HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-JUN-07 2QDD TITLE CRYSTAL STRUCTURE OF A MEMBER OF ENOLASE SUPERFAMILY FROM ROSEOVARIUS TITLE 2 NUBINHIBENS ISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSEOVARIUS NUBINHIBENS; SOURCE 3 ORGANISM_TAXID: 89187; SOURCE 4 STRAIN: ISM; SOURCE 5 GENE: COG4948, ISM_14065; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS ENOLASE, RACEMASE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NYSGRC, NEW YORK STRUCTURAL GENOMICS RESEARCH KEYWDS 3 CONSORTIUM, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 4 NYSGXRC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,J.BONANNO,J.M.SAUDER,J.M.GILMORE,M.IIZUKA,C.GROSHONG, AUTHOR 2 T.GHEYI,S.SOJITRA,S.R.WASSERMAN,J.KOSS,J.GERLT,S.K.BURLEY,S.C.ALMO, AUTHOR 3 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 21-FEB-24 2QDD 1 REMARK REVDAT 6 03-FEB-21 2QDD 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 14-NOV-18 2QDD 1 AUTHOR REVDAT 4 18-OCT-17 2QDD 1 REMARK REVDAT 3 13-JUL-11 2QDD 1 VERSN REVDAT 2 24-FEB-09 2QDD 1 VERSN REVDAT 1 26-JUN-07 2QDD 0 JRNL AUTH Y.PATSKOVSKY,J.BONANNO,J.M.SAUDER,J.M.GILMORE,M.IIZUKA, JRNL AUTH 2 C.GROSHONG,T.GHEYI,S.SOJITRA,S.R.WASSERMAN,J.KOSS,J.GERLT, JRNL AUTH 3 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A MEMBER OF ENOLASE SUPERFAMILY FROM JRNL TITL 2 ROSEOVARIUS NUBINHIBENS ISM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 33995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1098 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2352 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.69000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : 3.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.328 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.439 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5814 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7965 ; 1.125 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 764 ; 7.889 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;40.294 ;22.953 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 865 ;19.454 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;21.388 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 878 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4553 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2424 ; 0.130 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3774 ; 0.292 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 570 ; 0.151 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 107 ; 0.106 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.164 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3778 ; 3.063 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5957 ; 4.428 ; 3.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2282 ; 5.512 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1993 ; 8.020 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 369 1 REMARK 3 1 B 1 B 369 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2653 ; 0.28 ; 0.05 REMARK 3 TIGHT THERMAL 1 B (A**2): 2653 ; 2.71 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35405 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : 0.64000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, 