HEADER HYDROLASE 25-JUN-07 2QE9 TITLE CRYSTAL STRUCTURE OF A PUTATIVE METAL-DEPENDENT HYDROLASE (YIZA, TITLE 2 BSU10800) FROM BACILLUS SUBTILIS AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YIZA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YP_054576.1, YIZA, YUCC, BSU10800; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DINB/YFIT-LIKE PUTATIVE METALLOENZYMES FOLD, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 2QE9 1 REMARK SEQADV LINK REVDAT 7 24-JUL-19 2QE9 1 REMARK LINK REVDAT 6 25-OCT-17 2QE9 1 REMARK REVDAT 5 18-OCT-17 2QE9 1 REMARK REVDAT 4 13-JUL-11 2QE9 1 VERSN REVDAT 3 23-MAR-11 2QE9 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2QE9 1 VERSN REVDAT 1 10-JUL-07 2QE9 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN BSU10800 JRNL TITL 2 (YP_054576.1) FROM BACILLUS SUBTILIS AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2019 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2716 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30000 REMARK 3 B22 (A**2) : -1.30000 REMARK 3 B33 (A**2) : 2.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.230 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2853 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1855 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3886 ; 1.429 ; 1.908 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4495 ; 1.310 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 3.604 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;32.149 ;23.514 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;10.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.224 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3158 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 625 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 630 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1860 ; 0.139 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1377 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1322 ; 0.072 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 196 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.118 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.085 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1724 ; 1.733 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 665 ; 0.424 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2658 ; 2.608 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1361 ; 4.402 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1224 ; 5.670 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -11 A 93 REMARK 3 RESIDUE RANGE : A 100 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6380 17.6510 11.8310 REMARK 3 T TENSOR REMARK 3 T11: -0.1418 T22: -0.0883 REMARK 3 T33: -0.2760 T12: 0.0611 REMARK 3 T13: 0.0159 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.9003 L22: 2.6665 REMARK 3 L33: 1.8746 L12: -0.8740 REMARK 3 L13: 0.0972 L23: -0.3990 REMARK 3 S TENSOR REMARK 3 S11: 0.1346 S12: 0.3449 S13: 0.0160 REMARK 3 S21: -0.2775 S22: -0.2076 S23: -0.1769 REMARK 3 S31: 0.0833 S32: 0.1811 S33: 0.0730 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): -29.0890 24.3140 22.2650 REMARK 3 T TENSOR REMARK 3 T11: -0.1604 T22: -0.1410 REMARK 3 T33: -0.1630 T12: 0.0216 REMARK 3 T13: 0.0228 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.0169 L22: 2.1154 REMARK 3 L33: 1.7709 L12: 0.5682 REMARK 3 L13: 0.7184 L23: 0.4827 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: 0.0234 S13: 0.0525 REMARK 3 S21: 0.0816 S22: -0.0829 S23: 0.3351 REMARK 3 S31: -0.0101 S32: -0.2533 S33: -0.0105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. RESIDUES 94-99 IN CHAIN A AND 152-159 IN CHAIN REMARK 3 B ARE DISORDERED AND NOT INCLUDED IN THE MODEL. REMARK 3 4. NI ION IS MODELED BASED ON METAL EXCITATION SCAN. REMARK 3 5. CITRATE ION AND ETHYLENE GLYCOL FROM THE CRYSTALLIZATION/CRYO REMARK 3 SOLUTIONS ARE MODELED. REMARK 3 6. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 7. RAMACHANDRAN OUTLIER RESIDUE -7 IN CHAIN A LIES IN A REMARK 3 DISORDERED REGION. REMARK 3 8. 36 UNUSUALLY STRONG REFLECTIONS WERE OMITTED FROM THE FINAL REMARK 3 REFINEMENT. REMARK 4 REMARK 4 2QE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97925 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29798 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.761 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : 0.92000 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NACL, 10.0% PEG 3000, REMARK 280 0.1M PHOSPHATE CITRATE PH 4.