HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-JUN-07 2QC0 OBSLTE 14-OCT-08 2QC0 3EQX TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN (NP_719793.1) TITLE 2 FROM SHEWANELLA ONEIDENSIS AT 1.60 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TENTATIVE PEPTIDE FRAGMENT; COMPND 7 CHAIN: K; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS MR-1; SOURCE 3 STRAIN: MR-1; SOURCE 4 GENE: NP_719793.1, SO_4266; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: TENTATIVE MIMIC OF A FOLATE DERIVATIVE KEYWDS NP_719793.1, UNCHARACTERIZED PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 2 14-OCT-08 2QC0 1 OBSLTE REVDAT 1 03-JUL-07 2QC0 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN JRNL TITL 2 (NP_719793.1) FROM SHEWANELLA ONEIDENSIS AT 1.60 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 106418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5304 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7337 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 400 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 6830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04000 REMARK 3 B22 (A**2) : -0.95000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.122 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6183 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4107 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8490 ; 1.548 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10159 ; 1.008 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 809 ; 5.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 283 ;40.148 ;25.018 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1096 ;12.459 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;12.842 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1000 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6871 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1166 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1446 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4359 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3074 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2939 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 615 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.198 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4197 ; 2.237 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1489 ; 0.564 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6216 ; 2.834 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2610 ; 4.952 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2233 ; 6.779 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 370 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9741 11.8337 -75.2933 REMARK 3 T TENSOR REMARK 3 T11: -0.0666 T22: -0.0488 REMARK 3 T33: -0.0156 T12: -0.0056 REMARK 3 T13: 0.0048 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.6184 L22: 1.0997 REMARK 3 L33: 0.7427 L12: 0.1896 REMARK 3 L13: -0.1221 L23: -0.1949 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: 0.0432 S13: -0.1518 REMARK 3 S21: -0.0735 S22: 0.0162 S23: 0.0107 REMARK 3 S31: 0.0259 S32: -0.0201 S33: 0.0139 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 370 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1863 49.6903 -84.8463 REMARK 3 T TENSOR REMARK 3 T11: -0.0666 T22: -0.0468 REMARK 3 T33: -0.0430 T12: 0.0114 REMARK 3 T13: 0.0094 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.3267 L22: 0.9041 REMARK 3 L33: 0.8560 L12: 0.0102 REMARK 3 L13: 0.0524 L23: 0.1196 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: 0.0335 S13: 0.0589 REMARK 3 S21: -0.0516 S22: -0.0050 S23: 0.0100 REMARK 3 S31: -0.0044 S32: -0.0645 S33: 0.0248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. 3. ATOM RECORD CONTAINS RESIDUAL REMARK 3 B FACTORS ONLY. 4. A TENTATIVE PEPTIDE FRAGMENT K501-K504 HAS REMARK 3 BEEN MODELLED INTO ELECTRON DENSITY NEAR THE BINDING MOTIF REMARK 3 HPFXXGNG (PRESENT IN FIC PROTEINS) STARTING AT HIS198 IN CHAIN REMARK 3 A. MODELLING EXPERIMENTS SUGGEST THAT THIS COULD BE A MIMIC OF REMARK 3 A FOLATE DERIVATIVE AS MIGHT BE EXPECTED FOR A FIC PROTEIN. 5. REMARK 3 THERE IS ANOTHER REGION OF UNMODELLED ELECTRON DENSITY NEAR REMARK 3 THE ABOVE DENSITY AND RESIDUE A248 THAT COULD POTENTIALLY BE REMARK 3 AN ANOTHER LIGAND. 6. RESIDUES A344-A345 IN CHAIN A ARE REMARK 3 DISORDERED AND HAVE NOT BEEN MODELLED. REMARK 4 REMARK 4 2QC0 COMPLIES WITH FORMAT V. 3.1, 01-AUG-2007 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE RCSB ID CODE IS RCSB043408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-2007 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97905, 0.97935 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106471 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.553 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NAF, 20.0% PEG 3350, REMARK 280 NO BUFFER PH 7.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 1/2-X,-Y,1/2+Z REMARK 290 3555 -X,1/2+Y,1/2-Z REMARK 290 4555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.60500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.60500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT REMARK 300 OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, K, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLN A 344 REMARK 465 SER A 345 REMARK 465 ALA A 371 REMARK 465 LEU A 372 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 GLU B 2 REMARK 465 TRP B 3 REMARK 465 GLN B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 GLN B 7 REMARK 465 ALA B 8 REMARK 465 TYR B 9 REMARK 465 ASN B 10 REMARK 465 ALA B 371 REMARK 465 LEU B 372 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 NZ REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 GLN A 291 OE1 NE2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 GLU A 318 CD OE1 OE2 REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 GLU A 348 CD OE1 OE2 REMARK 470 LYS A 349 CD CE NZ REMARK 470 GLU K 501 OE1 OE2 REMARK 470 LYS B 20 CE NZ REMARK 470 LYS B 347 CG CD CE NZ REMARK 470 LYS B 349 CG CD CE NZ REMARK 470 GLN B 366 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 24 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ASP B 136 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 -156.49 -98.93 REMARK 500 GLU A 88 115.70 -162.84 REMARK 500 LEU A 321 -60.99 77.02 REMARK 500 ASP B 18 -158.23 -100.67 REMARK 500 GLU B 26 65.27 -102.68 REMARK 500 HIS B 353 78.25 -117.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 376495 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 THE STRAIN CLONED DIFFERS FROM THE SEQUENCED STRAIN IN THE REMARK 999 DATABASE. SEQUENCING CONFIRMED THE ENGINEERED MUTATION REMARK 999 G109C STRAIN VARIATION. THE ELECTRON DENSITY SUPPORTS THIS REMARK 999 ASSIGNMENT. DBREF 2QC0 A 1 372 UNP Q8E9K5 Q8E9K5_SHEON 1 372 DBREF 2QC0 B 1 372 UNP Q8E9K5 Q8E9K5_SHEON 1 372 DBREF 2QC0 K 501 504 PDB 2QC0 2QC0 501 504 SEQADV 2QC0 GLY A 0 UNP Q8E9K5 LEADER SEQUENCE SEQADV 2QC0 MSE A 1 UNP Q8E9K5 MET 1 MODIFIED RESIDUE SEQADV 2QC0 MSE A 95 UNP Q8E9K5 MET 95 MODIFIED RESIDUE SEQADV 2QC0 CYS A 109 UNP Q8E9K5 GLY 109 SEE REMARK 999 SEQADV 2QC0 MSE A 135 UNP Q8E9K5 MET 135 MODIFIED RESIDUE SEQADV 2QC0 MSE A 187 UNP Q8E9K5 MET 187 MODIFIED RESIDUE SEQADV 2QC0 MSE A 189 UNP Q8E9K5 MET 189 MODIFIED RESIDUE SEQADV 2QC0 MSE A 360 UNP Q8E9K5 MET 360 MODIFIED RESIDUE SEQADV 2QC0 GLY B 0 UNP Q8E9K5 LEADER SEQUENCE SEQADV 2QC0 MSE B 1 UNP Q8E9K5 MET 1 MODIFIED RESIDUE SEQADV 2QC0 MSE B 95 UNP Q8E9K5 MET 95 MODIFIED RESIDUE SEQADV 2QC0 CYS B 109 UNP Q8E9K5 GLY 109 SEE REMARK 999 SEQADV 2QC0 MSE B 135 UNP Q8E9K5 MET 135 MODIFIED RESIDUE SEQADV 2QC0 MSE B 187 UNP Q8E9K5 MET 187 MODIFIED RESIDUE SEQADV 2QC0 MSE B 189 UNP Q8E9K5 MET 189 MODIFIED RESIDUE SEQADV 2QC0 MSE B 360 UNP Q8E9K5 MET 360 MODIFIED RESIDUE SEQRES 1 A 373 GLY MSE GLU TRP GLN ALA GLU GLN ALA TYR ASN HIS LEU SEQRES 2 A 373 PRO PRO LEU PRO LEU ASP SER LYS LEU ALA GLU LEU ALA SEQRES 3 A 373 GLU THR LEU PRO ILE LEU LYS ALA CYS ILE PRO ALA ARG SEQRES 4 A 373 ALA ALA LEU ALA GLU LEU LYS GLN ALA GLY GLU LEU LEU SEQRES 5 A 373 PRO ASN GLN GLY LEU LEU ILE ASN LEU LEU PRO LEU LEU SEQRES 6 A 373 GLU ALA GLN GLY SER SER GLU ILE GLU ASN ILE VAL THR SEQRES 7 A 373 THR THR ASP LYS LEU PHE GLN TYR ALA GLN GLU ASP SER SEQRES 8 A 373 GLN ALA ASP PRO MSE THR LYS GLU ALA LEU ARG TYR ARG SEQRES 9 A 373 THR ALA LEU TYR GLN CYS PHE THR GLN LEU SER ASN ARG SEQRES 10 A 373 PRO LEU CYS VAL THR THR ALA LEU GLU ILE CYS SER THR SEQRES 11 A 373 ILE LYS SER VAL GLN MSE ASP VAL ARG LYS VAL PRO GLY SEQRES 12 A 373 THR SER LEU THR ASN GLN ALA THR GLY GLU VAL ILE TYR SEQRES 13 A 373 THR PRO PRO ALA GLY GLU SER VAL ILE ARG ASP LEU LEU SEQRES 14 A 373 SER ASN TRP GLU ALA PHE LEU HIS ASN GLN ASP ASP VAL SEQRES 15 A 373 ASP PRO LEU ILE LYS MSE ALA MSE ALA HIS TYR GLN PHE SEQRES 16 A 373 GLU ALA ILE HIS PRO PHE ILE ASP GLY ASN GLY ARG THR SEQRES 17 A 373 GLY ARG VAL LEU ASN ILE LEU TYR LEU ILE ASP GLN GLN SEQRES 18 A 373 LEU LEU SER ALA PRO ILE LEU TYR LEU SER ARG TYR ILE SEQRES 19 A 373 VAL ALA HIS LYS GLN ASP TYR TYR ARG LEU LEU LEU ASN SEQRES 20 A 373 VAL THR THR GLN GLN GLU TRP GLN PRO TRP ILE ILE PHE SEQRES 21 A 373 ILE LEU ASN ALA VAL GLU GLN THR ALA LYS TRP THR THR SEQRES 22 A 373 HIS LYS ILE ALA ALA ALA ARG GLU LEU ILE ALA HIS THR SEQRES 23 A 373 THR GLU TYR VAL ARG GLN GLN LEU PRO LYS ILE TYR SER SEQRES 24 A 373 HIS GLU LEU VAL GLN VAL ILE PHE GLU GLN PRO TYR CYS SEQRES 25 A 373 ARG ILE GLN ASN LEU VAL GLU SER GLY LEU ALA LYS ARG SEQRES 26 A 373 GLN THR ALA SER VAL TYR LEU LYS GLN LEU CYS ASP ILE SEQRES 27 A 373 GLY VAL LEU GLU GLU VAL GLN SER GLY LYS GLU LYS LEU SEQRES 28 A 373 PHE VAL HIS PRO LYS PHE VAL THR LEU MSE THR LYS ASP SEQRES 29 A 373 SER ASN GLN PHE SER ARG TYR ALA LEU SEQRES 1 K 4 GLU ALA TRP GLU SEQRES 1 B 373 GLY MSE GLU TRP GLN ALA GLU GLN ALA TYR ASN HIS LEU SEQRES 2 B 373 PRO PRO LEU PRO LEU ASP SER LYS LEU ALA GLU LEU ALA SEQRES 3 B 373 GLU THR LEU PRO ILE LEU LYS ALA CYS ILE PRO ALA ARG SEQRES 4 B 373 ALA ALA LEU ALA GLU LEU LYS GLN ALA GLY GLU LEU LEU SEQRES 5 B 373 PRO ASN GLN GLY LEU LEU ILE ASN LEU LEU PRO LEU LEU SEQRES 6 B 373 GLU ALA GLN GLY SER SER GLU ILE GLU ASN ILE VAL THR SEQRES 7 B 373 THR THR ASP LYS LEU PHE GLN TYR ALA GLN GLU ASP SER SEQRES 8 B 373 GLN ALA ASP PRO MSE THR LYS GLU ALA LEU ARG TYR ARG SEQRES 9 B 373 THR ALA LEU TYR GLN CYS PHE THR GLN LEU SER ASN ARG SEQRES 10 B 373 PRO LEU CYS VAL THR THR ALA LEU GLU ILE CYS SER THR SEQRES 11 B 373 ILE LYS SER VAL GLN MSE ASP VAL ARG LYS VAL PRO GLY SEQRES 12 B 373 THR SER LEU THR ASN GLN ALA THR GLY GLU VAL ILE TYR SEQRES 13 B 373 THR PRO PRO ALA GLY GLU SER VAL ILE ARG ASP LEU LEU SEQRES 14 B 373 SER ASN TRP GLU ALA PHE LEU HIS ASN GLN ASP ASP VAL SEQRES 15 B 373 ASP PRO LEU ILE LYS MSE ALA MSE ALA HIS TYR GLN PHE SEQRES 16 B 373 GLU ALA ILE HIS PRO PHE ILE ASP GLY ASN GLY ARG THR SEQRES 17 B 373 GLY ARG VAL LEU ASN ILE LEU TYR LEU ILE ASP GLN GLN SEQRES 18 B 373 LEU LEU SER ALA PRO ILE LEU TYR LEU SER ARG TYR ILE SEQRES 19 B 373 VAL ALA HIS LYS GLN ASP TYR TYR ARG LEU LEU LEU ASN SEQRES 20 B 373 VAL THR THR GLN GLN GLU TRP GLN PRO TRP ILE ILE PHE SEQRES 21 B 373 ILE LEU ASN ALA VAL GLU GLN THR ALA LYS TRP THR THR SEQRES 22 B 373 HIS LYS ILE ALA ALA ALA ARG GLU LEU ILE ALA HIS THR SEQRES 23 B 373 THR GLU TYR VAL ARG GLN GLN LEU PRO LYS ILE TYR SER SEQRES 24 B 373 HIS GLU LEU VAL GLN VAL ILE PHE GLU GLN PRO TYR CYS SEQRES 25 B 373 ARG ILE GLN ASN LEU VAL GLU SER GLY LEU ALA LYS ARG SEQRES 26 B 373 GLN THR ALA SER VAL TYR LEU LYS GLN LEU CYS ASP ILE SEQRES 27 B 373 GLY VAL LEU GLU GLU VAL GLN SER GLY LYS GLU LYS LEU SEQRES 28 B 373 PHE VAL HIS PRO LYS PHE VAL THR LEU MSE THR LYS ASP SEQRES 29 B 373 SER ASN GLN PHE SER ARG TYR ALA LEU MODRES 2QC0 MSE A 95 MET SELENOMETHIONINE MODRES 2QC0 MSE A 135 MET SELENOMETHIONINE MODRES 2QC0 MSE A 187 MET SELENOMETHIONINE MODRES 2QC0 MSE A 189 MET SELENOMETHIONINE MODRES 2QC0 MSE A 360 MET SELENOMETHIONINE MODRES 2QC0 MSE B 95 MET SELENOMETHIONINE MODRES 2QC0 MSE B 135 MET SELENOMETHIONINE MODRES 2QC0 MSE B 187 MET SELENOMETHIONINE MODRES 2QC0 MSE B 189 MET SELENOMETHIONINE MODRES 2QC0 MSE B 360 MET SELENOMETHIONINE HET MSE A 95 13 HET MSE A 135 8 HET MSE A 187 13 HET MSE A 189 8 HET MSE A 360 8 HET MSE B 95 13 HET MSE B 135 8 HET MSE B 187 13 HET MSE B 189 8 HET MSE B 360 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 4 HOH *812(H2 O) HELIX 1 1 SER A 19 GLU A 26 1 8 HELIX 2 2 THR A 27 LEU A 51 1 25 HELIX 3 3 ASN A 53 GLU A 73 1 21 HELIX 4 4 THR A 78 ALA A 86 1 9 HELIX 5 5 ASP A 93 LEU A 113 1 21 HELIX 6 6 CYS A 119 SER A 132 1 14 HELIX 7 7 GLY A 160 ASN A 177 1 18 HELIX 8 8 ASP A 182 HIS A 198 1 17 HELIX 9 9 GLY A 203 GLN A 219 1 17 HELIX 10 10 LEU A 229 HIS A 236 1 8 HELIX 11 11 HIS A 236 GLN A 251 1 16 HELIX 12 12 GLU A 252 LEU A 293 1 42 HELIX 13 13 SER A 298 GLN A 308 1 11 HELIX 14 14 ILE A 313 SER A 319 1 7 HELIX 15 15 LYS A 323 ILE A 337 1 15 HELIX 16 16 HIS A 353 LYS A 362 1 10 HELIX 17 17 ASP B 18 GLU B 26 1 9 HELIX 18 18 THR B 27 LEU B 51 1 25 HELIX 19 19 ASN B 53 GLU B 73 1 21 HELIX 20 20 THR B 78 TYR B 85 1 8 HELIX 21 21 ASP B 93 GLN B 112 1 20 HELIX 22 22 LEU B 113 ASN B 115 5 3 HELIX 23 23 CYS B 119 SER B 132 1 14 HELIX 24 24 GLY B 160 HIS B 176 1 17 HELIX 25 25 ASP B 182 HIS B 198 1 17 HELIX 26 26 GLY B 203 GLN B 219 1 17 HELIX 27 27 LEU B 229 HIS B 236 1 8 HELIX 28 28 HIS B 236 GLN B 251 1 16 HELIX 29 29 GLU B 252 LEU B 293 1 42 HELIX 30 30 SER B 298 GLN B 308 1 11 HELIX 31 31 ARG B 312 SER B 319 1 8 HELIX 32 32 LYS B 323 ILE B 337 1 15 HELIX 33 33 HIS B 353 LYS B 362 1 10 SHEET 1 A 3 VAL A 153 TYR A 155 0 SHEET 2 A 3 SER A 144 THR A 146 -1 N LEU A 145 O TYR A 155 SHEET 3 A 3 ALA K 502 GLU K 504 -1 O ALA K 502 N THR A 146 SHEET 1 B 3 TYR A 310 ARG A 312 0 SHEET 2 B 3 LEU A 350 VAL A 352 -1 O PHE A 351 N CYS A 311 SHEET 3 B 3 GLU A 341 VAL A 343 -1 N VAL A 343 O LEU A 350 SHEET 1 C 2 LEU B 145 THR B 146 0 SHEET 2 C 2 VAL B 153 TYR B 155 -1 O ILE B 154 N LEU B 145 SHEET 1 D 3 TYR B 310 CYS B 311 0 SHEET 2 D 3 GLU B 348 VAL B 352 -1 O PHE B 351 N CYS B 311 SHEET 3 D 3 GLU B 341 SER B 345 -1 N SER B 345 O GLU B 348 LINK C PRO A 94 N MSE A 95 1555 1555 1.34 LINK C MSE A 95 N THR A 96 1555 1555 1.33 LINK C GLN A 134 N MSE A 135 1555 1555 1.32 LINK C MSE A 135 N ASP A 136 1555 1555 1.33 LINK C LYS A 186 N MSE A 187 1555 1555 1.32 LINK C MSE A 187 N ALA A 188 1555 1555 1.34 LINK C ALA A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N ALA A 190 1555 1555 1.32 LINK C LEU A 359 N MSE A 360 1555 1555 1.32 LINK C MSE A 360 N THR A 361 1555 1555 1.33 LINK C PRO B 94 N MSE B 95 1555 1555 1.33 LINK C MSE B 95 N THR B 96 1555 1555 1.33 LINK C GLN B 134 N MSE B 135 1555 1555 1.33 LINK C MSE B 135 N ASP B 136 1555 1555 1.33 LINK C LYS B 186 N MSE B 187 1555 1555 1.32 LINK C MSE B 187 N ALA B 188 1555 1555 1.33 LINK C ALA B 188 N MSE B 189 1555 1555 1.33 LINK C MSE B 189 N ALA B 190 1555 1555 1.32 LINK C LEU B 359 N MSE B 360 1555 1555 1.33 LINK C MSE B 360 N THR B 361 1555 1555 1.34 CRYST1 71.210 80.300 141.000 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014043 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007092 0.00000