HEADER HYDROLASE 15-JUN-07 2QAH OBSLTE 25-JAN-12 2QAH 4D8L TITLE CRYSTAL STRUCTURE OF THE 2-PYRONE-4,6-DICARBOXYLIC ACID HYDROLASE FROM TITLE 2 SPHINGOMONAS PAUCIMOBILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-PYRONE-4,6-DICARBOXYLIC ACID HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-PYRONE-4,6-DICARBOXYLATE HYDROLASE; COMPND 5 EC: 3.1.1.57; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 STRAIN: SYK-6; SOURCE 5 GENE: LIGI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS 2-PYRONE-4,6-DICARBOXYLIC ACID HYDROLASE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,J.BONANNO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW AUTHOR 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 3 25-JAN-12 2QAH 1 OBSLTE VERSN REVDAT 2 24-FEB-09 2QAH 1 VERSN REVDAT 1 26-JUN-07 2QAH 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,J.BONANNO,J.M.SAUDER,S.K.BURLEY, JRNL AUTH 2 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE 2-PYRONE-4,6-DICARBOXYLIC ACID JRNL TITL 2 HYDROLASE FROM SPHINGOMONAS PAUCIMOBILIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.6 REMARK 3 NUMBER OF REFLECTIONS : 17023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 283 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 19.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.248 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.928 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2386 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3255 ; 2.379 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 7.955 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;37.388 ;23.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;20.970 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.082 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.173 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1889 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1207 ; 0.250 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1621 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 186 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.248 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1526 ; 2.237 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2395 ; 6.955 ;20.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 990 ;14.854 ;20.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 860 ; 6.940 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QAH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB043353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : X29 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21967 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.1M TRIS-HCL PH 8.5, REMARK 280 0.2 MG CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.37500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.37500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 393 O HOH A 401 2.07 REMARK 500 N GLY A 95 O HOH A 320 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 14 CD GLU A 14 OE2 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 3 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 PRO A 51 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 52 CG - CD - NE ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 MET A 58 CG - SD - CE ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 134 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 PRO A 136 C - N - CA ANGL. DEV. = -10.4 DEGREES REMARK 500 LEU A 165 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 MET A 169 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 200 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 205 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 205 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 217 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 288 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 31 89.17 -158.90 REMARK 500 LYS A 48 -68.09 72.78 REMARK 500 ALA A 54 82.14 -151.50 REMARK 500 ALA A 135 62.31 39.90 REMARK 500 ALA A 149 132.25 -34.18 REMARK 500 MET A 181 16.23 53.16 REMARK 500 CYS A 214 57.96 72.49 REMARK 500 HIS A 251 62.72 67.58 REMARK 500 ALA A 257 71.54 -155.60 REMARK 500 VAL A 283 -70.10 -110.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 134 ALA A 135 131.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 22 24.3 L L OUTSIDE RANGE REMARK 500 ALA A 135 23.8 L L OUTSIDE RANGE REMARK 500 THR A 284 23.