data_2QAI # _entry.id 2QAI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QAI RCSB RCSB043354 WWPDB D_1000043354 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB PfR7 . unspecified PDB 2I4R 'Crystal structure of V-type ATP synthase subunit F from Archaeoglobus fulgidus' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QAI _pdbx_database_status.recvd_initial_deposition_date 2007-06-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vorobiev, S.M.' 1 'Su, M.' 2 'Seetharaman, J.' 3 'Ma, L.-C.' 4 'Shih, L.' 5 'Fang, Y.' 6 'Xiao, R.' 7 'Acton, T.B.' 8 'Montelione, G.T.' 9 'Hunt, J.F.' 10 'Tong, L.' 11 'Northeast Structural Genomics Consortium (NESG)' 12 # _citation.id primary _citation.title 'Crystal structure of the V-type ATP synthase subunit F from Pyrococcus furiosus.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vorobiev, S.M.' 1 primary 'Su, M.' 2 primary 'Seetharaman, J.' 3 primary 'Ma, L.-C.' 4 primary 'Shih, L.' 5 primary 'Fang, Y.' 6 primary 'Xiao, R.' 7 primary 'Montelione, G.T.' 8 primary 'Hunt, J.F.' 9 primary 'Tong, L.' 10 # _cell.entry_id 2QAI _cell.length_a 55.814 _cell.length_b 55.814 _cell.length_c 159.177 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QAI _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'V-type ATP synthase subunit F' 12921.538 2 3.6.3.14 ? ? ? 2 water nat water 18.015 82 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'V-type ATPase subunit F' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)KIVV(MSE)GDSDTVVGFRLAGVHEAYEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSLPEVKFPI ILQIPDKFGSIYGEDILRDVVRRAIGVELKRLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKIVVMGDSDTVVGFRLAGVHEAYEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSLPEVKFPIILQIPDKF GSIYGEDILRDVVRRAIGVELKRLEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier PfR7 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 LYS n 1 3 ILE n 1 4 VAL n 1 5 VAL n 1 6 MSE n 1 7 GLY n 1 8 ASP n 1 9 SER n 1 10 ASP n 1 11 THR n 1 12 VAL n 1 13 VAL n 1 14 GLY n 1 15 PHE n 1 16 ARG n 1 17 LEU n 1 18 ALA n 1 19 GLY n 1 20 VAL n 1 21 HIS n 1 22 GLU n 1 23 ALA n 1 24 TYR n 1 25 GLU n 1 26 TYR n 1 27 ASP n 1 28 GLU n 1 29 SER n 1 30 LEU n 1 31 GLU n 1 32 SER n 1 33 VAL n 1 34 GLU n 1 35 ARG n 1 36 ALA n 1 37 ARG n 1 38 ASN n 1 39 LYS n 1 40 LEU n 1 41 ARG n 1 42 GLU n 1 43 LEU n 1 44 LEU n 1 45 GLU n 1 46 ARG n 1 47 ASP n 1 48 ASP n 1 49 VAL n 1 50 GLY n 1 51 ILE n 1 52 ILE n 1 53 LEU n 1 54 ILE n 1 55 THR n 1 56 GLU n 1 57 ARG n 1 58 LEU n 1 59 ALA n 1 60 GLN n 1 61 ARG n 1 62 ILE n 1 63 GLY n 1 64 SER n 1 65 LEU n 1 66 PRO n 1 67 GLU n 1 68 VAL n 1 69 LYS n 1 70 PHE n 1 71 PRO n 1 72 ILE n 1 73 ILE n 1 74 LEU n 1 75 GLN n 1 76 ILE n 1 77 PRO n 1 78 ASP n 1 79 LYS n 1 80 PHE n 1 81 GLY n 1 82 SER n 1 83 ILE n 1 84 TYR n 1 85 GLY n 1 86 GLU n 1 87 ASP n 1 88 ILE n 1 89 LEU n 1 90 ARG n 1 91 ASP n 1 92 VAL n 1 93 VAL n 1 94 ARG n 1 95 ARG n 1 96 ALA n 1 97 ILE n 1 98 GLY n 1 99 VAL n 1 100 GLU n 1 101 LEU n 1 102 LYS n 1 103 ARG n 1 104 LEU n 1 105 GLU n 1 106 HIS n 1 107 HIS n 1 108 HIS n 1 109 HIS n 1 110 HIS n 1 111 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene 'atpF, PF0181' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Vc1, DSM 