A 200 SHEET 4 F 5 MET A 175 ARG A 181 -1 N ALA A 178 O ILE A 211 SHEET 5 F 5 GLU A 248 PHE A 255 -1 O PHE A 255 N MET A 175 SHEET 1 G 3 LYS A 402 SER A 404 0 SHEET 2 G 3 GLU A 395 VAL A 397 -1 N LEU A 396 O THR A 403 SHEET 3 G 3 SER A 442 LEU A 443 -1 O SER A 442 N VAL A 397 SHEET 1 H 4 VAL A 436 THR A 440 0 SHEET 2 H 4 GLY A 414 ASP A 418 1 N GLY A 414 O ASP A 437 SHEET 3 H 4 ALA A 457 VAL A 460 -1 O VAL A 460 N VAL A 415 SHEET 4 H 4 VAL A 466 SER A 470 -1 O ALA A 467 N LEU A 459 CISPEP 1 SER A 470 PRO A 471 0 17.34 SITE 1 AC1 25 GLY A 9 GLY A 11 PRO A 12 ALA A 13 SITE 2 AC1 25 GLU A 32 GLN A 33 ARG A 42 GLY A 43 SITE 3 AC1 25 LEU A 44 GLN A 96 HIS A 118 VAL A 120 SITE 4 AC1 25 CYS A 151 ASP A 152 GLY A 153 THR A 157 SITE 5 AC1 25 GLY A 274 ASP A 275 PRO A 282 GLY A 285 SITE 6 AC1 25 GLN A 286 GLY A 287 MET A 288 ASN A 289 SITE 7 AC1 25 HOH A 514 CRYST1 133.100 133.100 166.800 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007513 0.004338 0.000000 0.00000 SCALE2 0.000000 0.008675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005995 0.00000