HEADER LYASE 19-JUN-07 2QCC TITLE CRYSTAL STRUCTURE OF THE OROTIDINE-5'-MONOPHOSPHATE DECARBOXYLASE TITLE 2 DOMAIN OF HUMAN UMP SYNTHASE, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE 5'- PHOSPHATE DECARBOXYLASE (OMPDECASE); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 EC: 4.1.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UMPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA 2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM-30 KEYWDS UMP SYNTHASE, DECARBOXYLASE, TIM BARREL, CATALYTIC PROFICIENCY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WITTMANN,M.RUDOLPH REVDAT 6 21-FEB-24 2QCC 1 REMARK SEQADV REVDAT 5 13-JUL-11 2QCC 1 VERSN REVDAT 4 24-FEB-09 2QCC 1 VERSN REVDAT 3 18-MAR-08 2QCC 1 REMARK REVDAT 2 12-FEB-08 2QCC 1 JRNL REVDAT 1 06-NOV-07 2QCC 0 JRNL AUTH J.G.WITTMANN,D.HEINRICH,K.GASOW,A.FREY,U.DIEDERICHSEN, JRNL AUTH 2 M.G.RUDOLPH JRNL TITL STRUCTURES OF THE HUMAN OROTIDINE-5'-MONOPHOSPHATE JRNL TITL 2 DECARBOXYLASE SUPPORT A COVALENT MECHANISM AND PROVIDE A JRNL TITL 3 FRAMEWORK FOR DRUG DESIGN. JRNL REF STRUCTURE V. 16 82 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18184586 JRNL DOI 10.1016/J.STR.2007.10.020 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 44555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28000 REMARK 3 B22 (A**2) : 2.54000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.308 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3978 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2740 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5385 ; 1.281 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6706 ; 0.886 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 520 ; 5.862 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;34.317 ;23.580 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;14.829 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;11.271 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4393 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 784 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 881 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3002 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1945 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2117 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 297 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.052 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.298 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2575 ; 0.696 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1031 ; 0.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4015 ; 1.080 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1564 ; 1.908 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1356 ; 2.775 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 479 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2700 7.3950 16.2010 REMARK 3 T TENSOR REMARK 3 T11: -0.1977 T22: -0.0661 REMARK 3 T33: -0.0850 T12: -0.0270 REMARK 3 T13: -0.0152 T23: 0.1263 REMARK 3 L TENSOR REMARK 3 L11: 3.0949 L22: 1.6739 REMARK 3 L33: 2.2421 L12: -0.0519 REMARK 3 L13: -0.0871 L23: 0.1799 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.6310 S13: -0.4859 REMARK 3 S21: 0.1427 S22: -0.0816 S23: 0.1207 REMARK 3 S31: 0.1160 S32: 0.0456 S33: 0.1036 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 223 B 480 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7790 6.3740 -15.3500 REMARK 3 T TENSOR REMARK 3 T11: -0.1942 T22: -0.0629 REMARK 3 T33: -0.0862 T12: 0.0370 REMARK 3 T13: -0.0224 T23: -0.1338 REMARK 3 L TENSOR REMARK 3 L11: 2.8471 L22: 1.6492 REMARK 3 L33: 2.1634 L12: -0.3192 REMARK 3 L13: 0.0965 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: 