HEADER ANTITUMOR PROTEIN 21-JUN-07 2QDJ TITLE CRYSTAL STRUCTURE OF THE RETINOBLASTOMA PROTEIN N-DOMAIN PROVIDES TITLE 2 INSIGHT INTO TUMOR SUPPRESSION, LIGAND INTERACTION AND HOLOPROTEIN TITLE 3 ARCHITECTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOBLASTOMA-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: PP110, P105-RB, RB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS CYCLIN FOLD, CYCLIN WEDGE, ANTITUMOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.HASSLER,S.MITTNACHT,L.H.PEARL REVDAT 3 20-NOV-24 2QDJ 1 SEQADV LINK REVDAT 2 24-FEB-09 2QDJ 1 VERSN REVDAT 1 22-JAN-08 2QDJ 0 JRNL AUTH M.HASSLER,S.SINGH,W.W.YUE,M.LUCZYNSKI,R.LAKBIR, JRNL AUTH 2 F.SANCHEZ-SANCHEZ,T.BADER,L.H.PEARL,S.MITTNACHT JRNL TITL CRYSTAL STRUCTURE OF THE RETINOBLASTOMA PROTEIN N DOMAIN JRNL TITL 2 PROVIDES INSIGHT INTO TUMOR SUPPRESSION, LIGAND INTERACTION, JRNL TITL 3 AND HOLOPROTEIN ARCHITECTURE. JRNL REF MOL.CELL V. 28 371 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17996702 JRNL DOI 10.1016/J.MOLCEL.2007.08.023 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 24550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2117 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : -0.95000 REMARK 3 B33 (A**2) : 1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2152 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2901 ; 1.189 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 253 ; 4.792 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;37.512 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;16.890 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;23.965 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1540 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1170 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1531 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 132 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.288 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 2.479 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2108 ; 3.421 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 857 ; 3.866 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 793 ; 5.030 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 51.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.30400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.08, RESOLVE 2.08 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA ACETATE, 25% (W/V) PEG 4000, REMARK 280 0.1 M TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.14800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.32450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.14800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.32450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.14800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.32450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.14800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.32450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 435 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 477 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 496 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 589 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 84 REMARK 465 ASP A 85 REMARK 465 GLY A 86 REMARK 465 VAL A 87 REMARK 465 LEU A 88 REMARK 465 GLY A 89 REMARK 465 GLY A 90 REMARK 465 TYR A 91 REMARK 465 ILE A 92 REMARK 465 GLN A 93 REMARK 465 GLN A 207 REMARK 465 MSE A 208 REMARK 465 GLU A 209 REMARK 465 PRO A 245 REMARK 465 ILE A 246 REMARK 465 ASN A 247 REMARK 465 GLY A 248 REMARK 465 SER A 249 REMARK 465 PRO A 250 REMARK 465 ARG A 251 REMARK 465 THR A 252 REMARK 465 PRO A 253 REMARK 465 ARG A 254 REMARK 465 ARG A 255 REMARK 465 GLY A 256 REMARK 465 GLN A 257 REMARK 465 ASN A 258 REMARK 465 ARG A 259 REMARK 465 SER A 260 REMARK 465 ALA A 261 REMARK 465 ARG A 262 REMARK 465 ILE A 263 REMARK 465 ALA A 264 REMARK 465 LYS A 265 REMARK 465 GLN A 266 REMARK 465 LEU A 267 REMARK 465 GLU A 268 REMARK 465 ASN A 269 REMARK 465 GLY A 304 REMARK 465 LEU A 305 REMARK 465 VAL A 306 REMARK 465 THR A 307 REMARK 465 SER A 308 REMARK 465 ASN A 309 REMARK 465 GLY A 310 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 205 CG1 CG2 REMARK 470 LEU A 206 CG CD1 CD2 REMARK 470 ASP A 210 CG OD1 OD2 REMARK 470 ASP A 270 CG OD1 OD2 REMARK 470 LEU A 303 CG CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 212 N REMARK 480 ILE A 214 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 210 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 205 48.87 -106.89 REMARK 500 ASP A 211 95.92 64.34 REMARK 500 LYS A 279 4.67 -66.47 REMARK 500 ASN A 295 -57.08 -154.17 REMARK 500 ASN A 301 -51.84 -127.65 REMARK 500 SER A 302 45.48 -62.90 REMARK 500 ASP A 330 -115.24 -101.