10% GLYCEROL, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.42100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.42100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.42100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.42100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.42100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.42100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.42100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.42100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 27900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 94680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 126.84200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 63.42100 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 63.42100 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -63.42100 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 63.42100 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 24 REMARK 465 ARG A 25 REMARK 465 GLY A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 MET B -1 REMARK 465 TYR B 19 REMARK 465 TRP B 20 REMARK 465 LEU B 21 REMARK 465 SER B 22 REMARK 465 GLY B 23 REMARK 465 GLY B 24 REMARK 465 ARG B 25 REMARK 465 LEU B 26 REMARK 465 LYS B 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 59 75.90 -64.00 REMARK 500 PRO A 144 -50.38 -29.72 REMARK 500 ASN A 196 59.02 39.18 REMARK 500 GLN A 219 72.28 36.67 REMARK 500 ASP A 241 -84.40 -152.38 REMARK 500 PRO B 59 77.99 -65.14 REMARK 500 ALA B 130 78.79 -64.77 REMARK 500 GLN B 219 77.66 35.06 REMARK 500 GLN B 219 77.61 34.72 REMARK 500 ASP B 241 -86.71 -154.92 REMARK 500 LEU B 317 -168.80 -104.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 28 ASP A 29 -147.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 377 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9436C RELATED DB: TARGETDB DBREF 2QDD A 2 368 UNP A3SNF7 A3SNF7_9RHOB 2 368 DBREF 2QDD B 2 368 UNP A3SNF7 A3SNF7_9RHOB 2 368 SEQADV 2QDD MET A -1 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD SER A 0 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD LEU A 1 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD GLU A 369 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD GLY A 370 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS A 371 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS A 372 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS A 373 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS A 374 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS A 375 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS A 376 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD MET B -1 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD SER B 0 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD LEU B 1 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD GLU B 369 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD GLY B 370 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS B 371 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS B 372 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS B 373 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS B 374 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS B 375 UNP A3SNF7 CLONING ARTIFACT SEQADV 2QDD HIS B 376 UNP A3SNF7 CLONING ARTIFACT SEQRES 1 A 378 MET SER LEU ARG ILE THR ARG LEU THR VAL PHE HIS LEU SEQRES 2 A 378 ASP LEU PRO LEU ALA LYS PRO TYR TRP LEU SER GLY GLY