0.6170 S13: -0.4674 REMARK 3 S21: -0.1367 S22: -0.1478 S23: -0.0462 REMARK 3 S31: 0.1046 S32: -0.0146 S33: 0.0849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QCC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46969 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.00950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.77250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.95600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.77250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.00950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.95600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 221 REMARK 465 ALA A 222 REMARK 465 MET A 223 REMARK 465 GLY A 424 REMARK 465 GLY A 425 REMARK 465 ASP A 426 REMARK 465 ASN A 427 REMARK 465 LEU A 428 REMARK 465 GLY A 429 REMARK 465 GLN A 430 REMARK 465 GLN A 431 REMARK 465 VAL A 480 REMARK 465 GLY B 221 REMARK 465 GLY B 424 REMARK 465 GLY B 425 REMARK 465 ASP B 426 REMARK 465 ASN B 427 REMARK 465 LEU B 428 REMARK 465 GLY B 429 REMARK 465 GLN B 430 REMARK 465 GLN B 431 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 423 CA C O CB REMARK 470 ALA B 423 CA C O CB REMARK 470 VAL B 480 CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 306 68.29 64.07 REMARK 500 ALA A 316 -5.12 -140.11 REMARK 500 ALA A 378 86.70 -61.31 REMARK 500 THR A 379 -179.37 -69.31 REMARK 500 LEU A 478 -71.91 -70.87 REMARK 500 GLU B 306 72.40 64.40 REMARK 500 ALA B 316 -0.15 -144.04 REMARK 500 LYS B 332 57.61 38.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 482 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V30 RELATED DB: PDB REMARK 900 RELATED ID: 2JGY RELATED DB: PDB DBREF 2QCC A 224 480 UNP P11172 PYR5_HUMAN 224 480 DBREF 2QCC B 224 480 UNP P11172 PYR5_HUMAN 224 480 SEQADV 2QCC GLY A 221 UNP P11172 EXPRESSION TAG SEQADV 2QCC ALA A 222 UNP P11172 EXPRESSION TAG SEQADV 2QCC MET A 223 UNP P11172 EXPRESSION TAG SEQADV 2QCC GLY B 221 UNP P11172 EXPRESSION TAG SEQADV 2QCC ALA B 222 UNP P11172 EXPRESSION TAG SEQADV 2QCC MET B 223 UNP P11172 EXPRESSION TAG SEQRES 1 A 260 GLY ALA MET GLU LEU SER PHE GLY ALA ARG ALA GLU LEU SEQRES 2 A 260 PRO ARG ILE HIS PRO VAL ALA SER LYS LEU LEU ARG LEU SEQRES 3 A 260 MET GLN LYS LYS GLU THR ASN LEU CYS LEU SER ALA ASP SEQRES 4 A 260 VAL SER LEU ALA ARG GLU LEU LEU GLN LEU ALA ASP ALA SEQRES 5 A 260 LEU GLY PRO SER ILE CYS MET LEU LYS THR HIS VAL ASP SEQRES 6 A 260 ILE LEU ASN ASP PHE THR LEU ASP VAL MET LYS GLU LEU SEQRES 7 A 260 ILE THR LEU ALA LYS CYS HIS GLU PHE LEU ILE PHE GLU SEQRES 8 A 260 ASP ARG LYS PHE ALA ASP ILE GLY ASN THR VAL LYS LYS SEQRES 9 A 260 GLN TYR GLU GLY GLY ILE PHE LYS ILE ALA SER TRP ALA SEQRES 10 A 260 ASP LEU VAL ASN ALA HIS VAL VAL PRO GLY SER GLY VAL SEQRES 11 A 260 VAL LYS GLY LEU GLN GLU VAL GLY LEU PRO LEU HIS ARG SEQRES 12 A 260 GLY CYS LEU LEU ILE ALA GLU MET SER SER THR GLY SER SEQRES 13 A 260 LEU ALA THR GLY ASP TYR THR ARG ALA ALA VAL ARG MET SEQRES 14 A 260 ALA GLU GLU HIS SER GLU PHE VAL VAL GLY PHE ILE SER SEQRES 15 A 260 GLY SER ARG VAL SER MET LYS PRO GLU PHE LEU HIS LEU SEQRES 16 A 260 THR PRO GLY VAL GLN LEU GLU ALA GLY GLY ASP ASN LEU SEQRES 17 A 260 GLY GLN GLN TYR ASN SER PRO GLN GLU VAL ILE GLY LYS SEQRES 18 A 260 ARG GLY SER ASP ILE ILE ILE VAL GLY ARG GLY ILE ILE SEQRES 19 A 260 SER ALA ALA ASP ARG LEU GLU ALA ALA GLU MET TYR ARG SEQRES 20 A 260 LYS ALA ALA TRP GLU ALA TYR LEU SER ARG LEU GLY VAL SEQRES 1 B 260 GLY ALA MET GLU LEU SER PHE GLY ALA ARG ALA GLU LEU SEQRES 2 B 260 PRO ARG ILE HIS PRO VAL ALA SER LYS LEU LEU ARG LEU SEQRES 3 B 260 MET GLN LYS LYS GLU THR ASN LEU CYS LEU SER ALA ASP SEQRES 4 B 260 VAL SER LEU ALA ARG GLU LEU LEU GLN LEU ALA ASP ALA SEQRES 5 B 260 LEU GLY