HEADER TRANSFERASE 19-JUN-07 2QCV TITLE CRYSTAL STRUCTURE OF A PUTATIVE 5-DEHYDRO-2-DEOXYGLUCONOKINASE (IOLC) TITLE 2 FROM BACILLUS HALODURANS C-125 AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 5-DEHYDRO-2-DEOXYGLUCONOKINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS C-125; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 STRAIN: C-125, DSM 18197, FERM 7344, JCM 9153; SOURCE 5 ATCC: BAA-125; SOURCE 6 GENE: NP_243185.1, IOLC, BH2319; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE 5-DEHYDRO-2- DEOXYGLUCONOKINASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 2QCV 1 REMARK SEQADV REVDAT 7 24-JUL-19 2QCV 1 REMARK LINK REVDAT 6 25-OCT-17 2QCV 1 REMARK REVDAT 5 18-OCT-17 2QCV 1 REMARK REVDAT 4 13-JUL-11 2QCV 1 VERSN REVDAT 3 28-JUL-10 2QCV 1 TITLE KEYWDS REVDAT 2 24-FEB-09 2QCV 1 VERSN REVDAT 1 07-AUG-07 2QCV 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE JRNL TITL 2 5-DEHYDRO-2-DEOXYGLUCONOKINASE (NP_243185.1) FROM BACILLUS JRNL TITL 3 HALODURANS AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2143 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2881 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2509 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : -0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2707 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1856 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3664 ; 1.543 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4546 ; 1.037 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 5.975 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;34.727 ;24.035 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 475 ;13.232 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.047 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.184 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3006 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 545 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 500 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1940 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1310 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1410 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 187 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.239 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1815 ; 2.210 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 690 ; 0.544 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2719 ; 2.946 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1119 ; 5.640 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 934 ; 7.413 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 77.1020 22.0710 0.8500 REMARK 3 T TENSOR REMARK 3 T11: -0.0465 T22: -0.1124 REMARK 3 T33: -0.0515 T12: 0.0241 REMARK 3 T13: -0.0198 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.4431 L22: 0.6944 REMARK 3 L33: 0.3109 L12: -0.2363 REMARK 3 L13: -0.2112 L23: 0.1637 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: -0.0184 S13: -0.0330 REMARK 3 S21: -0.0238 S22: 0.0216 S23: 0.1123 REMARK 3 S31: 0.0034 S32: -0.0247 S33: 0.0219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. PGE WERE MODELED AS FRAGMENTS OF PEG-200 FROM THE REMARK 3 CRYSTALLIZATION CONDITIONS. REMARK 3 5. RESIDUES 1 AND 306-310 HAVE POOR DENSITY AND WERE NOT REMARK 3 MODELED. REMARK 3 6. THERE ARE NUMEROUS SMALL BLOBS OF DIFFERENCE DENSITY REMARK 3 THAT WERE NOT