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 326 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A 338 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH A 361 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A 369 DISTANCE = 8.42 ANGSTROMS REMARK 525 HOH A 404 DISTANCE = 5.62 ANGSTROMS REMARK 525 HOH A 408 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 409 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH A 419 DISTANCE = 11.16 ANGSTROMS REMARK 525 HOH A 420 DISTANCE = 13.42 ANGSTROMS REMARK 525 HOH A 426 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 495 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH A 499 DISTANCE = 5.59 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10053D RELATED DB: TARGETDB DBREF 2QAH A 4 295 UNP O87170 O87170_PSEPA 2 293 SEQADV 2QAH MET A 1 UNP O87170 CLONING ARTIFACT SEQADV 2QAH SER A 2 UNP O87170 CLONING ARTIFACT SEQADV 2QAH LEU A 3 UNP O87170 CLONING ARTIFACT SEQADV 2QAH GLU A 296 UNP O87170 CLONING ARTIFACT SEQADV 2QAH GLY A 297 UNP O87170 CLONING ARTIFACT SEQADV 2QAH HIS A 298 UNP O87170 CLONING ARTIFACT SEQADV 2QAH HIS A 299 UNP O87170 CLONING ARTIFACT SEQADV 2QAH HIS A 300 UNP O87170 CLONING ARTIFACT SEQADV 2QAH HIS A 301 UNP O87170 CLONING ARTIFACT SEQADV 2QAH HIS A 302 UNP O87170 CLONING ARTIFACT SEQADV 2QAH HIS A 303 UNP O87170 CLONING ARTIFACT SEQRES 1 A 303 MET SER LEU THR ASN ASP GLU ARG ILE LEU SER TRP ASN SEQRES 2 A 303 GLU THR PRO SER LYS PRO ARG TYR THR PRO PRO PRO GLY SEQRES 3 A 303 ALA ILE ASP ALA HIS CYS HIS VAL PHE GLY PRO MET ALA SEQRES 4 A 303 GLN PHE PRO PHE SER PRO LYS ALA LYS TYR LEU PRO ARG SEQRES 5 A 303 ASP ALA GLY PRO ASP MET LEU PHE ALA LEU ARG ASP HIS SEQRES 6 A 303 LEU GLY PHE ALA ARG ASN VAL ILE VAL GLN ALA SER CYS SEQRES 7 A 303 HIS GLY THR ASP ASN ALA ALA THR LEU ASP ALA ILE ALA SEQRES 8 A 303 ARG ALA GLN GLY LYS ALA ARG GLY ILE ALA VAL VAL ASP SEQRES 9 A 303 PRO ALA ILE ASP GLU ALA GLU LEU ALA ALA LEU HIS GLU SEQRES 10 A 303 GLY GLY MET ARG GLY ILE ARG PHE ASN PHE LEU LYS ARG SEQRES 11 A 303 LEU VAL ASP ASP ALA PRO LYS ASP LYS PHE LEU GLU VAL SEQRES 12 A 303 ALA GLY ARG LEU PRO ALA GLY TRP HIS VAL VAL ILE TYR SEQRES 13 A 303 PHE GLU ALA ASP ILE LEU GLU GLU LEU ARG PRO PHE MET SEQRES 14 A 303 ASP ALA ILE PRO VAL PRO ILE VAL ILE ASP HIS MET GLY SEQRES 15 A 303 ARG PRO ASP VAL ARG GLN GLY PRO ASP GLY ALA ASP MET SEQRES 16 A 303 LYS ALA PHE ARG ARG LEU LEU ASP SER ARG GLU ASP ILE SEQRES 17 A 303 TRP PHE LYS ALA THR CYS PRO ASP ARG LEU ASP PRO ALA SEQRES 18 A 303 GLY PRO PRO TRP ASP ASP PHE ALA ARG SER VAL ALA PRO SEQRES 19 A 303 LEU VAL ALA ASP TYR ALA ASP ARG VAL ILE TRP GLY THR SEQRES 20 A 303 ASP TRP PRO HIS PRO ASN MET GLN ASP ALA ILE PRO ASP SEQRES 21 A 303 ASP GLY LEU VAL VAL ASP MET ILE PRO ARG ILE ALA PRO SEQRES 22 A 303 THR PRO GLU LEU GLN HIS LYS MET LEU VAL THR ASN PRO SEQRES 23 A 303 MET ARG LEU TYR TRP SER GLU GLU MET GLU GLY HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS FORMUL 2 HOH *225(H2 O) HELIX 1 1 THR A 4 ARG A 8 5 5 HELIX 2 2 SER A 44 LYS A 48 5 5 HELIX 3 3 GLY A 55 GLY A 67 1 13 HELIX 4 4 ALA A 76 GLY A 80 5 5 HELIX 5 5 ASN A 83 ALA A 93 1 11 HELIX 6 6 ASP A 108 GLY A 118 1 11 HELIX 7 7 LEU A 128 ASP A 133 1 6 HELIX 8 8 PRO A 136 ARG A 146 1 11 HELIX 9 9 ILE A 161 ILE A 172 1 12 HELIX 10 10 HIS A 180 ARG A 183 5 4 HELIX 11 11 ASP A 185 GLY A 189 5 5 HELIX 12 12 GLY A 192 ARG A 205 1 14 HELIX 13 13 CYS A 214 ASP A 219 1 6 HELIX 14 14 TRP A 225 TYR A 239 1 15 HELIX 15 15 ASP A 260 MET A 267 1 8 HELIX 16 16 MET A 267 ALA A 272 1 6 HELIX 17 17 THR A 274 VAL A 283 1 10 HELIX 18 18 VAL A 283 TRP A 291 1 9 HELIX 19 19 SER A 292 MET A 295 5 4 SHEET 1 A 8 ILE A 28 CYS A 32 0 SHEET 2 A 8 ARG A 70 VAL A 74 1 O VAL A 74 N CYS A 32 SHEET 3 A 8 ALA A 97 ALA A 101 1 O ARG A 98 N ILE A 73 SHEET 4 A 8 MET A 120 PHE A 127 1 O ARG A 121 N GLY A 99 SHEET 5 A 8 HIS A 152 PHE A 157 1 O VAL A 154 N ILE A 123 SHEET 6 A 8 ILE A 176 ILE A 178 1 O VAL A 177 N ILE A 155 SHEET 7 A 8 ILE A 208 LYS A 211 1 O TRP A 209 N ILE A 176 SHEET 8 A 8 VAL A 243 ILE A 244 1 O ILE A 244 N PHE A 210 CISPEP 1 GLY A 36 PRO A 37 0 1.66 CISPEP 2 PRO A 223 PRO A 224 0 7.31 CISPEP 3 TRP A 249 PRO A 250 0 8.04 CRYST1 52.100 73.170 82.750 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012085 0.00000