3638, JCM 8422' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus furiosus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2261 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 43587 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VATF_PYRFU _struct_ref.pdbx_db_accession Q8U4A7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKIVVMGDSDTVVGFRLAGVHEAYEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSLPEVKFPIILQIPDKF GSIYGEDILRDVVRRAIGVELKR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QAI A 1 ? 103 ? Q8U4A7 1 ? 103 ? 1 103 2 1 2QAI B 1 ? 103 ? Q8U4A7 1 ? 103 ? 1 103 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QAI MSE A 1 ? UNP Q8U4A7 MET 1 'MODIFIED RESIDUE' 1 1 1 2QAI MSE A 6 ? UNP Q8U4A7 MET 6 'MODIFIED RESIDUE' 6 2 1 2QAI LEU A 104 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 104 3 1 2QAI GLU A 105 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 105 4 1 2QAI HIS A 106 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 106 5 1 2QAI HIS A 107 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 107 6 1 2QAI HIS A 108 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 108 7 1 2QAI HIS A 109 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 109 8 1 2QAI HIS A 110 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 110 9 1 2QAI HIS A 111 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 111 10 2 2QAI MSE B 1 ? UNP Q8U4A7 MET 1 'MODIFIED RESIDUE' 1 11 2 2QAI MSE B 6 ? UNP Q8U4A7 MET 6 'MODIFIED RESIDUE' 6 12 2 2QAI LEU B 104 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 104 13 2 2QAI GLU B 105 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 105 14 2 2QAI HIS B 106 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 106 15 2 2QAI HIS B 107 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 107 16 2 2QAI HIS B 108 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 108 17 2 2QAI HIS B 109 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 109 18 2 2QAI HIS B 110 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 110 19 2 2QAI HIS B 111 ? UNP Q8U4A7 ? ? 'CLONING ARTIFACT' 111 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QAI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 48.70 _exptl_crystal.description 'THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'MICROBATCH UNDER OIL' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 10.0 _exptl_crystal_grow.pdbx_details '40% PEG 8000, 0.1M K2CO3, 10 mM Taurine, 0.1M CAPS pH 10.0, MICROBATCH UNDER OIL, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2007-05-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97915 1.0 2 0.9795 1.0 3 0.96791 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97915, 0.9795, 0.96791' # _reflns.entry_id 2QAI _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.40 _reflns.number_obs 18791 _reflns.number_all 18791 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 38.19 _reflns.B_iso_Wilson_estimate 26.7 _reflns.pdbx_redundancy 13.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.50 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.248 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 13.25 _reflns_shell.pdbx_redundancy 11.