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.68200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.59200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.59200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.84100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.59200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.59200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 188.52300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.59200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.59200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.84100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.59200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.59200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 188.52300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 125.68200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF REMARK 300 A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 SER A 94 REMARK 465 ASP A 95 REMARK 465 GLN A 96 REMARK 465 ILE A 97 REMARK 465 LYS A 98 REMARK 465 ASP A 99 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 THR B 152 REMARK 465 LEU B 153 REMARK 465 LYS B 154 REMARK 465 PRO B 155 REMARK 465 ILE B 156 REMARK 465 HIS B 157 REMARK 465 SER B 158 REMARK 465 TYR B 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -8 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A -6 CG CD OE1 OE2 REMARK 470 GLN A -1 CD OE1 NE2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 29 CE NZ REMARK 470 ILE A 62 CG1 CG2 CD1 REMARK 470 GLU A 100 CD OE1 OE2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 LYS A 140 CD CE NZ REMARK 470 GLU B 25 CD OE1 OE2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 ILE B 62 CG1 CG2 CD1 REMARK 470 LYS B 76 CD CE NZ REMARK 470 LYS B 140 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -8 -70.87 -86.95 REMARK 500 HIS A -7 124.88 70.07 REMARK 500 GLU A 36 -16.28 71.77 REMARK 500 GLU B 36 -30.59 71.55 REMARK 500 ASP B 61 -78.28 -56.33 REMARK 500 ILE B 62 85.82 58.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 44 NE2 REMARK 620 2 HIS A 124 NE2 91.4 REMARK 620 3 HIS A 128 NE2 97.0 97.2 REMARK 620 4 CIT A 201 O7 92.1 171.7 89.7 REMARK 620 5 CIT A 201 O1 169.4 97.2 88.2 78.6 REMARK 620 6 CIT A 201 O5 87.6 92.2 169.3 80.4 85.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 44 NE2 REMARK 620 2 HIS B 124 NE2 93.5 REMARK 620 3 HIS B 128 NE2 97.2 94.1 REMARK 620 4 CIT B 201 O7 92.3 169.5 93.9 REMARK 620 5 CIT B 201 O1 172.0 94.6 82.8 79.7 REMARK 620 6 CIT B 201 O5 90.1 94.2 168.6 77.0 88.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374687 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 2QE9 A 1 159 UNP Q7WY73 YIZA_BACSU 1 159 DBREF 2QE9 B 1 159 UNP Q7WY73 YIZA_BACSU 1 159 SEQADV 2QE9 MSE A -18 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 GLY A -17 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 SER A -16 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 ASP A -15 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 LYS A -14 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 ILE A -13 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS A -12 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS A -11 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS A -10 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS A -9 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS A -8 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS A -7 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 GLU A -6 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 ASN A -5 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 LEU A -4 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 TYR A -3 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 PHE A -2 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 GLN A -1 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 GLY A 0 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 MSE A 1 UNP Q7WY73 MET 1 MODIFIED RESIDUE SEQADV 2QE9 MSE A 2 UNP Q7WY73 MET 2 MODIFIED RESIDUE SEQADV 2QE9 MSE B -18 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 GLY B -17 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 SER B -16 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 ASP B -15 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 LYS B -14 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 ILE B -13 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS B -12 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS B -11 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS B -10 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS B -9 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS B -8 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 HIS B -7 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 GLU B -6 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 ASN B -5 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 LEU B -4 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 TYR B -3 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 PHE B -2 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 GLN B -1 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 GLY B 0 UNP Q7WY73 EXPRESSION TAG SEQADV 2QE9 MSE B 1 UNP Q7WY73 MET 1 MODIFIED RESIDUE SEQADV 2QE9 MSE B 2 UNP Q7WY73 MET 2 MODIFIED RESIDUE SEQRES 1 A 178 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 178 ASN LEU TYR PHE GLN GLY MSE MSE LYS PHE PHE GLU TYR SEQRES 3 A 178 ASN TRP GLN VAL ARG ASP GLN TRP PHE THR TRP CYS HIS SEQRES 4 A 178 GLN LEU THR THR GLU GLU LEU LEU LYS ASN ARG LEU GLY SEQRES 5 A 178 GLY VAL GLU ASN ILE LEU TYR THR LEU PHE HIS ILE ILE SEQRES 6 A 178 ASP VAL GLU TYR SER TRP ILE ARG ALA ILE GLN GLY LYS SEQRES 7 A 178 GLU ASP ILE ALA VAL GLN PHE ALA ASP TYR GLN THR LEU SEQRES 8 A 178 ASN LYS VAL LYS SER LEU SER ASN THR PHE ARG THR GLU SEQRES 9 A 178 ILE ILE ASP VAL LEU GLN THR HIS SER ASP GLN ILE LYS SEQRES 10 A 178 ASP GLU LEU VAL SER VAL PRO TRP GLU THR GLY VAL LEU SEQRES 11 A 178 TYR THR ARG ASP GLU ILE LEU HIS HIS ILE ILE ALA HIS SEQRES 12 A 178 GLU ILE HIS HIS ILE GLY GLN LEU SER VAL TRP ALA ARG SEQRES 13 A 178 GLU LEU LYS LEU SER PRO VAL SER ALA SER PHE ILE GLY SEQRES 14 A 178 ARG THR LEU LYS PRO ILE HIS SER TYR SEQRES 1 B 178 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 178 ASN LEU TYR PHE GLN GLY MSE MSE LYS PHE PHE GLU TYR SEQRES 3 B 178 ASN TRP GLN VAL ARG ASP GLN TRP PHE THR TRP CYS HIS SEQRES 4 B 178 GLN LEU THR THR GLU GLU LEU LEU LYS ASN ARG LEU GLY SEQRES 5 B 178 GLY VAL GLU ASN ILE LEU TYR THR LEU PHE HIS ILE ILE SEQRES 6 B 178 ASP VAL GLU TYR SER TRP ILE ARG ALA ILE GLN GLY LYS SEQRES 7 B 178 GLU ASP ILE ALA VAL GLN PHE ALA ASP TYR GLN THR LEU SEQRES 8 B 178 ASN LYS VAL LYS SER LEU SER ASN THR PHE ARG THR GLU SEQRES 9 B 178 ILE ILE ASP VAL LEU GLN THR HIS SER ASP GLN ILE LYS SEQRES 10 B 178 ASP GLU LEU VAL SER VAL PRO TRP GLU THR GLY VAL LEU SEQRES 11 B 178 TYR THR ARG ASP GLU ILE LEU HIS HIS ILE ILE ALA HIS SEQRES 12 B 178 GLU ILE HIS HIS ILE GLY GLN LEU SER VAL TRP ALA ARG SEQRES 13 B 178 GLU LEU LYS LEU SER PRO VAL SER ALA SER PHE ILE GLY SEQRES 14 B 178 ARG THR LEU LYS PRO ILE HIS SER TYR MODRES 2QE9 MSE A 1 MET SELENOMETHIONINE MODRES 2QE9 MSE A 2 MET SELENOMETHIONINE MODRES 2QE9 MSE B 1 MET SELENOMETHIONINE MODRES 2QE9 MSE B 2 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 2 8 HET MSE B 1 8 HET MSE B 2 8 HET NI A 200 1 HET CIT A 201 13 HET EDO A 202 4 HET NI B 200 1 HET CIT B 201 13 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 NI 2(NI 2+) FORMUL 4 CIT 2(C6 H8 O7) FORMUL 5 EDO C2 H6 O2 FORMUL 8 HOH *235(H2 O) HELIX 1 1 ASN A -5 CYS A 19 1 25 HELIX 2 2 HIS A 20 LEU A 22 5 3 HELIX 3 3 THR A 23 LYS A 29 1 7 HELIX 4 4 ASN A 37 GLY A 58 1 22 HELIX 5 5 GLN A 65 TYR A 69 5 5 HELIX 6 6 THR A 71 GLN A 91 1 21 HELIX 7 7 THR A 113 LEU A 139 1 27 HELIX 8 8 PRO A 155 TYR A 159 5 5 HELIX 9 9 ASN B -5 HIS B 20 1 26 HELIX 10 10 THR B 23 LYS B 29 1 7 HELIX 11 11 ASN B 37 GLY B 58 1 22 HELIX 12 12 GLN B 65 TYR B 69 5 5 HELIX 13 13 THR B 71 HIS B 93 1 23 HELIX 14 14 ARG B 114 LEU B 139 1 26 SHEET 1 A 2 VAL A 102 SER A 103 0 SHEET 2 A 2 LEU A 111 TYR A 112 -1 O TYR A 112 N VAL A 102 SHEET 1 B 2 LEU B 101 SER B 103 0 SHEET 2 B 2 LEU B 111 THR B 113 -1 O TYR B 112 N VAL B 102 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N MSE A 2 1555 1555 1.34 LINK C MSE A 2 N LYS A 3 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N MSE B 2 1555 1555 1.33 LINK C MSE B 2 N LYS B 3 1555 1555 1.34 LINK NE2 HIS A 44 NI NI A 200 1555 1555 2.11 LINK NE2 HIS A 124 NI NI A 200 1555 1555 2.19 LINK NE2 HIS A 128 NI NI A 200 1555 1555 2.18 LINK NI NI A 200 O7 CIT A 201 1555 1555 2.19 LINK NI NI A 200 O1 CIT A 201 1555 1555 2.11 LINK NI NI A 200 O5 CIT A 201 1555 1555 2.15 LINK NE2 HIS B 44 NI NI B 200 1555 1555 2.09 LINK NE2 HIS B 124 NI NI B 200 1555 1555 2.13 LINK NE2 HIS B 128 NI NI B 200 1555 1555 2.12 LINK NI NI B 200 O7 CIT B 201 1555 1555 2.13 LINK NI NI B 200 O1 CIT B 201 1555 1555 2.10 LINK NI NI B 200 O5 CIT B 201 1555 1555 2.16 SITE 1 AC1 4 HIS A 44 HIS A 124 HIS A 128 CIT A 201 SITE 1 AC2 4 HIS B 44 HIS B 124 HIS B 128 CIT B 201 SITE 1 AC3 8 VAL A 35 HIS A 44 HIS A 124 HIS A 128 SITE 2 AC3 8 NI A 200 HOH A 274 HOH A 299 HOH A 300 SITE 1 AC4 9 EDO A 202 VAL B 35 HIS B 44 HIS B 124 SITE 2 AC4 9 HIS B 127 HIS B 128 NI B 200 HOH B 290 SITE 3 AC4 9 HOH B 312 SITE 1 AC5 6 ALA A 146 SER A 147 PHE A 148 HIS B 120 SITE 2 AC5 6 HIS B 124 CIT B 201 CRYST1 53.184 53.184 251.364 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018803 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003978 0.00000