HEADER PROTEIN TRANSPORT 22-JUN-07 2QDZ OBSLTE 22-OCT-14 2QDZ 4QKY TITLE STRUCTURE OF THE MEMBRANE PROTEIN FHAC: A MEMBER OF THE OMP85/TPSB TITLE 2 TRANSPORTER FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TPSB TRANSPORTER FHAC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 520; SOURCE 4 GENE: FHAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-OMP5; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7FCW KEYWDS BETA BARREL, POTRA DOMAIN, MEMBRANE, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR B.CLANTIN,F.JACOB-DUBUISSON,V.VILLERET REVDAT 4 22-OCT-14 2QDZ 1 OBSLTE VERSN REVDAT 3 24-FEB-09 2QDZ 1 VERSN REVDAT 2 04-SEP-07 2QDZ 1 JRNL REVDAT 1 28-AUG-07 2QDZ 0 JRNL AUTH B.CLANTIN,A.S.DELATTRE,P.RUCKTOOA,N.SAINT,A.C.MELI,C.LOCHT, JRNL AUTH 2 F.JACOB-DUBUISSON,V.VILLERET JRNL TITL STRUCTURE OF THE MEMBRANE PROTEIN FHAC: A MEMBER OF THE JRNL TITL 2 OMP85-TPSB TRANSPORTER SUPERFAMILY. JRNL REF SCIENCE V. 317 957 2007 JRNL REFN ISSN 0036-8075 JRNL PMID 17702945 JRNL DOI 10.1126/SCIENCE.1143860 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.HODAK,B.CLANTIN,E.WILLERY,V.VILLERET,C.LOCHT, REMARK 1 AUTH 2 F.JACOB-DUBUISSON REMARK 1 TITL SECRETION SIGNAL OF THE FILAMENTOUS HAEMAGGLUTININ, A MODEL REMARK 1 TITL 2 TWO-PARTNER SECRETION SUBSTRATE. REMARK 1 REF MOL.MICROBIOL. V. 61 368 2006 REMARK 1 REFN ISSN 0950-382X REMARK 1 PMID 16771844 REMARK 1 DOI 10.1111/J.1365-2958.2006.05242.X REMARK 1 REFERENCE 2 REMARK 1 AUTH A.C.MELI,H.HODAK,B.CLANTIN,C.LOCHT,G.MOLLE, REMARK 1 AUTH 2 F.JACOB-DUBUISSON,N.SAINT REMARK 1 TITL CHANNEL PROPERTIES OF TPSB TRANSPORTER FHAC POINT TO TWO REMARK 1 TITL 2 FUNCTIONAL DOMAINS WITH A C-TERMINAL PROTEIN-CONDUCTING REMARK 1 TITL 3 PORE. REMARK 1 REF J.BIOL.CHEM. V. 281 158 2006 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 16284399 REMARK 1 DOI 10.1074/JBC.M508524200 REMARK 1 REFERENCE 3 REMARK 1 AUTH B.CLANTIN,H.HODAK,E.WILLERY,C.LOCHT,F.JACOB-DUBUISSON, REMARK 1 AUTH 2 V.VILLERET REMARK 1 TITL THE CRYSTAL STRUCTURE OF FILAMENTOUS HEMAGGLUTININ SECRETION REMARK 1 TITL 2 DOMAIN AND ITS IMPLICATIONS FOR THE TWO-PARTNER SECRETION REMARK 1 TITL 3 PATHWAY. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 101 6194 2004 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 15079085 REMARK 1 DOI 10.1073/PNAS.0400291101 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.GUEDIN,E.WILLERY,J.TOMMASSEN,E.FORT,H.DROBECQ,C.LOCHT, REMARK 1 AUTH 2 F.JACOB-DUBUISSON REMARK 1 TITL NOVEL TOPOLOGICAL FEATURES OF FHAC, THE OUTER MEMBRANE REMARK 1 TITL 2 TRANSPORTER INVOLVED IN THE SECRETION OF THE BORDETELLA REMARK 1 TITL 3 PERTUSSIS FILAMENTOUS HEMAGGLUTININ. REMARK 1 REF J.BIOL.CHEM. V. 275 30202 2000 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 10906141 REMARK 1 DOI 10.1074/JBC.M005515200 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4847397.350 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 27565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.287 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2727 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4161 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 422 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3971 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 26.15000 REMARK 3 B22 (A**2) : -17.23000 REMARK 3 B33 (A**2) : -8.