data_2QCP # _entry.id 2QCP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QCP pdb_00002qcp 10.2210/pdb2qcp/pdb RCSB RCSB043433 ? ? WWPDB D_1000043433 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1zeq _pdbx_database_related.details 'apo-CusF residues 6-88' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2QCP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-06-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Loftin, I.R.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Unusual Cu(I)/Ag(I) coordination of Escherichia coli CusF as revealed by atomic resolution crystallography and X-ray absorption spectroscopy ; _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 16 _citation.page_first 2287 _citation.page_last 2293 _citation.year 2007 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17893365 _citation.pdbx_database_id_DOI 10.1110/ps.073021307 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Loftin, I.R.' 1 ? primary 'Franke, S.' 2 ? primary 'Blackburn, N.J.' 3 ? primary 'McEvoy, M.M.' 4 ? # _cell.length_a 38.118 _cell.length_b 39.351 _cell.length_c 44.423 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2QCP _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 2QCP _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cation efflux system protein cusF' 8891.271 1 ? ? 'sequence database residues 32-110' ? 2 non-polymer syn 'NITRATE ION' 62.005 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 non-polymer syn 'SILVER ION' 107.868 1 ? ? ? ? 5 water nat water 18.015 93 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ _entity_poly.pdbx_seq_one_letter_code_can MEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 ALA n 1 4 GLN n 1 5 PRO n 1 6 GLN n 1 7 VAL n 1 8 ILE n 1 9 SER n 1 10 ALA n 1 11 THR n 1 12 GLY n 1 13 VAL n 1 14 VAL n 1 15 LYS n 1 16 GLY n 1 17 ILE n 1 18 ASP n 1 19 LEU n 1 20 GLU n 1 21 SER n 1 22 LYS n 1 23 LYS n 1 24 ILE n 1 25 THR n 1 26 ILE n 1 27 HIS n 1 28 HIS n 1 29 ASP n 1 30 PRO n 1 31 ILE n 1 32 ALA n 1 33 ALA n 1 34 VAL n 1 35 ASN n 1 36 TRP n 1 37 PRO n 1 38 GLU n 1 39 MET n 1 40 THR n 1 41 MET n 1 42 ARG n 1 43 PHE n 1 44 THR n 1 45 ILE n 1 46 THR n 1 47 PRO n 1 48 GLN n 1 49 THR n 1 50 LYS n 1 51 MET n 1 52 SER n 1 53 GLU n 1 54 ILE n 1 55 LYS n 1 56 THR n 1 57 GLY n 1 58 ASP n 1 59 LYS n 1 60 VAL n 1 61 ALA n 1 62 PHE n 1 63 ASN n 1 64 PHE n 1 65 VAL n 1 66 GLN n 1 67 GLN n 1 68 GLY n 1 69 ASN n 1 70 LEU n 1 71 SER n 1 72 LEU n 1 73 LEU n 1 74 GLN n 1 75 ASP n 1 76 ILE n 1 77 LYS n 1 78 VAL n 1 79 SER n 1 80 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene 'cusF, cusX' _entity_src_gen.gene_src_species 'Escherichia coli' _entity_src_gen.gene_src_strain W3110 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli str. K12 substr.