SEQRES 3 A 378 ARG LEU LYS PHE ASP ARG LEU ASP SER THR TYR LEU ARG SEQRES 4 A 378 ILE ASP THR ASP GLU GLY VAL THR GLY TRP GLY GLU GLY SEQRES 5 A 378 CYS PRO TRP GLY HIS SER TYR LEU PRO ALA HIS GLY PRO SEQRES 6 A 378 GLY LEU ARG ALA GLY ILE ALA THR LEU ALA PRO HIS LEU SEQRES 7 A 378 LEU GLY LEU ASP PRO ARG SER LEU ASP HIS VAL ASN ARG SEQRES 8 A 378 VAL MET ASP LEU GLN LEU PRO GLY HIS SER TYR VAL LYS SEQRES 9 A 378 SER PRO ILE ASP MET ALA CYS TRP ASP ILE LEU GLY GLN SEQRES 10 A 378 VAL ALA GLY LEU PRO LEU TRP GLN LEU LEU GLY GLY GLU SEQRES 11 A 378 ALA ALA THR PRO VAL PRO ILE ASN SER SER ILE SER THR SEQRES 12 A 378 GLY THR PRO ASP GLN MET LEU GLY LEU ILE ALA GLU ALA SEQRES 13 A 378 ALA ALA GLN GLY TYR ARG THR HIS SER ALA LYS ILE GLY SEQRES 14 A 378 GLY SER ASP PRO ALA GLN ASP ILE ALA ARG ILE GLU ALA SEQRES 15 A 378 ILE SER ALA GLY LEU PRO ASP GLY HIS ARG VAL THR PHE SEQRES 16 A 378 ASP VAL ASN ARG ALA TRP THR PRO ALA ILE ALA VAL GLU SEQRES 17 A 378 VAL LEU ASN SER VAL ARG ALA ARG ASP TRP ILE GLU GLN SEQRES 18 A 378 PRO CYS GLN THR LEU ASP GLN CYS ALA HIS VAL ALA ARG SEQRES 19 A 378 ARG VAL ALA ASN PRO ILE MET LEU ASP GLU CYS LEU HIS SEQRES 20 A 378 GLU PHE SER ASP HIS LEU ALA ALA TRP SER ARG GLY ALA SEQRES 21 A 378 CYS GLU GLY VAL LYS ILE LYS PRO ASN ARG VAL GLY GLY SEQRES 22 A 378 LEU THR ARG ALA ARG GLN ILE ARG ASP PHE GLY VAL SER SEQRES 23 A 378 VAL GLY TRP GLN MET HIS ILE GLU ASP VAL GLY GLY THR SEQRES 24 A 378 ALA LEU ALA ASP THR ALA ALA LEU HIS LEU ALA ALA SER SEQRES 25 A 378 THR PRO GLU ALA ASN ARG LEU ALA SER TRP LEU GLY HIS SEQRES 26 A 378 ALA HIS LEU ALA ASP ASP PRO ILE PRO GLY GLN GLY ALA SEQRES 27 A 378 ARG ASN ARG ASP GLY LEU ALA THR PRO PRO SER ALA PRO SEQRES 28 A 378 GLY LEU GLY VAL ILE PRO ASP PRO GLU ALA LEU GLY ARG SEQRES 29 A 378 PRO VAL ALA SER TYR ASP GLU GLY HIS HIS HIS HIS HIS SEQRES 30 A 378 HIS SEQRES 1 B 378 MET SER LEU ARG ILE THR ARG LEU THR VAL PHE HIS LEU SEQRES 2 B 378 ASP LEU PRO LEU ALA LYS PRO TYR TRP LEU SER GLY GLY SEQRES 3 B 378 ARG LEU LYS PHE ASP ARG LEU ASP SER THR TYR LEU ARG SEQRES 4 B 378 ILE ASP THR ASP GLU GLY VAL THR GLY TRP GLY GLU GLY SEQRES 5 B 378 CYS PRO TRP GLY HIS SER TYR LEU PRO ALA HIS GLY PRO SEQRES 6 B 378 GLY LEU ARG ALA GLY ILE ALA THR LEU ALA PRO HIS LEU SEQRES 7 B 378 LEU GLY LEU ASP PRO ARG SER LEU ASP HIS VAL ASN ARG SEQRES 8 B 378 VAL MET ASP LEU GLN LEU PRO GLY HIS SER TYR VAL LYS SEQRES 9 B 378 SER PRO ILE ASP MET ALA CYS TRP ASP ILE LEU GLY GLN SEQRES 10 B 378 VAL ALA GLY LEU PRO LEU TRP GLN LEU LEU GLY GLY GLU SEQRES 11 B 378 ALA ALA THR PRO VAL PRO ILE ASN SER SER ILE SER THR SEQRES 12 B 378 GLY THR PRO ASP GLN MET LEU GLY LEU ILE ALA GLU ALA SEQRES 13 B 378 ALA ALA GLN GLY TYR ARG THR HIS SER ALA LYS ILE GLY SEQRES 14 B 378 GLY SER ASP PRO ALA GLN ASP ILE ALA ARG ILE GLU ALA SEQRES 15 B 378 ILE SER ALA GLY LEU PRO ASP GLY HIS ARG VAL THR PHE SEQRES 16 B 378 ASP VAL ASN ARG ALA TRP THR PRO ALA ILE ALA VAL GLU SEQRES 17 B 378 VAL LEU ASN SER VAL ARG ALA ARG ASP TRP ILE GLU GLN SEQRES 18 B 378 PRO CYS GLN THR LEU ASP GLN CYS ALA HIS VAL ALA ARG SEQRES 19 B 378 ARG VAL ALA ASN PRO ILE MET LEU ASP GLU CYS LEU HIS SEQRES 20 B 378 GLU PHE SER ASP HIS LEU ALA ALA TRP SER ARG GLY ALA SEQRES 21 B 378 CYS GLU GLY VAL LYS ILE LYS PRO ASN ARG VAL GLY GLY SEQRES 22 B 378 LEU THR ARG ALA ARG GLN ILE ARG ASP PHE GLY VAL SER SEQRES 23 