PRO SER ILE CYS MET LEU LYS THR HIS VAL ASP SEQRES 6 B 260 ILE LEU ASN ASP PHE THR LEU ASP VAL MET LYS GLU LEU SEQRES 7 B 260 ILE THR LEU ALA LYS CYS HIS GLU PHE LEU ILE PHE GLU SEQRES 8 B 260 ASP ARG LYS PHE ALA ASP ILE GLY ASN THR VAL LYS LYS SEQRES 9 B 260 GLN TYR GLU GLY GLY ILE PHE LYS ILE ALA SER TRP ALA SEQRES 10 B 260 ASP LEU VAL ASN ALA HIS VAL VAL PRO GLY SER GLY VAL SEQRES 11 B 260 VAL LYS GLY LEU GLN GLU VAL GLY LEU PRO LEU HIS ARG SEQRES 12 B 260 GLY CYS LEU LEU ILE ALA GLU MET SER SER THR GLY SER SEQRES 13 B 260 LEU ALA THR GLY ASP TYR THR ARG ALA ALA VAL ARG MET SEQRES 14 B 260 ALA GLU GLU HIS SER GLU PHE VAL VAL GLY PHE ILE SER SEQRES 15 B 260 GLY SER ARG VAL SER MET LYS PRO GLU PHE LEU HIS LEU SEQRES 16 B 260 THR PRO GLY VAL GLN LEU GLU ALA GLY GLY ASP ASN LEU SEQRES 17 B 260 GLY GLN GLN TYR ASN SER PRO GLN GLU VAL ILE GLY LYS SEQRES 18 B 260 ARG GLY SER ASP ILE ILE ILE VAL GLY ARG GLY ILE ILE SEQRES 19 B 260 SER ALA ALA ASP ARG LEU GLU ALA ALA GLU MET TYR ARG SEQRES 20 B 260 LYS ALA ALA TRP GLU ALA TYR LEU SER ARG LEU GLY VAL HET SO4 A 481 5 HET GOL A 482 6 HET SO4 B 481 5 HET GOL B 482 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *305(H2 O) HELIX 1 1 SER A 226 ALA A 231 1 6 HELIX 2 2 HIS A 237 GLU A 251 1 15 HELIX 3 3 LEU A 262 GLY A 274 1 13 HELIX 4 4 PRO A 275 ILE A 277 5 3 HELIX 5 5 HIS A 283 LEU A 287 5 5 HELIX 6 6 THR A 291 GLU A 306 1 16 HELIX 7 7 ILE A 318 GLY A 328 1 11 HELIX 8 8 LYS A 332 ALA A 337 1 6 HELIX 9 9 SER A 348 LEU A 359 1 12 HELIX 10 10 THR A 379 HIS A 393 1 15 HELIX 11 11 SER A 434 GLY A 440 1 7 HELIX 12 12 GLY A 450 SER A 455 1 6 HELIX 13 13 ASP A 458 GLY A 479 1 22 HELIX 14 14 SER B 226 ALA B 231 1 6 HELIX 15 15 HIS B 237 GLU B 251 1 15 HELIX 16 16 LEU B 262 GLY B 274 1 13 HELIX 17 17 PRO B 275 ILE B 277 5 3 HELIX 18 18 HIS B 283 LEU B 287 5 5 HELIX 19 19 THR B 291 GLU B 306 1 16 HELIX 20 20 ILE B 318 GLY B 328 1 11 HELIX 21 21 LYS B 332 TRP B 336 5 5 HELIX 22 22 SER B 348 LEU B 359 1 12 HELIX 23 23 THR B 379 HIS B 393 1 15 HELIX 24 24 SER B 434 GLY B 440 1 7 HELIX 25 25 GLY B 450 SER B 455 1 6 HELIX 26 26 ASP B 458 LEU B 478 1 21 SHEET 1 A 9 LEU A 254 SER A 257 0 SHEET 2 A 9 MET A 279 THR A 282 1 O LYS A 281 N LEU A 256 SHEET 3 A 9 LEU A 308 PHE A 315 1 O PHE A 310 N LEU A 280 SHEET 4 A 9 LEU A 339 HIS A 343 1 O HIS A 343 N PHE A 315 SHEET 5 A 9 GLY A 364 ILE A 368 1 O ILE A 368 N ALA A 342 SHEET 6 A 9 VAL A 397 ILE A 401 1 O VAL A 398 N CYS A 365 SHEET 7 A 9 LEU A 413 THR A 416 1 O LEU A 415 N PHE A 400 SHEET 8 A 9 ILE A 446 VAL A 449 1 O ILE A 446 N THR A 416 SHEET 9 A 9 LEU A 254 SER A 257 1 N CYS A 255 O ILE A 447 SHEET 1 B 9 LEU B 254 SER B 257 0 SHEET 2 B 9 MET B 279 THR B 282 1 O LYS B 281 N LEU B 256 SHEET 3 B 9 LEU B 308 PHE B 315 1 O LEU B 308 N LEU B 280 SHEET 4 B 9 LEU B 339 HIS B 343 1 O HIS B 343 N PHE B 315 SHEET 5 B 9 GLY B 364 ILE B 368 1 O ILE B 368 N ALA B 342 SHEET 6 B 9 VAL B 397 ILE B 401 1 O VAL B 398 N CYS B 365 SHEET 7 B 9 LEU B 413 THR B 416 1 O LEU B 415 N PHE B 400 SHEET 8 B 9 ILE B 446 VAL B 449 1 O ILE B 446 N THR B 416 SHEET 9 B 9 LEU B 254 SER B 257 1 N CYS B 255 O ILE B 447 SITE 1 AC1 6 TYR A 432 GLY A 450 ARG A 451 GOL A 482 SITE 2 AC1 6 HOH A 562 HOH A 597 SITE 1 AC2 8 TYR B 432 GLY B 450 ARG B 451 GOL B 482 SITE 2 AC2 8 HOH B 512 HOH B 519 HOH B 584 HOH B 600 SITE 1 AC3 8 SER A 257 ASP A 259 LYS A 281 HIS A 283 SITE 2 AC3 8 ILE A 448 SO4 A 481 ASP B 317 THR B 321 SITE 1 AC4 9 ASP A 317 THR A 321 HOH A 630 SER B 257 SITE 2 AC4 9 ASP B 259 LYS B 281 HIS B 283 ASP B 312 SITE 3 AC4 9 SO4 B 481 CRYST1 62.019 75.912 119.545 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016124 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008365 0.00000