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2207 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2QAI _refine.ls_number_reflns_obs 17921 _refine.ls_number_reflns_all 18791 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 521149.80 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.80 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 95.4 _refine.ls_R_factor_obs 0.215 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free 0.238 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.0 _refine.ls_number_reflns_R_free 713 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.8 _refine.aniso_B[1][1] 6.42 _refine.aniso_B[2][2] 6.42 _refine.aniso_B[3][3] -12.84 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.36129 _refine.solvent_model_param_bsol 63.3006 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'THE FRIEDEL PAIRS WERE USED FOR PHASING' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2QAI _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.10 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.35 _refine_analyze.Luzzati_sigma_a_free 0.07 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1417 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 82 _refine_hist.number_atoms_total 1499 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 39.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.0 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.72 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.55 _refine_ls_shell.number_reflns_R_work 2691 _refine_ls_shell.R_factor_R_work 0.216 _refine_ls_shell.percent_reflns_obs 89.7 _refine_ls_shell.R_factor_R_free 0.214 _refine_ls_shell.R_factor_R_free_error 0.019 _refine_ls_shell.percent_reflns_R_free 4.5 _refine_ls_shell.number_reflns_R_free 128 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2QAI _struct.title 'Crystal structure of the V-type ATP synthase subunit F from Pyrococcus furiosus. NESG target PfR7.' _struct.pdbx_descriptor 'V-type ATP synthase subunit F (E.C.3.6.3.14)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QAI _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;ATP SYNTHASE, SUBUNIT F, VATF_PYRFU, atpF, NESG, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 8 ? GLY A 19 ? ASP A 8 GLY A 19 1 ? 12 HELX_P HELX_P2 2 SER A 29 ? GLU A 45 ? SER A 29 GLU A 45 1 ? 17 HELX_P HELX_P3 3 GLU A 56 ? GLY A 63 ? GLU A 56 GLY A 63 1 ? 8 HELX_P HELX_P4 4 ILE A 88 ? ILE A 97 ? ILE A 88 ILE A 97 1 ? 10 HELX_P HELX_P5 5 ASP B 8 ? ALA B 18 ? ASP B 8 ALA B 18 1 ? 11 HELX_P HELX_P6 6 SER B 29 ? ARG B 46 ? SER B 29 ARG B 46 1 ? 18 HELX_P HELX_P7 7 GLU B 56 ? GLY B 63 ? GLU B 56 GLY B 63 1 ? 8 HELX_P HELX_P8 8 ASP B 87 ? ALA B 96 ? ASP B 87 ALA B 96 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A LYS 2 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A VAL 5 C ? ? ? 1_555 A MSE 6 N ? ? A VAL 5 A MSE 6 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A MSE 6 C ? ? ? 1_555 A GLY 7 N ? ? A MSE 6 A GLY 7 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? B MSE 1 C ? ? ? 1_555 B LYS 2 N ? ? B MSE 1 B LYS 2 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? B VAL 5 C ? ? ? 1_555 B MSE 6 N ? ? B VAL 5 B MSE 6 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? B MSE 6 C ? ? ? 