B 378 VAL GLY TRP GLN MET HIS ILE GLU ASP VAL GLY GLY THR SEQRES 24 B 378 ALA LEU ALA ASP THR ALA ALA LEU HIS LEU ALA ALA SER SEQRES 25 B 378 THR PRO GLU ALA ASN ARG LEU ALA SER TRP LEU GLY HIS SEQRES 26 B 378 ALA HIS LEU ALA ASP ASP PRO ILE PRO GLY GLN GLY ALA SEQRES 27 B 378 ARG ASN ARG ASP GLY LEU ALA THR PRO PRO SER ALA PRO SEQRES 28 B 378 GLY LEU GLY VAL ILE PRO ASP PRO GLU ALA LEU GLY ARG SEQRES 29 B 378 PRO VAL ALA SER TYR ASP GLU GLY HIS HIS HIS HIS HIS SEQRES 30 B 378 HIS HET GOL A 377 6 HET GOL B 377 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *323(H2 O) HELIX 1 1 HIS A 61 LEU A 77 1 17 HELIX 2 2 SER A 83 LEU A 95 1 13 HELIX 3 3 HIS A 98 GLY A 118 1 21 HELIX 4 4 PRO A 120 LEU A 125 1 6 HELIX 5 5 THR A 143 GLY A 158 1 16 HELIX 6 6 ASP A 170 GLY A 184 1 15 HELIX 7 7 THR A 200 ASN A 209 1 10 HELIX 8 8 THR A 223 ARG A 232 1 10 HELIX 9 9 GLU A 246 GLY A 257 1 12 HELIX 10 10 LYS A 265 GLY A 270 1 6 HELIX 11 11 GLY A 271 GLY A 286 1 16 HELIX 12 12 THR A 297 SER A 310 1 14 HELIX 13 13 LEU A 321 LEU A 326 5 6 HELIX 14 14 ASP A 356 LEU A 360 5 5 HELIX 15 15 HIS B 61 LEU B 77 1 17 HELIX 16 16 SER B 83 LEU B 95 1 13 HELIX 17 17 HIS B 98 GLY B 118 1 21 HELIX 18 18 PRO B 120 LEU B 125 1 6 HELIX 19 19 THR B 143 GLY B 158 1 16 HELIX 20 20 ASP B 170 GLY B 184 1 15 HELIX 21 21 THR B 200 ASN B 209 1 10 HELIX 22 22 THR B 223 ARG B 232 1 10 HELIX 23 23 GLU B 246 GLY B 257 1 12 HELIX 24 24 LYS B 265 GLY B 270 1 6 HELIX 25 25 GLY B 271 GLY B 286 1 16 HELIX 26 26 THR B 297 SER B 310 1 14 HELIX 27 27 PRO B 312 ARG B 316 5 5 HELIX 28 28 LEU B 321 LEU B 326 5 6 HELIX 29 29 ASP B 356 GLY B 361 1 6 SHEET 1 A 4 THR A 45 GLY A 50 0 SHEET 2 A 4 LYS A 27 THR A 40 -1 N LEU A 36 O GLY A 48 SHEET 3 A 4 ILE A 3 TRP A 20 -1 N THR A 4 O ASP A 39 SHEET 4 A 4 ALA A 365 ASP A 368 -1 O TYR A 367 N LEU A 6 SHEET 1 B 2 VAL A 133 PRO A 134 0 SHEET 2 B 2 LEU A 342 ALA A 343 -1 O ALA A 343 N VAL A 133 SHEET 1 C 7 ASN A 136 ILE A 139 0 SHEET 2 C 7 THR A 161 LYS A 165 1 O SER A 163 N ILE A 139 SHEET 3 C 7 ARG A 190 ASP A 194 1 O THR A 192 N HIS A 162 SHEET 4 C 7 TRP A 216 GLU A 218 1 O GLU A 218 N PHE A 193 SHEET 5 C 7 ILE A 238 LEU A 240 1 O MET A 239 N ILE A 217 SHEET 6 C 7 GLY A 261 ILE A 264 1 O GLY A 261 N LEU A 240 SHEET 7 C 7 GLN A 288 ILE A 291 1 O HIS A 290 N ILE A 264 SHEET 1 D 4 THR B 45 GLY B 50 0 SHEET 2 D 4 ARG B 30 THR B 40 -1 N LEU B 36 O GLY B 48 SHEET 3 D 4 ILE B 3 PRO B 14 -1 N LEU B 13 O LEU B 31 SHEET 4 D 4 ALA B 365 ASP B 368 -1 O ALA B 365 N VAL B 8 SHEET 1 E 2 VAL B 133 PRO B 134 0 SHEET 2 E 2 LEU B 342 ALA B 343 -1 O ALA B 343 N VAL B 133 SHEET 1 F 7 ASN B 136 ILE B 139 0 SHEET 2 F 7 THR B 161 LYS B 165 1 O LYS B 165 N ILE B 139 SHEET 3 F 7 ARG B 190 ASP B 194 1 O THR B 192 N HIS B 162 SHEET 4 F 7 TRP B 216 GLU B 218 1 O GLU B 218 N PHE B 193 SHEET 5 F 7 ILE B 238 LEU B 240 1 O MET B 239 N ILE B 217 SHEET 6 F 7 GLY B 261 ILE B 264 1 O LYS B 263 N LEU B 240 SHEET 7 F 7 GLN B 288 ILE B 291 1 O HIS B 290 N ILE B 264 SITE 1 AC1 5 GLY A 97 HIS A 98 HOH A 470 PRO B 59 SITE 2 AC1 5 HIS B 98 SITE 1 AC2 11 PRO B 201 ASP B 225 GLN B 226 HIS B 229 SITE 2 AC2 11 TRP B 254 CYS B 259 VAL B 285 GLY B 286 SITE 3 AC2 11 TRP B 287 HOH B 442 HOH B 499 CRYST1 126.842 126.842 96.608 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007884 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010351 0.00000