MODELED. REMARK 4 REMARK 4 2QCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42457 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.161 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.67100 REMARK 200 R SYM FOR SHELL (I) : 0.67100 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M MGCL2, 50.0% PEG 200, REMARK 280 0.1M CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.02767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.05533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.02767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.05533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 16.02767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 32.05533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 16.02767 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.05533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT REMARK 300 OF A TETRAMER AS A SIGNIFICANT OLIGOMERIZATION STATE REMARK 300 IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 194.00100 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 194.00100 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 358 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 498 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 HIS A 306 REMARK 465 SER A 307 REMARK 465 SER A 308 REMARK 465 SER A 309 REMARK 465 ASP A 310 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 59 CD CE NZ REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 GLU A 128 CD OE1 OE2 REMARK 470 ARG A 178 CZ NH1 NH2 REMARK 470 GLU A 207 CD OE1 OE2 REMARK 470 ARG A 226 NE CZ NH1 NH2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 GLU A 323 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 8 OH TYR A 255 12554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 231 -151.55 -120.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 333 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375195 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 2QCV A 1 331 UNP Q9KAG8 Q9KAG8_BACHD 1 331 SEQADV 2QCV GLY A 0 UNP Q9KAG8 EXPRESSION TAG SEQADV 2QCV MSE A 1 UNP Q9KAG8 MET 1 MODIFIED RESIDUE SEQADV 2QCV MSE A 32 UNP Q9KAG8 MET 32 MODIFIED RESIDUE SEQADV 2QCV MSE A 36 UNP Q9KAG8 MET 36 MODIFIED RESIDUE SEQADV 2QCV MSE A 79 UNP Q9KAG8 MET 79 MODIFIED RESIDUE SEQADV 2QCV MSE A 115 UNP Q9KAG8 MET 115 MODIFIED RESIDUE SEQADV 2QCV MSE A 312 UNP Q9KAG8 MET 312 MODIFIED RESIDUE SEQRES 1 A 332 GLY MSE THR TYR GLU LEU SER THR ASP ARG GLU PHE ASP SEQRES 2 A 332 LEU ILE ALA ILE GLY ARG ALA CYS ILE ASP LEU ASN ALA SEQRES 3 A 332 VAL GLU TYR ASN ARG PRO MSE GLU GLU THR MSE THR PHE SEQRES 4 A 332 SER LYS TYR VAL GLY GLY SER PRO ALA ASN ILE VAL ILE SEQRES 5 A 332 GLY SER SER LYS LEU GLY LEU LYS ALA GLY PHE ILE GLY SEQRES 6 A 332 LYS ILE ALA ASP ASP GLN HIS GLY ARG PHE ILE GLU SER SEQRES 7 A 332 TYR MSE ARG GLY VAL GLY VAL ASP THR SER ASN LEU VAL SEQRES 8 A 332 VAL ASP GLN GLU GLY HIS LYS THR GLY LEU ALA PHE THR SEQRES 9 A 332 GLU ILE LYS SER PRO GLU GLU CYS SER ILE LEU MSE TYR SEQRES 10 A 332 ARG GLN ASP VAL ALA ASP LEU TYR LEU SER PRO GLU GLU SEQRES 11 A 332 VAL ASN GLU ALA TYR ILE ARG ARG SER LYS LEU LEU LEU SEQRES 12 A 332 VAL SER GLY THR ALA LEU SER LYS SER PRO SER ARG GLU SEQRES 13 A 332 ALA VAL LEU LYS ALA ILE ARG LEU ALA LYS ARG ASN ASP SEQRES 14 A 332 VAL LYS VAL VAL PHE GLU LEU ASP TYR ARG PRO TYR SER SEQRES 15 A 332 TRP GLU THR PRO GLU GLU THR ALA VAL TYR TYR SER LEU SEQRES 16 A 332 VAL ALA GLU GLN SER ASP ILE VAL ILE GLY THR ARG GLU SEQRES 17 A 332 GLU PHE ASP VAL LEU GLU ASN ARG THR GLU LYS GLY ASP SEQRES 18 A 332 ASN ASP GLU THR ILE ARG TYR LEU PHE LYS HIS SER PRO SEQRES 19 A 332 GLU LEU ILE VAL ILE LYS HIS GLY VAL GLU GLY SER PHE SEQRES 20 A 332 ALA TYR THR LYS ALA GLY GLU ALA TYR ARG GLY TYR ALA SEQRES 21 A 332 TYR LYS THR LYS VAL LEU LYS THR PHE GLY ALA GLY ASP SEQRES 22 A 332 SER TYR ALA SER ALA PHE LEU TYR ALA LEU ILE SER GLY SEQRES 23 A 332 LYS GLY ILE GLU THR ALA LEU LYS TYR GLY SER ALA SER SEQRES 24 A 332 ALA SER ILE VAL VAL SER LYS HIS SER SER SER ASP ALA SEQRES 25 A 332 MSE PRO SER VAL GLU GLU ILE GLU ALA LEU ILE GLU LYS SEQRES 26 A 332 ASP GLU THR ILE THR ILE ALA MODRES 2QCV MSE A 32 MET SELENOMETHIONINE MODRES 2QCV MSE A 36 MET SELENOMETHIONINE MODRES 2QCV MSE A 79 MET SELENOMETHIONINE MODRES 2QCV MSE A 115 MET SELENOMETHIONINE MODRES 2QCV MSE A 312 MET SELENOMETHIONINE HET MSE A 32 8 HET MSE A 36 8 HET MSE A 79 8 HET MSE A 115 8 HET MSE A 312 8 HET PGE A 332 20 HET PGE A 333 10 HETNAM MSE SELENOMETHIONINE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 PGE 2(C6 H14 O4) FORMUL 4 HOH *221(H2 O) HELIX 1 1 PRO A 31 THR A 35 5 5 HELIX 2 2 GLY A 44 LEU A 56 1 13 HELIX 3 3 ASP A 69 VAL A 82 1 14 HELIX 4 4 VAL A 120 LEU A 125 5 6 HELIX 5 5 SER A 126 VAL A 130 5 5 HELIX 6 6 ASN A 131 ARG A 136 1 6 HELIX 7 7 THR A 146 SER A 149 5 4 HELIX 8 8 PRO A 152 ASN A 167 1 16 HELIX 9 9 ARG A 178 TRP A 182 5 5 HELIX 10 10 THR A 184 SER A 199 1 16 HELIX 11 11 ARG A 206 GLU A 213 1 8 HELIX 12 12 ASP A 220 PHE A 229 1 10 HELIX 13 13 GLY A 241 GLU A 243 5 3 HELIX 14 14 GLY A 269 SER A 284 1 16 HELIX 15 15 GLY A 287 LYS A 305 1 19 HELIX 16 16 SER A 314 ASP A 325 1 12 SHEET 1 A 9 LEU A 89 VAL A 91 0 SHEET 2 A 9 ALA A 60 ILE A 66 1 N GLY A 64 O VAL A 90 SHEET 3 A 9 PHE A 11 ILE A 16 1 N ALA A 15 O ILE A 63 SHEET 4 A 9 SER A 138 SER A 144 1 O LEU A 142 N ILE A 14 SHEET 5 A 9 LYS A 170 GLU A 174 1 O VAL A 172 N LEU A 141 SHEET 6 A 9 ILE A 201 THR A 205 1 O ILE A 201 N PHE A 173 SHEET 7 A 9 LEU A 235 LYS A 239 1 O VAL A 237 N VAL A 202 SHEET 8 A 9 SER A 245 THR A 249 -1 O PHE A 246 N ILE A 238 SHEET 9 A 9 ALA A 254 GLY A 257 -1 O GLY A 257 N SER A 245 SHEET 1 B 4 PHE A 38 GLY A 43 0 SHEET 2 B 4 CYS A 20 ALA A 25 -1 N ASP A 22 O TYR A 41 SHEET 3 B 4 LEU A 100 SER A 107 1 O ALA A 101 N LEU A 23 SHEET 4 B 4 GLU A 110 TYR A 116 -1 O SER A 112 N GLU A 104 LINK C PRO A 31 N MSE A 32 1555 1555 1.33 LINK C MSE A 32 N GLU A 33 1555 1555 1.33 LINK C THR A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N THR A 37 1555 1555 1.34 LINK C TYR A 78 N MSE A 79 1555 1555 1.34 LINK C MSE A 79 N ARG A 80 1555 1555 1.33 LINK C LEU A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N TYR A 116 1555 1555 1.33 LINK C ALA A 311 N MSE A 312 1555 1555 1.33 LINK C MSE A 312 N PRO A 313 1555 1555 1.35 CISPEP 1 SER A 151 PRO A 152 0 0.59 SITE 1 AC1 11 GLU A 174 ASP A 176 THR A 205 GLU A 208 SITE 2 AC1 11 LYS A 239 ALA A 270 GLY A 271 ASP A 272 SITE 3 AC1 11 TYR A 274 ALA A 299 HOH A 442 SITE 1 AC2 9 LYS A 159 ARG A 162 GLU A 186 SER A 193 SITE 2 AC2 9 LEU A 212 ASN A 214 TYR A 227 HOH A 382 SITE 3 AC2 9 HOH A 440 CRYST1 194.001 194.001 48.083 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005155 0.002976 0.000000 0.00000 SCALE2 0.000000 0.005952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020797 0.00000