1_555 B GLY 7 N ? ? B MSE 6 B GLY 7 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 70 A . ? PHE 70 A PRO 71 A ? PRO 71 A 1 0.09 2 PHE 70 B . ? PHE 70 B PRO 71 B ? PRO 71 B 1 0.67 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 22 ? GLU A 25 ? GLU A 22 GLU A 25 A 2 LYS A 2 ? GLY A 7 ? LYS A 2 GLY A 7 A 3 VAL A 49 ? THR A 55 ? VAL A 49 THR A 55 A 4 ILE A 72 ? ILE A 76 ? ILE A 72 ILE A 76 B 1 GLU B 22 ? GLU B 25 ? GLU B 22 GLU B 25 B 2 LYS B 2 ? GLY B 7 ? LYS B 2 GLY B 7 B 3 VAL B 49 ? THR B 55 ? VAL B 49 THR B 55 B 4 ILE B 72 ? ILE B 76 ? ILE B 72 ILE B 76 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 22 ? O GLU A 22 N VAL A 5 ? N VAL A 5 A 2 3 N VAL A 4 ? N VAL A 4 O LEU A 53 ? O LEU A 53 A 3 4 N ILE A 52 ? N ILE A 52 O ILE A 72 ? O ILE A 72 B 1 2 O TYR B 24 ? O TYR B 24 N VAL B 5 ? N VAL B 5 B 2 3 N VAL B 4 ? N VAL B 4 O LEU B 53 ? O LEU B 53 B 3 4 N GLY B 50 ? N GLY B 50 O ILE B 72 ? O ILE B 72 # _database_PDB_matrix.entry_id 2QAI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2QAI _atom_sites.fract_transf_matrix[1][1] 0.017917 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017917 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006282 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 MSE 6 6 6 MSE MSE A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 HIS 21 21 21 HIS HIS A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ARG 41 41 41 ARG ALA A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 LYS 69 69 69 LYS ALA A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 LYS 79 79 79 LYS ALA A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 GLY 81 81 ? ? ? A . n A 1 82 SER 82 82 ? ? ? A . n A 1 83 ILE 83 83 ? ? ? A . n A 1 84 TYR 84 84 ? ? ? A . n A 1 85 GLY 85 85 ? ? ? A . n A 1 86 GLU 86 86 ? ? ? A . n A 1 87 ASP 87 87 87 ASP ALA A . n A 1 88 ILE 88 88 88 ILE ALA A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 ASP 91 91 91 ASP ALA A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 VAL 93 93 93 VAL ALA A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 ARG 95 95 95 ARG ALA A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ILE 97 97 97 ILE ALA A . n A 1 98 GLY 98 98 ? ? ? A . n A 1 99 VAL 99 99 ? ? ? A . n A 1 100 GLU 100 100 ? ? ? A . n A 1 101 LEU 101 101 ? ? ? A . n A 1 102 LYS 102 102 ? ? ? A . n A 1 103 ARG 103 103 ? ? ? A . n A 1 104 LEU 104 104 ? ? ? A . n A 1 105 GLU 105 105 ? ? ? A . n A 1 106 HIS 106 106 ? ? ? A . n A 1 107 HIS 107 107 ? ? ? A . n A 1 108 HIS 108 108 ? ? ? A . n A 1 109 HIS 109 109 ? ? ? A . n A 1 110 HIS 110 110 ? ? ? A . n A 1 111 HIS 111 111 ? ? ? A . n B 1 1 MSE 1 1 1 MSE MSE B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 VAL 4 4 4 VAL VAL B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 MSE 6 6 6 MSE MSE B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 ASP 8 8 8 ASP ASP B . n B 1 9 SER 9 9 9 SER SER B . n B 1 10 ASP 10 10 10 ASP ASP B . n B 1 11 THR 11 11 11 THR THR B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 VAL 13 13 13 VAL VAL B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 PHE 15 15 15 PHE PHE B . n B 1 16 ARG 16 16 16 ARG ARG B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 ALA 