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 316407 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Bl21-DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPR-IBA1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CUSF_ECOLI _struct_ref.pdbx_db_accession P77214 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ _struct_ref.pdbx_align_begin 32 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QCP _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 80 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P77214 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 110 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 10 _struct_ref_seq.pdbx_auth_seq_align_end 88 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2QCP _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id X _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P77214 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 9 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2QCP _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.87 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 34.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;100 mM sodium acetate trihydrate (pH 4.6), 2.3 M ammonium sulfate, 2 mM silver nitrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2006-07-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97946 _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 # _reflns.entry_id 2QCP _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.00 _reflns.d_resolution_low 19.7 _reflns.number_all 35956 _reflns.number_obs 35956 _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 97.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.52 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.00 _reflns_shell.d_res_low 1.04 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 95.6 _reflns_shell.Rmerge_I_obs 0.383 _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 5.09 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QCP _refine.ls_d_res_high 1.000 _refine.ls_d_res_low 19.680 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.710 _refine.ls_number_reflns_obs 34150 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.160 _refine.ls_R_factor_R_work 0.159 _refine.ls_R_factor_R_free 0.186 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1806 _refine.B_iso_mean 9.378 _refine.aniso_B[1][1] -0.100 _refine.aniso_B[2][2] 0.000 _refine.aniso_B[3][3] 0.100 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.pdbx_overall_ESU_R 0.029 _refine.pdbx_overall_ESU_R_Free 0.030 _refine.overall_SU_ML 0.020 _refine.overall_SU_B 0.819 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 34150 _refine.ls_R_factor_all 0.160 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 1ZEQ' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Anisotropic _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 622 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 734 _refine_hist.d_res_high 1.000 _refine_hist.d_res_low 19.680 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 782 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 520 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1089 1.957 1.977 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1329 0.925 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 117 7.490 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31 48.331 27.097 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 161 13.806 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 1 12.901 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 129 0.107 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 881 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 127 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 123 0.221 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 523 0.186 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 362 0.162 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 404 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 51 0.121 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 27 0.229 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 38 0.312 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 12 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 647 3.218 10.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 182 2.744 10.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 805 3.702 10.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 335 4.644 10.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 266 6.277 10.000 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1563 2.100 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 95 8.928 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 1273 4.636 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.000 _refine_ls_shell.d_res_low 1.026 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.630 _refine_ls_shell.number_reflns_R_work 2416 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.298 _refine_ls_shell.R_factor_R_free 0.339 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 147 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 2563 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QCP _struct.title '1.0 A Structure of CusF-Ag(I) residues 10-88 from Escherichia coli' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QCP _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text ;silver-binding, copper-binding, beta barrel, OB-fold, metalloprotein, metal resistance, Metal-binding, Periplasmic, METAL BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ILE _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 31 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 35 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ILE _struct_conf.beg_auth_asym_id X _struct_conf.beg_auth_seq_id 39 _struct_conf.end_auth_comp_id ASN _struct_conf.end_auth_asym_id X _struct_conf.end_auth_seq_id 43 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 50 ? MET A 51 ? LYS X 58 MET X 59 A 2 LEU A 70 ? VAL A 78 ? LEU X 78 VAL X 86 A 3 LYS A 59 ? GLN A 67 ? LYS X 67 GLN X 75 A 4 ILE A 8 ? ASP A 18 ? ILE X 16 ASP X 26 A 5 LYS A 23 ? HIS A 28 ? LYS X 31 HIS X 36 A 6 MET A 39 ? THR A 44 ? MET X 47 THR X 52 A 7 LEU A 70 ? VAL A 78 ? LEU X 78 VAL X 86 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 50 ? N LYS X 58 O GLN A 74 ? O GLN X 82 A 2 3 O GLN A 74 ? O GLN X 82 N ASN A 63 ? N ASN X 71 A 3 4 O PHE A 64 ? O PHE X 72 N ILE A 8 ? N ILE X 16 A 4 5 N ASP A 18 ? N ASP X 26 O LYS A 23 ? O LYS X 31 A 5 6 N ILE A 24 ? N ILE X 32 O PHE A 43 ? O PHE X 51 A 6 7 N THR A 44 ? N THR X 52 O SER A 71 ? O SER X 79 # _atom_sites.entry_id 2QCP _atom_sites.fract_transf_matrix[1][1] 0.026235 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025412 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022511 