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM SIGMAA (A) : 0.56 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.58 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 2.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 30.800 REMARK 3 IMPROPER ANGLES (DEGREES) : 4.050 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.22 REMARK 3 BSOL : 26.75 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB043478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978951 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27928 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG 1000, 1% BETA-OCTYL-GLUCOSIDE, REMARK 280 400 MM IMIDAZOLE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.13350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.13350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.29950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.32600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.29950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.32600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.13350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.29950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.32600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.13350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.29950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.32600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE MONOMER, WHICH IS THE REMARK 300 BIOLOGICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 31 REMARK 465 THR A 32 REMARK 465 ARG A 33 REMARK 465 PRO A 34 REMARK 465 PRO A 35 REMARK 465 VAL A 36 REMARK 465 GLU A 37 REMARK 465 LEU A 38 REMARK 465 ASN A 39 REMARK 465 PRO A 40 REMARK 465 GLN A 41 REMARK 465 SER A 42 REMARK 465 GLU A 43 REMARK 465 ALA A 44 REMARK 465 ALA A 45 REMARK 465 ALA A 46 REMARK 465 PRO A 47 REMARK 465 ALA A 48 REMARK 465 ARG A 49 REMARK 465 LYS A 50 REMARK 465 PRO A 51 REMARK 465 ASP A 52 REMARK 465 ASN A 384 REMARK 465 ASN A 385 REMARK 465 GLY A 386 REMARK 465 LYS A 387 REMARK 465 TYR A 388 REMARK 465 ALA A 389 REMARK 465 ALA A 390 REMARK 465 TYR A 391 REMARK 465 ASP A 392 REMARK 465 GLU A 393 REMARK 465 ARG A 394 REMARK 465 GLY A 395 REMARK 465 PRO A 396 REMARK 465 GLN A 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 ILE A 27 CG1 CG2 CD1 REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 443 CG1 CG2 REMARK 470 ASP A 445 CG OD1 OD2 REMARK 470 GLU A 446 CG CD OE1 OE2 REMARK 470 TYR A 447 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 448 OG1 CG2 REMARK 470 VAL A 449 CG1 CG2 REMARK 470 ARG A 450 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 452 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 453 CG OD1 ND2 REMARK 470 LEU A 454 CG CD1 CD2 REMARK 470 ARG A 455 CG CD NE CZ NH1 NH2 REMARK 470 THR A 456 OG1 CG2 REMARK 470 SER A 457 OG REMARK 470 GLN A 458 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 13 O SER A 438 1.95 REMARK 500 O GLU A 71 N ARG A 73 2.04 REMARK 500 O ARG A 432 OE1 GLN A 434 2.04 REMARK 500 O SER A 55 NE2 HIS A 62 2.08 REMARK 500 CB HIS A 62 O LEU A 85 2.09 REMARK 500 NH2 ARG A 504 CD1 ILE A 506 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 204 CG2 THR A 505 8455 1.41 REMARK 500 CD GLN A 204 CG2 THR A 505 8455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 264 CA ALA A 264 CB -0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 81 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 PRO A 119 C - N - CA ANGL. DEV. = 13.8 DEGREES REMARK 500 PRO A 211 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 ASN A 306 CB - CA - C ANGL. DEV. = -21.2 DEGREES REMARK 500 SER A 307 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 GLY A 480 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 PRO A 487 C - N - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 ALA A 513 CB - CA - C ANGL. DEV. = 10.2 DEGREES REMARK 500 PRO A 536 C - N - CD ANGL. DEV. = -18.0 DEGREES REMARK 500 PRO A 540 C - N - CD ANGL. DEV. = -17.7 DEGREES REMARK 500 ARG A 541 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 ALA A 542 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 PRO A 543 C - N - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 5 41.68 -154.76 REMARK 500 ASP A 15 -76.63 -53.52 REMARK 500 SER A 55 -54.15 -129.53 REMARK 500 VAL A 61 -158.29 -160.89 REMARK 500 VAL A 70 -11.41 67.35 REMARK 500 GLU A 71 85.71 -51.03 REMARK 500 PHE A 75 -84.53 -103.25 REMARK 500 ASP A 76 -165.94 -79.43 REMARK 500 PRO A 77 -101.05 -109.55 REMARK 500 ALA A 78 22.00 172.30 REMARK 500 ASP A 83 -6.45 80.35 REMARK 500 ASN A 86 70.11 -113.39 REMARK 500 ASP A 90 -119.42 -90.40 REMARK 500 ASN A 91 -41.37 -140.61 REMARK 500 GLU A 92 8.64 -53.82 REMARK 500 GLN A 93 -41.47 -143.86 REMARK 500 PRO A 119 -51.57 -17.85 REMARK 500 ASP A 124 85.56 -22.12 REMARK 500 ARG A 135 -163.07 -118.79 REMARK 500 MET A 159 73.18 -153.97 REMARK 500 GLN A 163 -85.08 -44.88 REMARK 500 ASP A 164 31.82 -99.06 REMARK 500 ASN A 180 67.51 -66.81 REMARK 500 ASP A 194 -73.32 -46.25 REMARK 500 GLN A 206 97.98 -66.84 REMARK 500 ALA A 209 -78.54 -56.80 REMARK 500 PRO A 211 166.90 -48.68 REMARK 500 ASP A 218 139.16 -174.43 REMARK 500 SER A 220 96.58 -160.60 REMARK 500 THR A 224 -41.54 -145.76 REMARK 500 ASN A 245 21.83 44.33 REMARK 500 TYR A 257 142.94 -179.30 REMARK 500 ASP A 259 97.17 -62.20 REMARK 500 ASN A 267 147.26 -170.79 REMARK 500 LYS A 295 -52.82 -156.10 REMARK 500 THR A 296 -105.58 -130.11 REMARK 500 ARG A 297 -70.36 -109.91 REMARK 500 ARG A 323 38.54 -145.31 REMARK 500 ALA A 342 -150.09 62.44 REMARK 500 ARG A 345 -77.50 -138.95 REMARK 500 LEU A 346 -82.49 -138.52 REMARK 500 ASP A 347 31.94 73.71 REMARK 500 ARG A 366 -142.24 -71.71 REMARK 500 ALA A 416 98.33 -67.11 REMARK 500 SER A 431 -142.72 -166.61 REMARK 500 GLN A 434 -166.21 -126.27 REMARK 500 LEU A 435 -113.69 -102.80 REMARK 500 ASN A 437 -19.86 -44.73 REMARK 500 SER A 438 -170.26 -57.95 REMARK 500 ILE A 441 70.79 -105.24 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 5 PRO A 6 142.36 REMARK 500 GLY A 56 HIS A 57 -147.72 REMARK 500 THR A 58 VAL A 59 125.04 REMARK 500 VAL A 59 THR A 60 -116.95 REMARK 500 HIS A 62 ALA A 63 130.83 REMARK 500 GLY A 72 ARG A 73 -147.49 REMARK 500 ARG A 73 LEU A 74 130.57 REMARK 500 TYR A 84 LEU A 85 -125.02 REMARK 500 MET A 217 ASP A 218 -149.60 REMARK 500 THR A 224 PRO A 225 144.95 REMARK 500 GLU A 226 ASN A 227 -129.43 REMARK 500 TYR A 256 TYR A 257 -118.37 REMARK 500 ASP A 259 ALA A 260 138.62 REMARK 500 ALA A 260 GLY A 261 -60.73 REMARK 500 HIS A 262 ASP A 263 134.66 REMARK 500 LEU A 293 LEU A 294 -143.00 REMARK 500 LEU A 294 LYS A 295 139.44 REMARK 500 THR A 296 ARG A 297 -130.02 REMARK 500 ARG A 297 TYR A 298 -123.51 REMARK 500 LEU A 346 ASP A 347 143.54 REMARK 500 ARG A 379 GLY A 380 107.48 REMARK 500 VAL A 381 GLY A 382 134.13 REMARK 500 GLY A 382 VAL A 383 -118.88 REMARK 500 LEU A 415 ALA A 416 -139.56 REMARK 500 LEU A 435 LEU A 436 149.12 REMARK 500 LEU A 436 ASN A 437 126.18 REMARK 500 THR A 442 VAL A 443 -98.50 REMARK 500 VAL A 443 GLY A 444 -142.32 REMARK 500 GLY A 444 ASP A 445 -145.97 REMARK 500 GLY A 451 TYR A 452 -144.96 REMARK 500 ARG A 455 THR A 456 -142.37 REMARK 500 SER A 498 ASN A 499 -140.31 REMARK 500 ASN A 499 HIS A 500 121.33 REMARK 500 HIS A 500 PRO A 501 -91.70 REMARK 500 PRO A 501 ASP A 502 146.54 REMARK 500 ASP A 502 ALA A 503 -91.98 REMARK 500 ALA A 503 ARG A 504 148.57 REMARK 500 ASP A 518 LEU A 519 119.07 REMARK 500 LEU A 519 PRO A 520 140.83 REMARK 500 TYR A 521 ALA A 522 143.47 REMARK 500 SER A 525 PHE A 526 -136.46 REMARK 500 GLY A 533 ALA A 534 -135.17 REMARK 500 ALA A 534 GLN A 535 135.07 REMARK 500 GLN A 535 PRO A 536 -120.81 REMARK 500 PRO A 540 ARG A 541 -95.85 REMARK 500 ARG A 541 ALA A 542 135.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 13 0.22 SIDE CHAIN REMARK 500 ARG A 208 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 126 24.9 L L OUTSIDE RANGE REMARK 500 ASN A 227 13.1 L L OUTSIDE RANGE REMARK 500 ARG A 323 22.5 L L OUTSIDE RANGE REMARK 500 VAL A 532 19.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 2QDZ A 1 554 UNP P35077 FHAC_BORPE 31 584 SEQRES 1 A 554 GLN ALA GLN LEU LEU PRO GLY ALA ARG ASP LEU ASN ARG SEQRES 2 A 554 ILE ASP ASP ARG GLN ARG LYS GLU GLN LEU GLN ARG ASP SEQRES 3 A 554 ILE GLU ARG ALA LEU THR ARG PRO PRO VAL GLU LEU ASN SEQRES 4 A 554 PRO GLN SER GLU ALA ALA ALA PRO ALA ARG LYS PRO ASP SEQRES 5 A 554 ALA THR SER GLY HIS THR VAL THR VAL HIS ALA VAL ASP SEQRES 6 A 554 LEU ASP PHE GLY VAL GLU GLY ARG LEU PHE ASP PRO ALA SEQRES 7 A 554 PRO LEU VAL GLN ASP TYR LEU ASN ARG PRO LEU ASP ASN SEQRES 8 A 554 GLU GLN LEU PHE LEU LEU VAL LYS ALA LEU SER ALA ALA SEQRES 9 A 554 LEU TYR ASP ARG GLY TYR ALA THR SER ILE VAL THR PHE SEQRES 10 A 554 VAL PRO PRO GLY VAL VAL ASP GLY VAL LEU LYS LEU LYS SEQRES 11 A 554 VAL GLU TRP GLY ARG ILE LYS GLY TRP LEU ILE ASP GLY SEQRES 12 A 554 LYS PRO LEU GLU GLY THR ARG ASP ARG MET MET VAL PHE SEQRES 13 A 554 SER ALA MET PRO GLY TRP GLN ASP LYS VAL LEU ASN VAL SEQRES 14 A 554 PHE ASP ILE ASP GLN ALA ILE TYR ASN ILE ASN ASN GLY SEQRES 15 A 554 GLY LYS THR GLY ASN ILE THR ILE VAL PRO ALA ASP GLU SEQRES 16 A 554 TYR GLY TYR SER TYR LEU ASP LEU GLN LEU GLN ARG ARG SEQRES 17 A 554 ALA LEU PRO ARG VAL SER LEU GLY MET ASP ASN SER GLY SEQRES 18 A 554 PRO GLY THR PRO GLU ASN GLY ARG TYR LYS TYR ASN ALA SEQRES 19 A 554 SER VAL THR ALA ASN ASP LEU LEU GLY LEU ASN ASP THR SEQRES 20 A 554 LEU GLY LEU TYR ILE GLY ASN ARG TYR TYR ARG ASP ALA SEQRES 21 A 554 GLY HIS ASP ALA GLU ARG ASN TYR ASP LEU MET TYR SER SEQRES 22 A 554 VAL PRO LEU GLY ARG THR ARG LEU ASP LEU GLN THR GLY SEQRES 23 A 554 TYR SER THR TYR ARG ASN LEU LEU LYS THR ARG TYR GLY SEQRES 24 A 554 GLN TYR GLN SER ALA GLY ASN SER ARG SER PHE GLY LEU SEQRES 25 A 554 LYS ALA THR ARG LEU LEU TYR ARG ASP THR ARG SER GLN SEQRES 26 A 554 PHE SER VAL TYR GLY GLY LEU LYS LEU ARG GLN ASN LYS SEQRES 27 A 554 ASN TYR LEU ALA GLY THR ARG LEU ASP VAL SER SER LYS SEQRES 28 A 554 HIS TYR SER ASP VAL THR VAL GLY MET GLN TYR SER THR SEQRES 29 A 554 GLN ARG GLY ALA ASN ALA TYR PHE GLY ASP LEU SER PHE SEQRES 30 A 554 THR ARG GLY VAL GLY VAL ASN ASN GLY LYS TYR ALA ALA SEQRES 31 A 554 TYR ASP GLU ARG GLY PRO GLN GLY ASN VAL SER ARG PHE SEQRES 32 A 554 ASN GLY SER LEU ALA TRP THR ARG TYR MET ALA LEU ALA SEQRES 33 A 554 GLY GLN PRO ILE GLN TRP ALA SER GLN LEU GLY PHE GLN SEQRES 34 A 554 TYR SER ARG GLN GLN LEU LEU ASN SER TYR GLN ILE THR SEQRES 35 A 554 VAL GLY ASP GLU TYR THR VAL ARG GLY TYR ASN LEU ARG SEQRES 36 A 554 THR SER GLN SER GLY ASP SER GLY VAL TYR LEU SER ASN SEQRES 37 A 554 THR LEU THR VAL PRO VAL GLN PHE SER LEU LEU GLY LYS SEQRES 38 A 554 GLN ALA SER VAL ALA PRO PHE VAL GLY ALA ASP VAL GLY SEQRES 39 A 554 ALA LEU LYS SER ASN HIS PRO ASP ALA ARG THR ILE ARG SEQRES 40 A 554 MET ALA GLY LEU ALA ALA GLY VAL ARG PHE ASP LEU PRO SEQRES 41 A 554 TYR ALA ARG MET SER PHE THR TYR SER LYS PRO VAL GLY SEQRES 42 A 554 ALA GLN PRO GLY GLY ALA PRO ARG ALA PRO VAL TRP LEU SEQRES 43 A 554 TYR ILE ASN ALA GLY LEU SER PHE HELIX 1 1 ALA A 8 ARG A 29 1 22 HELIX 2 2 GLN A 93 ARG A 108 1 16 HELIX 3 3 GLY A 148 MET A 159 1 12 HELIX 4 4 ASN A 168 ASN A 180 1 13 SHEET 1 A 3 VAL A 64 ASP A 67 0 SHEET 2 A 3 VAL A 126 GLU A 132 1 O VAL A 131 N ASP A 67 SHEET 3 A 3 ILE A 114 VAL A 123 -1 N ILE A 114 O GLU A 132 SHEET 1 B 4 LYS A 144 PRO A 145 0 SHEET 2 B 4 ARG A 135 ILE A 141 -1 N ILE A 141 O LYS A 144 SHEET 3 B 4 TYR A 198 ARG A 207 1 O LEU A 203 N LEU A 140 SHEET 4 B 4 LYS A 184 PRO A 192 -1 N VAL A 191 O TYR A 200 SHEET 1 C17 ARG A 212 ASN A 219 0 SHEET 2 C17 TYR A 230 ASN A 239 -1 O LYS A 231 N ASP A 218 SHEET 3 C17 THR A 247 ARG A 255 -1 O LEU A 248 N ALA A 238 SHEET 4 C17 ALA A 264 LEU A 276 -1 O GLU A 265 N ARG A 255 SHEET 5 C17 THR A 279 ARG A 291 -1 O ARG A 291 N ALA A 264 SHEET 6 C17 ALA A 304 TYR A 319 -1 O THR A 315 N ARG A 280 SHEET 7 C17 SER A 324 TYR A 340 -1 O LEU A 332 N LEU A 312 SHEET 8 C17 SER A 349 GLN A 365 -1 O TYR A 353 N ARG A 335 SHEET 9 C17 ASN A 369 ARG A 379 -1 O ARG A 379 N VAL A 356 SHEET 10 C17 SER A 401 LEU A 415 -1 O ASN A 404 N SER A 376 SHEET 11 C17 GLN A 418 TYR A 430 -1 O SER A 424 N TRP A 409 SHEET 12 C17 LEU A 470 GLY A 480 -1 O LEU A 479 N GLN A 421 SHEET 13 C17 ALA A 486 LYS A 497 -1 O VAL A 493 N VAL A 474 SHEET 14 C17 THR A 505 PHE A 517 -1 O ARG A 516 N ALA A 486 SHEET 15 C17 ALA A 522 PRO A 531 -1 O TYR A 528 N ALA A 513 SHEET 16 C17 TRP A 545 PHE A 554 -1 O TYR A 547 N THR A 527 SHEET 17 C17 ARG A 212 ASN A 219 -1 N LEU A 215 O LEU A 552 SHEET 1 D 2 TYR A 439 GLN A 440 0 SHEET 2 D 2 SER A 467 ASN A 468 -1 O ASN A 468 N TYR A 439 CRYST1 108.599 136.652 112.267 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009208 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008907 0.00000