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 2QDJ A 52 355 UNP P06400 RB_HUMAN 52 355 SEQADV 2QDJ MSE A 113 UNP P06400 MET 113 MODIFIED RESIDUE SEQADV 2QDJ MSE A 148 UNP P06400 MET 148 MODIFIED RESIDUE SEQADV 2QDJ MSE A 208 UNP P06400 MET 208 MODIFIED RESIDUE SEQADV 2QDJ MSE A 219 UNP P06400 MET 219 MODIFIED RESIDUE SEQADV 2QDJ MSE A 233 UNP P06400 MET 233 MODIFIED RESIDUE SEQADV 2QDJ MSE A 300 UNP P06400 MET 300 MODIFIED RESIDUE SEQRES 1 A 304 THR GLU GLU PRO ASP PHE THR ALA LEU CYS GLN LYS LEU SEQRES 2 A 304 LYS ILE PRO ASP HIS VAL ARG GLU ARG ALA TRP LEU THR SEQRES 3 A 304 TRP GLU LYS VAL SER SER VAL ASP GLY VAL LEU GLY GLY SEQRES 4 A 304 TYR ILE GLN LYS LYS LYS GLU LEU TRP GLY ILE CYS ILE SEQRES 5 A 304 PHE ILE ALA ALA VAL ASP LEU ASP GLU MSE SER PHE THR SEQRES 6 A 304 PHE THR GLU LEU GLN LYS ASN ILE GLU ILE SER VAL HIS SEQRES 7 A 304 LYS PHE PHE ASN LEU LEU LYS GLU ILE ASP THR SER THR SEQRES 8 A 304 LYS VAL ASP ASN ALA MSE SER ARG LEU LEU LYS LYS TYR SEQRES 9 A 304 ASP VAL LEU PHE ALA LEU PHE SER LYS LEU GLU ARG THR SEQRES 10 A 304 CYS GLU LEU ILE TYR LEU THR GLN PRO SER SER SER ILE SEQRES 11 A 304 SER THR GLU ILE ASN SER ALA LEU VAL LEU LYS VAL SER SEQRES 12 A 304 TRP ILE THR PHE LEU LEU ALA LYS GLY GLU VAL LEU GLN SEQRES 13 A 304 MSE GLU ASP ASP LEU VAL ILE SER PHE GLN LEU MSE LEU SEQRES 14 A 304 CYS VAL LEU ASP TYR PHE ILE LYS LEU SER PRO PRO MSE SEQRES 15 A 304 LEU LEU LYS GLU PRO TYR LYS THR ALA VAL ILE PRO ILE SEQRES 16 A 304 ASN GLY SER PRO ARG THR PRO ARG ARG GLY GLN ASN ARG SEQRES 17 A 304 SER ALA ARG ILE ALA LYS GLN LEU GLU ASN ASP THR ARG SEQRES 18 A 304 ILE ILE GLU VAL LEU CYS LYS GLU HIS GLU CYS ASN ILE SEQRES 19 A 304 ASP GLU VAL LYS ASN VAL TYR PHE LYS ASN PHE ILE PRO SEQRES 20 A 304 PHE MSE ASN SER LEU GLY LEU VAL THR SER ASN GLY LEU SEQRES 21 A 304 PRO GLU VAL GLU ASN LEU SER LYS ARG TYR GLU GLU ILE SEQRES 22 A 304 TYR LEU LYS ASN LYS ASP LEU ASP ALA ARG LEU PHE LEU SEQRES 23 A 304 ASP HIS ASP LYS THR LEU GLN THR ASP SER ILE ASP SER SEQRES 24 A 304 PHE GLU THR GLN ARG MODRES 2QDJ MSE A 113 MET SELENOMETHIONINE MODRES 2QDJ MSE A 148 MET SELENOMETHIONINE MODRES 2QDJ MSE A 219 MET SELENOMETHIONINE MODRES 2QDJ MSE A 233 MET SELENOMETHIONINE MODRES 2QDJ MSE A 300 MET SELENOMETHIONINE HET MSE A 113 8 HET MSE A 148 8 HET MSE A 219 8 HET MSE A 233 8 HET MSE A 300 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 HOH *234(H2 O) HELIX 1 1 GLU A 54 LEU A 64 1 11 HELIX 2 2 PRO A 67 SER A 83 1 17 HELIX 3 3 LYS A 94 ASP A 111 1 18 HELIX 4 4 THR A 116 GLU A 125 1 10 HELIX 5 5 SER A 127 LYS A 136 1 10 HELIX 6 6 SER A 141 TYR A 173 1 33 HELIX 7 7 SER A 187 VAL A 205 1 19 HELIX 8 8 ASP A 211 LEU A 229 1 19 HELIX 9 9 PRO A 231 LEU A 235 5 5 HELIX 10 10 LYS A 240 ILE A 244 5 5 HELIX 11 11 THR A 271 GLU A 282 1 12 HELIX 12 12 ASN A 284 ASN A 295 1 12 HELIX 13 13 ASN A 295 MSE A 300 1 6 HELIX 14 14 GLU A 313 LYS A 329 1 17 HELIX 15 15 ASP A 332 HIS A 339 5 8 HELIX 16 16 ASP A 340 GLN A 344 5 5 HELIX 17 17 ASP A 346 GLN A 354 1 9 LINK C GLU A 112 N MSE A 113 1555 1555 1.32 LINK C MSE A 113 N SER A 114 1555 1555 1.32 LINK C ALA A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N SER A 149 1555 1555 1.33 LINK C LEU A 218 N MSE A 219 1555 1555 1.33 LINK C MSE A 219 N LEU A 220 1555 1555 1.33 LINK C PRO A 232 N MSE A 233 1555 1555 1.33 LINK C MSE A 233 N LEU A 234 1555 1555 1.33 LINK C PHE A 299 N MSE A 300 1555 1555 1.33 LINK C MSE A 300 N ASN A 301 1555 1555 1.33 CISPEP 1 GLU A 237 PRO A 238 0 5.58 CRYST1 72.296 106.649 98.191 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010184 0.00000