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol AG C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 9 9 MET MET X . n A 1 2 GLU 2 10 10 GLU GLU X . n A 1 3 ALA 3 11 11 ALA ALA X . n A 1 4 GLN 4 12 12 GLN GLN X . n A 1 5 PRO 5 13 13 PRO PRO X . n A 1 6 GLN 6 14 14 GLN GLN X . n A 1 7 VAL 7 15 15 VAL VAL X . n A 1 8 ILE 8 16 16 ILE ILE X . n A 1 9 SER 9 17 17 SER SER X . n A 1 10 ALA 10 18 18 ALA ALA X . n A 1 11 THR 11 19 19 THR THR X . n A 1 12 GLY 12 20 20 GLY GLY X . n A 1 13 VAL 13 21 21 VAL VAL X . n A 1 14 VAL 14 22 22 VAL VAL X . n A 1 15 LYS 15 23 23 LYS LYS X . n A 1 16 GLY 16 24 24 GLY GLY X . n A 1 17 ILE 17 25 25 ILE ILE X . n A 1 18 ASP 18 26 26 ASP ASP X . n A 1 19 LEU 19 27 27 LEU LEU X . n A 1 20 GLU 20 28 28 GLU GLU X . n A 1 21 SER 21 29 29 SER SER X . n A 1 22 LYS 22 30 30 LYS LYS X . n A 1 23 LYS 23 31 31 LYS LYS X . n A 1 24 ILE 24 32 32 ILE ILE X . n A 1 25 THR 25 33 33 THR THR X . n A 1 26 ILE 26 34 34 ILE ILE X . n A 1 27 HIS 27 35 35 HIS HIS X . n A 1 28 HIS 28 36 36 HIS HIS X . n A 1 29 ASP 29 37 37 ASP ASP X . n A 1 30 PRO 30 38 38 PRO PRO X . n A 1 31 ILE 31 39 39 ILE ILE X . n A 1 32 ALA 32 40 40 ALA ALA X . n A 1 33 ALA 33 41 41 ALA ALA X . n A 1 34 VAL 34 42 42 VAL VAL X . n A 1 35 ASN 35 43 43 ASN ASN X . n A 1 36 TRP 36 44 44 TRP TRP X . n A 1 37 PRO 37 45 45 PRO PRO X . n A 1 38 GLU 38 46 46 GLU GLU X . n A 1 39 MET 39 47 47 MET MET X . n A 1 40 THR 40 48 48 THR THR X . n A 1 41 MET 41 49 49 MET MET X . n A 1 42 ARG 42 50 50 ARG ARG X . n A 1 43 PHE 43 51 51 PHE PHE X . n A 1 44 THR 44 52 52 THR THR X . n A 1 45 ILE 45 53 53 ILE ILE X . n A 1 46 THR 46 54 54 THR THR X . n A 1 47 PRO 47 55 55 PRO PRO X . n A 1 48 GLN 48 56 56 GLN GLN X . n A 1 49 THR 49 57 57 THR THR X . n A 1 50 LYS 50 58 58 LYS LYS X . n A 1 51 MET 51 59 59 MET MET X . n A 1 52 SER 52 60 60 SER SER X . n A 1 53 GLU 53 61 61 GLU GLU X . n A 1 54 ILE 54 62 62 ILE ILE X . n A 1 55 LYS 55 63 63 LYS LYS X . n A 1 56 THR 56 64 64 THR THR X . n A 1 57 GLY 57 65 65 GLY GLY X . n A 1 58 ASP 58 66 66 ASP ASP X . n A 1 59 LYS 59 67 67 LYS LYS X . n A 1 60 VAL 60 68 68 VAL VAL X . n A 1 61 ALA 61 69 69 ALA ALA X . n A 1 62 PHE 62 70 70 PHE PHE X . n A 1 63 ASN 63 71 71 ASN ASN X . n A 1 64 PHE 64 72 72 PHE PHE X . n A 1 65 VAL 65 73 73 VAL VAL X . n A 1 66 GLN 66 74 74 GLN GLN X . n A 1 67 GLN 67 75 75 GLN GLN X . n A 1 68 GLY 68 76 76 GLY GLY X . n A 1 69 ASN 69 77 77 ASN ASN X . n A 1 70 LEU 70 78 78 LEU LEU X . n A 1 71 SER 71 79 79 SER SER X . n A 1 72 LEU 72 80 80 LEU LEU X . n A 1 73 LEU 73 81 81 LEU LEU X . n A 1 74 GLN 74 82 82 GLN GLN X . n A 1 75 ASP 75 83 83 ASP ASP X . n A 1 76 ILE 76 84 84 ILE ILE X . n A 1 77 LYS 77 85 85 LYS LYS X . n A 1 78 VAL 78 86 86 VAL VAL X . n A 1 79 SER 79 87 87 SER SER X . n A 1 80 GLN 80 88 88 GLN GLN X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 1 1 1 NO3 NO3 X . C 3 SO4 1 2 2 SO4 SO4 X . D 2 NO3 1 3 3 NO3 NO3 X . E 3 SO4 1 4 4 SO4 SO4 X . F 4 AG 1 89 1 AG AG X . G 5 HOH 1 90 2 HOH HOH X . G 5 HOH 2 91 3 HOH HOH X . G 5 HOH 3 92 4 HOH HOH X . G 5 HOH 4 93 5 HOH HOH X . G 5 HOH 5 94 6 HOH HOH X . G 5 HOH 6 95 7 HOH HOH X . G 5 HOH 7 96 8 HOH HOH X . G 5 HOH 8 97 11 HOH HOH X . G 5 HOH 9 98 12 HOH HOH X . G 5 HOH 10 99 13 HOH HOH X . G 5 HOH 11 100 14 HOH HOH X . G 5 HOH 12 101 15 HOH HOH X . G 5 HOH 13 102 16 HOH HOH X . G 5 HOH 14 103 17 HOH HOH X . G 5 HOH 15 104 18 HOH HOH X . G 5 HOH 16 105 19 HOH HOH X . G 5 HOH 17 106 20 HOH HOH X . G 5 HOH 18 107 21 HOH HOH X . G 5 HOH 19 108 22 HOH HOH X . G 5 HOH 20 109 23 HOH HOH X . G 5 HOH 21 110 24 HOH HOH X . G 5 HOH 22 111 25 HOH HOH X . G 5 HOH 23 112 26 HOH HOH X . G 5 HOH 24 113 27 HOH HOH X . G 5 HOH 25 114 28 HOH HOH X . G 5 HOH 26 115 29 HOH HOH X . G 5 HOH 27 116 30 HOH HOH X . G 5 HOH 28 117 31 HOH HOH X . G 5 HOH 29 118 32 HOH HOH X . G 5 HOH 30 119 33 HOH HOH X . G 5 HOH 31 120 34 HOH HOH X . G 5 HOH 32 121 35 HOH HOH X . G 5 HOH 33 122 36 HOH HOH X . G 5 HOH 34 123 37 HOH HOH X . G 5 HOH 35 124 38 HOH HOH X . G 5 HOH 36 125 39 HOH HOH X . G 5 HOH 37 126 40 HOH HOH X . G 5 HOH 38 127 41 HOH HOH X . G 5 HOH 39 128 42 HOH HOH X . G 5 HOH 40 129 43 HOH HOH X . G 5 HOH 41 130 44 HOH HOH X . G 5 HOH 42 131 45 HOH HOH X . G 5 HOH 43 132 46 HOH HOH X . G 5 HOH 44 133 47 HOH HOH X . G 5 HOH 45 134 48 HOH HOH X . G 5 HOH 46 135 49 HOH HOH X . G 5 HOH 47 136 50 HOH HOH X . G 5 HOH 48 137 51 HOH HOH X . G 5 HOH 49 138 52 HOH HOH X . G 5 HOH 50 139 53 HOH HOH X . G 5 HOH 51 140 54 HOH HOH X . G 5 HOH 52 141 55 HOH HOH X . G 5 HOH 53 142 56 HOH HOH X . G 5 HOH 54 143 57 HOH HOH X . G 5 HOH 55 144 58 HOH HOH X . G 5 HOH 56 145 59 HOH HOH X . G 5 HOH 57 146 60 HOH HOH X . G 5 HOH 58 147 61 HOH HOH X . G 5 HOH 59 148 63 HOH HOH X . G 5 HOH 60 149 64 HOH HOH X . G 5 HOH 61 150 65 HOH HOH X . G 5 HOH 62 151 66 HOH HOH X . G 5 HOH 63 152 67 HOH HOH X . G 5 HOH 64 153 68 HOH HOH X . G 5 HOH 65 154 69 HOH HOH X . G 5 HOH 66 155 70 HOH HOH X . G 5 HOH 67 156 73 HOH HOH X . G 5 HOH 68 157 74 HOH HOH X . G 5 HOH 69 158 75 HOH HOH X . G 5 HOH 70 159 76 HOH HOH X . G 5 HOH 71 160 77 HOH HOH X . G 5 HOH 72 161 78 HOH HOH X . G 5 HOH 73 162 79 HOH HOH X . G 5 HOH 74 163 81 HOH HOH X . G 5 HOH 75 164 82 HOH HOH X . G 5 HOH 76 165 83 HOH HOH X . G 5 HOH 77 166 84 HOH HOH X . G 5 HOH 78 167 85 HOH HOH X . G 5 HOH 79 168 86 HOH HOH X . G 5 HOH 80 169 87 HOH HOH X . G 5 HOH 81 170 88 HOH HOH X . G 5 HOH 82 171 89 HOH HOH X . G 5 HOH 83 172 90 HOH HOH X . G 5 HOH 84 173 91 HOH HOH X . G 5 HOH 85 174 93 HOH HOH X . G 5 HOH 86 175 94 HOH HOH X . G 5 HOH 87 176 95 HOH HOH X . G 5 HOH 88 177 96 HOH HOH X . G 5 HOH 89 178 97 HOH HOH X . G 5 HOH 90 179 98 HOH HOH X . G 5 HOH 91 180 99 HOH HOH X . G 5 HOH 92 181 100 HOH HOH X . G 5 HOH 93 182 101 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_phasing_MR.entry_id 2QCP _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.380 _pdbx_phasing_MR.d_res_low_rotation 29.450 _pdbx_phasing_MR.d_res_high_translation 1.380 _pdbx_phasing_MR.d_res_low_translation 29.450 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 1 MOLREP . ? other 'A. Vagin' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 5 CrystalClear . ? ? ? ? 'data reduction' ? ? ? 6 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 MET _pdbx_validate_peptide_omega.auth_asym_id_1 X _pdbx_validate_peptide_omega.auth_seq_id_1 59 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 B _pdbx_validate_peptide_omega.auth_comp_id_2 SER _pdbx_validate_peptide_omega.auth_asym_id_2 X _pdbx_validate_peptide_omega.auth_seq_id_2 60 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 149.68 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AG AG AG N N 1 ALA N N N N 2 ALA CA C N S 3 ALA C C N N 4 ALA O O N N 5 ALA CB C N N 6 ALA OXT O N N 7 ALA H H N N 8 ALA H2 H N N 9 ALA HA H N N 10 ALA HB1 H N N 11 ALA HB2 H N N 12 ALA HB3 H N N 13 ALA HXT H N N 14 ARG N N N N 15 ARG CA C N S 16 ARG C C N N 17 ARG O O N N 18 ARG CB C N N 19 ARG CG C N N 20 ARG CD C N N 21 ARG NE N N N 22 ARG CZ C N N 23 ARG NH1 N N N 24 ARG NH2 N N N 25 ARG OXT O N N 26 ARG H H N N 27 ARG H2 H N N 28 ARG HA H N N 29 ARG HB2 H N N 30 ARG HB3 H N N 31 ARG HG2 H N N 32 ARG HG3 H N N 33 ARG HD2 H N N 34 ARG HD3 H N N 35 ARG HE H N N 36 ARG HH11 H N N 37 ARG HH12 H N N 38 ARG HH21 H N N 39 ARG HH22 H N N 40 ARG HXT H N N 41 ASN N N N N 42 ASN CA C N S 43 ASN C C N N 44 ASN O O N N 45 ASN CB C N N 46 ASN CG C N N 47 ASN OD1 O N N 48 ASN ND2 N N N 49 ASN OXT O N N 50 ASN H H N N 51 ASN H2 H N N 52 ASN HA H N N 53 ASN HB2 H N N 54 ASN HB3 H N N 55 ASN HD21 H N N 56 ASN HD22 H N N 57 ASN HXT H N N 58 ASP N N N N 59 ASP CA C N S 60 ASP C C N N 61 ASP O O N N 62 ASP CB C N N 63 ASP CG C N N 64 ASP OD1 O N N 65 ASP OD2 O N N 66 ASP OXT O N N 67 ASP H H N N 68 ASP H2 H N N 69 ASP HA H N N 70 ASP HB2 H N N 71 ASP HB3 H N N 72 ASP HD2 H N N 73 ASP HXT H N N 74 GLN N N N N 75 GLN CA C N S 76 GLN C C N N 77 GLN O O N N 78 GLN CB C N N 79 GLN CG C N N 80 GLN CD C N N 81 GLN OE1 O N N 82 GLN NE2 N N N 83 GLN OXT O N N 84 GLN H H N N 85 GLN H2 H N N 86 GLN HA H N N 87 GLN HB2 H N N 88 GLN HB3 H N N 89 GLN HG2 H N N 90 GLN HG3 H N N 91 GLN HE21 H N N 92 GLN HE22 H N N 93 GLN HXT H N N 94 GLU N N N N 95 GLU CA C N S 96 GLU C C N N 97 GLU O O N N 98 GLU CB C N N 99 GLU CG C N N 100 GLU CD C N N 101 GLU OE1 O N N 102 GLU OE2 O N N 103 GLU OXT O N N 104 GLU H H N N 105 GLU H2 H N N 106 GLU HA H N N 107 GLU HB2 H N N 108 GLU HB3 H N N 109 GLU HG2 H N N 110 GLU HG3 H N N 111 GLU HE2 H N N 112 GLU HXT H N N 113 GLY N N N N 114 GLY CA C N N 115 GLY C C N N 116 GLY O O N N 117 GLY OXT O N N 118 GLY H H N N 119 GLY H2 H N N 120 GLY HA2 H N N 121 GLY HA3 H N N 122 GLY HXT H N N 123 HIS N N N N 124 HIS CA C N S 125 HIS C C N N 126 HIS O O N N 127 HIS CB C N N 128 HIS CG C Y N 129 HIS ND1 N Y N 130 HIS CD2 C Y N 131 HIS CE1 C Y N 132 HIS NE2 N Y N 133 HIS OXT O N N 134 HIS H H N N 135 HIS H2 H N N 136 HIS HA H N N 137 HIS HB2 H N N 138 HIS HB3 H N N 139 HIS HD1 H N N 140 HIS HD2 H N N 141 HIS HE1 H N N 142 HIS HE2 H N N 143 HIS HXT H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 ILE N N N N 148 ILE CA C N S 149 ILE C C N N 150 ILE O O N N 151 ILE CB C N S 152 ILE CG1 C N N 153 ILE CG2 C N N 154 ILE CD1 C N N 155 ILE OXT O N N 156 ILE H H N N 157 ILE H2 H N N 158 ILE HA H N N 159 ILE HB H N N 160 ILE HG12 H N N 161 ILE HG13 H N N 162 ILE HG21 H N N 163 ILE HG22 H N N 164 ILE HG23 H N N 165 ILE HD11 H N N 166 ILE HD12 H N N 167 ILE HD13 H N N 168 ILE HXT H N N 169 LEU N N N N 170 LEU CA C N S 171 LEU C C N N 172 LEU O O N N 173 LEU CB C N N 174 LEU CG C N N 175 LEU CD1 C N N 176 LEU CD2 C N N 177 LEU OXT O N N 178 LEU H H N N 179 LEU H2 H N N 180 LEU HA H N N 181 LEU HB2 H N N 182 LEU HB3 H N N 183 LEU HG H N N 184 LEU HD11 H N N 185 LEU HD12 H N N 186 LEU HD13 H N N 187 LEU HD21 H N N 188 LEU HD22 H N N 189 LEU HD23 H N N 190 LEU HXT H N N 191 LYS N N N N 192 LYS CA C N S 193 LYS C C N N 194 LYS O O N N 195 LYS CB C N N 196 LYS CG C N N 197 LYS CD C N N 198 LYS CE C N N 199 LYS NZ N N N 200 LYS OXT O N N 201 LYS H H N N 202 LYS H2 H N N 203 LYS HA H N N 204 LYS HB2 H N N 205 LYS HB3 H N N 206 LYS HG2 H N N 207 LYS HG3 H N N 208 LYS HD2 H N N 209 LYS HD3 H N N 210 LYS HE2 H N N 211 LYS HE3 H N N 212 LYS HZ1 H N N 213 LYS HZ2 H N N 214 LYS HZ3 H N N 215 LYS HXT H N N 216 MET N N N N 217 MET CA C N S 218 MET C C N N 219 MET O O N N 220 MET CB C N N 221 MET CG C N N 222 MET SD S N N 223 MET CE C N N 224 MET OXT O N N 225 MET H H N N 226 MET H2 H N N 227 MET HA H N N 228 MET HB2 H N N 229 MET HB3 H N N 230 MET HG2 H N N 231 MET HG3 H N N 232 MET HE1 H N N 233 MET HE2 H N N 234 MET HE3 H N N 235 MET HXT H N N 236 NO3 N N N N 237 NO3 O1 O N N 238 NO3 O2 O N N 239 NO3 O3 O N N 240 PHE N N N N 241 PHE CA C N S 242 PHE C C N N 243 PHE O O N N 244 PHE CB C N N 245 PHE CG C Y N 246 PHE CD1 C Y N 247 PHE CD2 C Y N 248 PHE CE1 C Y N 249 PHE CE2 C Y N 250 PHE CZ C Y N 251 PHE OXT O N N 252 PHE H H N N 253 PHE H2 H N N 254 PHE HA H N N 255 PHE HB2 H N N 256 PHE HB3 H N N 257 PHE HD1 H N N 258 PHE HD2 H N N 259 PHE HE1 H N N 260 PHE HE2 H N N 261 PHE HZ H N N 262 PHE HXT H N N 263 PRO N N N N 264 PRO CA C N S 265 PRO C C N N 266 PRO O O N N 267 PRO CB C N N 268 PRO CG C N N 269 PRO CD C N N 270 PRO OXT O N N 271 PRO H H N N 272 PRO HA H N N 273 PRO HB2 H N N 274 PRO HB3 H N N 275 PRO HG2 H N N 276 PRO HG3 H N N 277 PRO HD2 H N N 278 PRO HD3 H N N 279 PRO HXT H N N 280 SER N N N N 281 SER CA C N S 282 SER C C N N 283 SER O O N N 284 SER CB C N N 285 SER OG O N N 286 SER OXT O N N 287 SER H H N N 288 SER H2 H N N 289 SER HA H N N 290 SER HB2 H N N 291 SER HB3 H N N 292 SER HG H N N 293 SER HXT H N N 294 SO4 S S N N 295 SO4 O1 O N N 296 SO4 O2 O N N 297 SO4 O3 O N N 298 SO4 O4 O N N 299 THR N N N N 300 THR CA C N S 301 THR C C N N 302 THR O O N N 303 THR CB C N R 304 THR OG1 O N N 305 THR CG2 C N N 306 THR OXT O N N 307 THR H H N N 308 THR H2 H N N 309 THR HA H N N 310 THR HB H N N 311 THR HG1 H N N 312 THR HG21 H N N 313 THR HG22 H N N 314 THR HG23 H N N 315 THR HXT H N N 316 TRP N N N N 317 TRP CA C N S 318 TRP C C N N 319 TRP O O N N 320 TRP CB C N N 321 TRP CG C Y N 322 TRP CD1 C Y N 323 TRP CD2 C Y N 324 TRP NE1 N Y N 325 TRP CE2 C Y N 326 TRP CE3 C Y N 327 TRP CZ2 C Y N 328 TRP CZ3 C Y N 329 TRP CH2 C Y N 330 TRP OXT O N N 331 TRP H H N N 332 TRP H2 H N N 333 TRP HA H N N 334 TRP HB2 H N N 335 TRP HB3 H N N 336 TRP HD1 H N N 337 TRP HE1 H N N 338 TRP HE3 H N N 339 TRP HZ2 H N N 340 TRP HZ3 H N N 341 TRP HH2 H N N 342 TRP HXT H N N 343 VAL N N N N 344 VAL CA C N S 345 VAL C C N N 346 VAL O O N N 347 VAL CB C N N 348 VAL CG1 C N N 349 VAL CG2 C N N 350 VAL OXT O N N 351 VAL H H N N 352 VAL H2 H N N 353 VAL HA H N N 354 VAL HB H N N 355 VAL HG11 H N N 356 VAL HG12 H N N 357 VAL HG13 H N N 358 VAL HG21 H N N 359 VAL HG22 H N N 360 VAL HG23 H N N 361 VAL HXT H N N 362 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 NO3 N O1 doub N N 224 NO3 N O2 sing N N 225 NO3 N O3 sing N N 226 PHE N CA sing N N 227 PHE N H sing N N 228 PHE N H2 sing N N 229 PHE CA C sing N N 230 PHE CA CB sing N N 231 PHE CA HA sing N N 232 PHE C O doub N N 233 PHE C OXT sing N N 234 PHE CB CG sing N N 235 PHE CB HB2 sing N N 236 PHE CB HB3 sing N N 237 PHE CG CD1 doub Y N 238 PHE CG CD2 sing Y N 239 PHE CD1 CE1 sing Y N 240 PHE CD1 HD1 sing N N 241 PHE CD2 CE2 doub Y N 242 PHE CD2 HD2 sing N N 243 PHE CE1 CZ doub Y N 244 PHE CE1 HE1 sing N N 245 PHE CE2 CZ sing Y N 246 PHE CE2 HE2 sing N N 247 PHE CZ HZ sing N N 248 PHE OXT HXT sing N N 249 PRO N CA sing N N 250 PRO N CD sing N N 251 PRO N H sing N N 252 PRO CA C sing N N 253 PRO CA CB sing N N 254 PRO CA HA sing N N 255 PRO C O doub N N 256 PRO C OXT sing N N 257 PRO CB CG sing N N 258 PRO CB HB2 sing N N 259 PRO CB HB3 sing N N 260 PRO CG CD sing N N 261 PRO CG HG2 sing N N 262 PRO CG HG3 sing N N 263 PRO CD HD2 sing N N 264 PRO CD HD3 sing N N 265 PRO OXT HXT sing N N 266 SER N CA sing N N 267 SER N H sing N N 268 SER N H2 sing N N 269 SER CA C sing N N 270 SER CA CB sing N N 271 SER CA HA sing N N 272 SER C O doub N N 273 SER C OXT sing N N 274 SER CB OG sing N N 275 SER CB HB2 sing N N 276 SER CB HB3 sing N N 277 SER OG HG sing N N 278 SER OXT HXT sing N N 279 SO4 S O1 doub N N 280 SO4 S O2 doub N N 281 SO4 S O3 sing N N 282 SO4 S O4 sing N N 283 THR N CA sing N N 284 THR N H sing N N 285 THR N H2 sing N N 286 THR CA C sing N N 287 THR CA CB sing N N 288 THR CA HA sing N N 289 THR C O doub N N 290 THR C OXT sing N N 291 THR CB OG1 sing N N 292 THR CB CG2 sing N N 293 THR CB HB sing N N 294 THR OG1 HG1 sing N N 295 THR CG2 HG21 sing N N 296 THR CG2 HG22 sing N N 297 THR CG2 HG23 sing N N 298 THR OXT HXT sing N N 299 TRP N CA sing N N 300 TRP N H sing N N 301 TRP N H2 sing N N 302 TRP CA C sing N N 303 TRP CA CB sing N N 304 TRP CA HA sing N N 305 TRP C O doub N N 306 TRP C OXT sing N N 307 TRP CB CG sing N N 308 TRP CB HB2 sing N N 309 TRP CB HB3 sing N N 310 TRP CG CD1 doub Y N 311 TRP CG CD2 sing Y N 312 TRP CD1 NE1 sing Y N 313 TRP CD1 HD1 sing N N 314 TRP CD2 CE2 doub Y N 315 TRP CD2 CE3 sing Y N 316 TRP NE1 CE2 sing Y N 317 TRP NE1 HE1 sing N N 318 TRP CE2 CZ2 sing Y N 319 TRP CE3 CZ3 doub Y N 320 TRP CE3 HE3 sing N N 321 TRP CZ2 CH2 doub Y N 322 TRP CZ2 HZ2 sing N N 323 TRP CZ3 CH2 sing Y N 324 TRP CZ3 HZ3 sing N N 325 TRP CH2 HH2 sing N N 326 TRP OXT HXT sing N N 327 VAL N CA sing N N 328 VAL N H sing N N 329 VAL N H2 sing N N 330 VAL CA C sing N N 331 VAL CA CB sing N N 332 VAL CA HA sing N N 333 VAL C O doub N N 334 VAL C OXT sing N N 335 VAL CB CG1 sing N N 336 VAL CB CG2 sing N N 337 VAL CB HB sing N N 338 VAL CG1 HG11 sing N N 339 VAL CG1 HG12 sing N N 340 VAL CG1 HG13 sing N N 341 VAL CG2 HG21 sing N N 342 VAL CG2 HG22 sing N N 343 VAL CG2 HG23 sing N N 344 VAL OXT HXT sing N N 345 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NITRATE ION' NO3 3 'SULFATE ION' SO4 4 'SILVER ION' AG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ZEQ _pdbx_initial_refinement_model.details 'PDB ENTRY 1ZEQ' #