18 18 18 ALA ALA B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 HIS 21 21 21 HIS HIS B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 ALA 23 23 23 ALA ALA B . n B 1 24 TYR 24 24 24 TYR TYR B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 TYR 26 26 26 TYR TYR B . n B 1 27 ASP 27 27 27 ASP ASP B . n B 1 28 GLU 28 28 28 GLU GLU B . n B 1 29 SER 29 29 29 SER SER B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 SER 32 32 32 SER SER B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 ARG 35 35 35 ARG ARG B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 ARG 37 37 37 ARG ARG B . n B 1 38 ASN 38 38 38 ASN ASN B . n B 1 39 LYS 39 39 39 LYS LYS B . n B 1 40 LEU 40 40 40 LEU LEU B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 GLU 42 42 42 GLU GLU B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 ARG 46 46 46 ARG ARG B . n B 1 47 ASP 47 47 47 ASP ASP B . n B 1 48 ASP 48 48 48 ASP ASP B . n B 1 49 VAL 49 49 49 VAL VAL B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 ILE 51 51 51 ILE ILE B . n B 1 52 ILE 52 52 52 ILE ILE B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 THR 55 55 55 THR THR B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 LEU 58 58 58 LEU LEU B . n B 1 59 ALA 59 59 59 ALA ALA B . n B 1 60 GLN 60 60 60 GLN GLN B . n B 1 61 ARG 61 61 61 ARG ARG B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 GLY 63 63 63 GLY GLY B . n B 1 64 SER 64 64 64 SER SER B . n B 1 65 LEU 65 65 65 LEU LEU B . n B 1 66 PRO 66 66 66 PRO PRO B . n B 1 67 GLU 67 67 67 GLU ALA B . n B 1 68 VAL 68 68 68 VAL VAL B . n B 1 69 LYS 69 69 69 LYS LYS B . n B 1 70 PHE 70 70 70 PHE PHE B . n B 1 71 PRO 71 71 71 PRO PRO B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 ILE 73 73 73 ILE ILE B . n B 1 74 LEU 74 74 74 LEU LEU B . n B 1 75 GLN 75 75 75 GLN GLN B . n B 1 76 ILE 76 76 76 ILE ILE B . n B 1 77 PRO 77 77 77 PRO PRO B . n B 1 78 ASP 78 78 78 ASP ASP B . n B 1 79 LYS 79 79 ? ? ? B . n B 1 80 PHE 80 80 ? ? ? B . n B 1 81 GLY 81 81 ? ? ? B . n B 1 82 SER 82 82 ? ? ? B . n B 1 83 ILE 83 83 ? ? ? B . n B 1 84 TYR 84 84 ? ? ? B . n B 1 85 GLY 85 85 ? ? ? B . n B 1 86 GLU 86 86 86 GLU ALA B . n B 1 87 ASP 87 87 87 ASP ALA B . n B 1 88 ILE 88 88 88 ILE ILE B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 ARG 90 90 90 ARG ARG B . n B 1 91 ASP 91 91 91 ASP ASP B . n B 1 92 VAL 92 92 92 VAL ALA B . n B 1 93 VAL 93 93 93 VAL VAL B . n B 1 94 ARG 94 94 94 ARG ALA B . n B 1 95 ARG 95 95 95 ARG ARG B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 ILE 97 97 97 ILE ILE B . n B 1 98 GLY 98 98 98 GLY GLY B . n B 1 99 VAL 99 99 99 VAL VAL B . n B 1 100 GLU 100 100 ? ? ? B . n B 1 101 LEU 101 101 ? ? ? B . n B 1 102 LYS 102 102 ? ? ? B . n B 1 103 ARG 103 103 ? ? ? B . n B 1 104 LEU 104 104 ? ? ? B . n B 1 105 GLU 105 105 ? ? ? B . n B 1 106 HIS 106 106 ? ? ? B . n B 1 107 HIS 107 107 ? ? ? B . n B 1 108 HIS 108 108 ? ? ? B . n B 1 109 HIS 109 109 ? ? ? B . n B 1 110 HIS 110 110 ? ? ? B . n B 1 111 HIS 111 111 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 204 204 HOH WAT A . C 2 HOH 2 205 205 HOH WAT A . C 2 HOH 3 207 207 HOH WAT A . C 2 HOH 4 208 208 HOH WAT A . C 2 HOH 5 209 209 HOH WAT A . C 2 HOH 6 211 211 HOH WAT A . C 2 HOH 7 213 213 HOH WAT A . C 2 HOH 8 218 218 HOH WAT A . C 2 HOH 9 221 221 HOH WAT A . C 2 HOH 10 224 224 HOH WAT A . C 2 HOH 11 225 225 HOH WAT A . C 2 HOH 12 226 226 HOH WAT A . C 2 HOH 13 228 228 HOH WAT A . C 2 HOH 14 229 229 HOH WAT A . C 2 HOH 15 232 232 HOH WAT A . C 2 HOH 16 233 233 HOH WAT A . C 2 HOH 17 237 237 HOH WAT A . C 2 HOH 18 238 238 HOH WAT A . C 2 HOH 19 242 242 HOH WAT A . C 2 HOH 20 247 247 HOH WAT A . C 2 HOH 21 252 252 HOH WAT A . C 2 HOH 22 253 253 HOH WAT A . C 2 HOH 23 255 255 HOH WAT A . C 2 HOH 24 258 258 HOH WAT A . C 2 HOH 25 259 259 HOH WAT A . C 2 HOH 26 260 260 HOH WAT A . C 2 HOH 27 263 263 HOH WAT A . C 2 HOH 28 264 264 HOH WAT A . C 2 HOH 29 265 265 HOH WAT A . C 2 HOH 30 270 270 HOH WAT A . C 2 HOH 31 271 271 HOH WAT A . C 2 HOH 32 272 272 HOH WAT A . C 2 HOH 33 273 273 HOH WAT A . C 2 HOH 34 275 275 HOH WAT A . C 2 HOH 35 281 281 HOH WAT A . C 2 HOH 36 283 283 HOH WAT A . C 2 HOH 37 290 290 HOH WAT A . C 2 HOH 38 292 292 HOH WAT A . C 2 HOH 39 293 293 HOH WAT A . C 2 HOH 40 297 297 HOH WAT A . C 2 HOH 41 298 298 HOH WAT A . D 2 HOH 1 201 201 HOH WAT B . D 2 HOH 2 203 203 HOH WAT B . D 2 HOH 3 206 206 HOH WAT B . D 2 HOH 4 210 210 HOH WAT B . D 2 HOH 5 212 212 HOH WAT B . D 2 HOH 6 214 214 HOH WAT B . D 2 HOH 7 215 215 HOH WAT B . D 2 HOH 8 216 216 HOH WAT B . D 2 HOH 9 217 217 HOH WAT B . D 2 HOH 10 219 219 HOH WAT B . D 2 HOH 11 220 220 HOH WAT B . D 2 HOH 12 222 222 HOH WAT B . D 2 HOH 13 223 223 HOH WAT B . D 2 HOH 14 230 230 HOH WAT B . D 2 HOH 15 231 231 HOH WAT B . D 2 HOH 16 234 234 HOH WAT B . D 2 HOH 17 235 235 HOH WAT B . D 2 HOH 18 236 236 HOH WAT B . D 2 HOH 19 239 239 HOH WAT B . D 2 HOH 20 240 240 HOH WAT B . D 2 HOH 21 241 241 HOH WAT B . D 2 HOH 22 243 243 HOH WAT B . D 2 HOH 23 245 245 HOH WAT B . D 2 HOH 24 246 246 HOH WAT B . D 2 HOH 25 249 249 HOH WAT B . D 2 HOH 26 251 251 HOH WAT B . D 2 HOH 27 257 257 HOH WAT B . D 2 HOH 28 261 261 HOH WAT B . D 2 HOH 29 262 262 HOH WAT B . D 2 HOH 30 266 266 HOH WAT B . D 2 HOH 31 274 274 HOH WAT B . D 2 HOH 32 280 280 HOH WAT B . D 2 HOH 33 282 282 HOH WAT B . D 2 HOH 34 291 291 HOH WAT B . D 2 HOH 35 294 294 HOH WAT B . D 2 HOH 36 295 295 HOH WAT B . D 2 HOH 37 296 296 HOH WAT B . D 2 HOH 38 299 299 HOH WAT B . D 2 HOH 39 300 300 HOH WAT B . D 2 HOH 40 301 301 HOH WAT B . D 2 HOH 41 302 302 HOH WAT B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 6 A MSE 6 ? MET SELENOMETHIONINE 3 B MSE 1 B MSE 1 ? MET SELENOMETHIONINE 4 B MSE 6 B MSE 6 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-26 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' audit_author 3 5 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_audit_author.name' 3 5 'Structure model' '_citation_author.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SnB phasing . ? 5 RESOLVE phasing . ? 6 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). AUTHORS STATE THAT THE LIGHT SCATTERING DATA ALSO SHOW THAT THE PROTEIN EXISTS AS A DIMER IN SOLUTION. ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 78 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -56.96 _pdbx_validate_torsion.psi 0.51 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 41 ? CG ? A ARG 41 CG 2 1 Y 1 A ARG 41 ? CD ? A ARG 41 CD 3 1 Y 1 A ARG 41 ? NE ? A ARG 41 NE 4 1 Y 1 A ARG 41 ? CZ ? A ARG 41 CZ 5 1 Y 1 A ARG 41 ? NH1 ? A ARG 41 NH1 6 1 Y 1 A ARG 41 ? NH2 ? A ARG 41 NH2 7 1 Y 1 A LYS 69 ? CG ? A LYS 69 CG 8 1 Y 1 A LYS 69 ? CD ? A LYS 69 CD 9 1 Y 1 A LYS 69 ? CE ? A LYS 69 CE 10 1 Y 1 A LYS 69 ? NZ ? A LYS 69 NZ 11 1 Y 1 A LYS 79 ? CG ? A LYS 79 CG 12 1 Y 1 A LYS 79 ? CD ? A LYS 79 CD 13 1 Y 1 A LYS 79 ? CE ? A LYS 79 CE 14 1 Y 1 A LYS 79 ? NZ ? A LYS 79 NZ 15 1 Y 1 A ASP 87 ? CG ? A ASP 87 CG 16 1 Y 1 A ASP 87 ? OD1 ? A ASP 87 OD1 17 1 Y 1 A ASP 87 ? OD2 ? A ASP 87 OD2 18 1 Y 1 A ILE 88 ? CG1 ? A ILE 88 CG1 19 1 Y 1 A ILE 88 ? CG2 ? A ILE 88 CG2 20 1 Y 1 A ILE 88 ? CD1 ? A ILE 88 CD1 21 1 Y 1 A ASP 91 ? CG ? A ASP 91 CG 22 1 Y 1 A ASP 91 ? OD1 ? A ASP 91 OD1 23 1 Y 1 A ASP 91 ? OD2 ? A ASP 91 OD2 24 1 Y 1 A VAL 93 ? CG1 ? A VAL 93 CG1 25 1 Y 1 A VAL 93 ? CG2 ? A VAL 93 CG2 26 1 Y 1 A ARG 95 ? CG ? A ARG 95 CG 27 1 Y 1 A ARG 95 ? CD ? A ARG 95 CD 28 1 Y 1 A ARG 95 ? NE ? A ARG 95 NE 29 1 Y 1 A ARG 95 ? CZ ? A ARG 95 CZ 30 1 Y 1 A ARG 95 ? NH1 ? A ARG 95 NH1 31 1 Y 1 A ARG 95 ? NH2 ? A ARG 95 NH2 32 1 Y 1 A ILE 97 ? CG1 ? A ILE 97 CG1 33 1 Y 1 A ILE 97 ? CG2 ? A ILE 97 CG2 34 1 Y 1 A ILE 97 ? CD1 ? A ILE 97 CD1 35 1 Y 1 B GLU 67 ? CG ? B GLU 67 CG 36 1 Y 1 B GLU 67 ? CD ? B GLU 67 CD 37 1 Y 1 B GLU 67 ? OE1 ? B GLU 67 OE1 38 1 Y 1 B GLU 67 ? OE2 ? B GLU 67 OE2 39 1 Y 1 B GLU 86 ? CG ? B GLU 86 CG 40 1 Y 1 B GLU 86 ? CD ? B GLU 86 CD 41 1 Y 1 B GLU 86 ? OE1 ? B GLU 86 OE1 42 1 Y 1 B GLU 86 ? OE2 ? B GLU 86 OE2 43 1 Y 1 B ASP 87 ? CG ? B ASP 87 CG 44 1 Y 1 B ASP 87 ? OD1 ? B ASP 87 OD1 45 1 Y 1 B ASP 87 ? OD2 ? B ASP 87 OD2 46 1 Y 1 B VAL 92 ? CG1 ? B VAL 92 CG1 47 1 Y 1 B VAL 92 ? CG2 ? B VAL 92 CG2 48 1 Y 1 B ARG 94 ? CG ? B ARG 94 CG 49 1 Y 1 B ARG 94 ? CD ? B ARG 94 CD 50 1 Y 1 B ARG 94 ? NE ? B ARG 94 NE 51 1 Y 1 B ARG 94 ? CZ ? B ARG 94 CZ 52 1 Y 1 B ARG 94 ? NH1 ? B ARG 94 NH1 53 1 Y 1 B ARG 94 ? NH2 ? B ARG 94 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 81 ? A GLY 81 2 1 Y 1 A SER 82 ? A SER 82 3 1 Y 1 A ILE 83 ? A ILE 83 4 1 Y 1 A TYR 84 ? A TYR 84 5 1 Y 1 A GLY 85 ? A GLY 85 6 1 Y 1 A GLU 86 ? A GLU 86 7 1 Y 1 A GLY 98 ? A GLY 98 8 1 Y 1 A VAL 99 ? A VAL 99 9 1 Y 1 A GLU 100 ? A GLU 100 10 1 Y 1 A LEU 101 ? A LEU 101 11 1 Y 1 A LYS 102 ? A LYS 102 12 1 Y 1 A ARG 103 ? A ARG 103 13 1 Y 1 A LEU 104 ? A LEU 104 14 1 Y 1 A GLU 105 ? A GLU 105 15 1 Y 1 A HIS 106 ? A HIS 106 16 1 Y 1 A HIS 107 ? A HIS 107 17 1 Y 1 A HIS 108 ? A HIS 108 18 1 Y 1 A HIS 109 ? A HIS 109 19 1 Y 1 A HIS 110 ? A HIS 110 20 1 Y 1 A HIS 111 ? A HIS 111 21 1 Y 1 B LYS 79 ? B LYS 79 22 1 Y 1 B PHE 80 ? B PHE 80 23 1 Y 1 B GLY 81 ? B GLY 81 24 1 Y 1 B SER 82 ? B SER 82 25 1 Y 1 B ILE 83 ? B ILE 83 26 1 Y 1 B TYR 84 ? B TYR 84 27 1 Y 1 B GLY 85 ? B GLY 85 28 1 Y 1 B GLU 100 ? B GLU 100 29 1 Y 1 B LEU 101 ? B LEU 101 30 1 Y 1 B LYS 102 ? B LYS 102 31 1 Y 1 B ARG 103 ? B ARG 103 32 1 Y 1 B LEU 104 ? B LEU 104 33 1 Y 1 B GLU 105 ? B GLU 105 34 1 Y 1 B HIS 106 ? B HIS 106 35 1 Y 1 B HIS 107 ? B HIS 107 36 1 Y 1 B HIS 108 ? B HIS 108 37 1 Y 1 B HIS 109 ? B HIS 109 38 1 Y 1 B HIS 110 ? B HIS 110 39 1 Y 1 B HIS 111 ? B HIS 111 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #