HEADER UNKNOWN FUNCTION 26-JUN-07 2QEN TITLE THE WALKER-TYPE ATPASE PABY2304 OF PYROCOCCUS ABYSSI COMPND MOL_ID: 1; COMPND 2 MOLECULE: WALKER-TYPE ATPASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_COMMON: ARCHAEA; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS PYROCOCCUS ABYSSI, ATPASE, WALKER-TYPE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.UHRING,G.BEY,O.LECOMPTE,D.MORAS,O.POCH,J.CAVARELLI REVDAT 5 21-FEB-24 2QEN 1 REMARK REVDAT 4 20-OCT-21 2QEN 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2QEN 1 VERSN REVDAT 2 24-FEB-09 2QEN 1 VERSN REVDAT 1 01-JUL-08 2QEN 0 JRNL AUTH M.UHRING,G.BEY,O.LECOMPTE,D.MORAS,O.POCH,J.CAVARELLI JRNL TITL THE WALKER-TYPE ATPASE PABY2304 OF PYROCOCCUS ABYSSI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.UHRING,G.BEY,O.LECOMPTE,J.CAVARELLI,D.MORAS,O.POCH REMARK 1 TITL CLONING, PURIFICATION AND CRYSTALLIZATION OF A WALKER-TYPE REMARK 1 TITL 2 PYROCOCCUS ABYSSI ATPASE FAMILY MEMBER. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 925 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16511197 REMARK 1 DOI 10.1107/S174430910502868X REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 18280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1239 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.52000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.331 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2954 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3987 ; 1.314 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 5.427 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;32.005 ;22.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;17.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.017 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 441 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2203 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1259 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2014 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 157 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1814 ; 0.570 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2810 ; 0.935 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1313 ; 1.610 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1177 ; 2.586 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 71 REMARK 3 RESIDUE RANGE : A 999 A 999 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7150 7.6530 21.4740 REMARK 3 T TENSOR REMARK 3 T11: -0.0734 T22: -0.0858 REMARK 3 T33: -0.1334 T12: -0.0061 REMARK 3 T13: 0.0041 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.1841 L22: 2.0039 REMARK 3 L33: 5.7701 L12: -1.5193 REMARK 3 L13: 0.9077 L23: -1.6902 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: -0.1292 S13: -0.1394 REMARK 3 S21: -0.0981 S22: -0.0477 S23: -0.1288 REMARK 3 S31: 0.2674 S32: -0.0645 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1270 16.8690 6.6680 REMARK 3 T TENSOR REMARK 3 T11: -0.0134 T22: 0.0875 REMARK 3 T33: -0.0146 T12: -0.0039 REMARK 3 T13: 0.0422 T23: 0.1044 REMARK 3 L TENSOR REMARK 3 L11: 5.1662 L22: 12.6830 REMARK 3 L33: 4.7701 L12: -4.1368 REMARK 3 L13: 0.6524 L23: 3.4450 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: 0.2844 S13: 0.0259 REMARK 3 S21: -0.2442 S22: 0.1150 S23: -0.6703 REMARK 3 S31: -0.2063 S32: 1.0556 S33: -0.1324 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3480 19.9380 11.8140 REMARK 3 T TENSOR REMARK 3 T11: 0.0332 T22: -0.1348 REMARK 3 T33: -0.1767 T12: 0.0673 REMARK 3 T13: -0.0013 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.5133 L22: 1.5312 REMARK 3 L33: 4.2163 L12: 0.0667 REMARK 3 L13: 0.8528 L23: -0.7655 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: -0.0666 S13: 0.1761 REMARK 3 S21: -0.1598 S22: 0.0049 S23: 0.0542 REMARK 3 S31: -0.5892 S32: -0.3356 S33: 0.0922 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0250 -0.3750 41.5900 REMARK 3 T TENSOR REMARK 3 T11: -0.1780 T22: -0.0868 REMARK 3 T33: -0.1986 T12: -0.0191 REMARK 3 T13: 0.0147 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 3.7497 L22: 4.3407 REMARK 3 L33: 6.0501 L12: -0.9840 REMARK 3 L13: 0.5158 L23: -3.1350 REMARK 3 S TENSOR REMARK 3 S11: 0.0740 S12: -0.2404 S13: -0.2112 REMARK 3 S21: -0.1363 S22: 0.1298 S23: 0.0083 REMARK 3 S31: 0.4697 S32: -0.2825 S33: -0.2038 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 272 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9460 23.2620 42.4210 REMARK 3 T TENSOR REMARK 3 T11: -0.1343 T22: -0.0416 REMARK 3 T33: -0.1521 T12: 0.0086 REMARK 3 T13: 0.0286 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 5.0417 L22: 4.0161 REMARK 3 L33: 4.7597 L12: -3.1376 REMARK 3 L13: -1.6063 L23: 0.4142 REMARK 3 S TENSOR REMARK 3 S11: 0.2716 S12: 0.0222 S13: 0.2140 REMARK 3 S21: -0.2303 S22: -0.1852 S23: -0.1659 REMARK 3 S31: -0.1882 S32: 0.2221 S33: -0.0864 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QEN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2836,0.849972 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18280 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 28.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : 0.12000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 297K, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.30700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.59750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.30700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.59750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PHE A 95 NH2 ARG A 114 4545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 -121.84 39.99 REMARK 500 ARG A 41 4.40 81.48 REMARK 500 HIS A 71 149.23 -170.59 REMARK 500 LEU A 162 75.88 -117.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 910 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 45 OG REMARK 620 2 ADP A 999 O2B 91.5 REMARK 620 3 HOH A1004 O 165.9 97.9 REMARK 620 4 HOH A1007 O 92.9 90.0 97.5 REMARK 620 5 HOH A1008 O 85.1 86.7 85.0 176.2 REMARK 620 6 HOH A1010 O 85.2 171.8 84.0 97.6 85.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 999 DBREF 2QEN A 1 350 UNP Q9V2L3 Q9V2L3_PYRAB 1 350 SEQADV 2QEN SER A 21 UNP Q9V2L3 PHE 21 ENGINEERED MUTATION SEQRES 1 A 350 MET LEU PHE ASP LEU ARG PRO LYS THR ARG ARG GLU ASP SEQRES 2 A 350 ILE PHE ASP ARG GLU GLU GLU SER ARG LYS LEU GLU GLU SEQRES 3 A 350 SER LEU GLU ASN TYR PRO LEU THR LEU LEU LEU GLY ILE SEQRES 4 A 350 ARG ARG VAL GLY LYS SER SER LEU LEU ARG ALA PHE LEU SEQRES 5 A 350 ASN GLU ARG PRO GLY ILE LEU ILE ASP CYS ARG GLU LEU SEQRES 6 A 350 TYR ALA GLU ARG GLY HIS ILE THR ARG GLU GLU LEU ILE SEQRES 7 A 350 LYS GLU LEU GLN SER THR ILE SER PRO PHE GLN LYS PHE SEQRES 8 A 350 GLN SER LYS PHE LYS ILE SER LEU ASN LEU LYS PHE LEU SEQRES 9 A 350 THR LEU GLU PRO ARG LYS LEU SER LEU ARG GLU VAL PHE SEQRES 10 A 350 ARG GLU LEU ASN ASP LEU GLY GLU GLU LEU GLY GLU PHE SEQRES 11 A 350 ILE VAL ALA PHE ASP GLU ALA GLN TYR LEU ARG PHE TYR SEQRES 12 A 350 GLY SER ARG GLY GLY LYS GLU LEU LEU ALA LEU PHE ALA SEQRES 13 A 350 TYR ALA TYR ASP SER LEU PRO ASN LEU LYS ILE ILE LEU SEQRES 14 A 350 THR GLY SER GLU VAL GLY LEU LEU HIS ASP PHE LEU LYS SEQRES 15 A 350 ILE THR ASP TYR GLU SER PRO LEU TYR GLY ARG ILE ALA SEQRES 16 A 350 GLY GLU VAL LEU VAL LYS PRO PHE ASP LYS ASP THR SER SEQRES 17 A 350 VAL GLU PHE LEU LYS ARG GLY PHE ARG GLU VAL ASN LEU SEQRES 18 A 350 ASP VAL PRO GLU ASN GLU ILE GLU GLU ALA VAL GLU LEU SEQRES 19 A 350 LEU ASP GLY ILE PRO GLY TRP LEU VAL VAL PHE GLY VAL SEQRES 20 A 350 GLU TYR LEU ARG ASN GLY ASP PHE GLY ARG ALA MET LYS SEQRES 21 A 350 ARG THR LEU GLU VAL ALA LYS GLY LEU ILE MET GLY GLU SEQRES 22 A 350 LEU GLU GLU LEU ARG ARG ARG SER PRO ARG TYR VAL ASP SEQRES 23 A 350 ILE LEU ARG ALA ILE ALA LEU GLY TYR ASN ARG TRP SER SEQRES 24 A 350 LEU ILE ARG ASP TYR LEU ALA VAL LYS GLY THR LYS ILE SEQRES 25 A 350 PRO GLU PRO ARG LEU TYR ALA LEU LEU GLU ASN LEU LYS SEQRES 26 A 350 LYS MET ASN TRP ILE VAL GLU GLU ASP ASN THR TYR LYS SEQRES 27 A 350 ILE ALA ASP PRO VAL VAL ALA THR VAL LEU ARG ILE HET MG A 910 1 HET ADP A 999 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *186(H2 O) HELIX 1 1 ARG A 10 ILE A 14 5 5 HELIX 2 2 ARG A 17 TYR A 31 1 15 HELIX 3 3 GLY A 43 ARG A 55 1 13 HELIX 4 4 CYS A 62 GLU A 68 1 7 HELIX 5 5 THR A 73 ILE A 85 1 13 HELIX 6 6 PRO A 87 LYS A 96 1 10 HELIX 7 7 LEU A 101 THR A 105 5 5 HELIX 8 8 GLU A 107 LEU A 111 5 5 HELIX 9 9 SER A 112 GLY A 128 1 17 HELIX 10 10 GLU A 136 TYR A 143 5 8 HELIX 11 11 GLY A 148 LEU A 162 1 15 HELIX 12 12 GLU A 173 LYS A 182 1 10 HELIX 13 13 ASP A 204 GLU A 218 1 15 HELIX 14 14 PRO A 224 ASP A 236 1 13 HELIX 15 15 ILE A 238 GLY A 253 1 16 HELIX 16 16 ASP A 254 SER A 281 1 28 HELIX 17 17 SER A 281 LEU A 293 1 13 HELIX 18 18 ARG A 297 LYS A 308 1 12 HELIX 19 19 PRO A 313 MET A 327 1 15 HELIX 20 20 ASP A 341 ARG A 349 1 9 SHEET 1 A 5 GLY A 57 ASP A 61 0 SHEET 2 A 5 PHE A 130 ASP A 135 1 O ALA A 133 N ILE A 60 SHEET 3 A 5 LEU A 165 GLY A 171 1 O ILE A 168 N PHE A 134 SHEET 4 A 5 LEU A 33 LEU A 37 1 N LEU A 36 O LEU A 169 SHEET 5 A 5 GLY A 196 LEU A 199 1 O VAL A 198 N LEU A 35 SHEET 1 B 2 ILE A 330 GLU A 333 0 SHEET 2 B 2 THR A 336 ILE A 339 -1 O THR A 336 N GLU A 333 LINK OG SER A 45 MG MG A 910 1555 1555 2.31 LINK MG MG A 910 O2B ADP A 999 1555 1555 2.17 LINK MG MG A 910 O HOH A1004 1555 1555 2.22 LINK MG MG A 910 O HOH A1007 1555 1555 2.15 LINK MG MG A 910 O HOH A1008 1555 1555 2.12 LINK MG MG A 910 O HOH A1010 1555 1555 2.11 CISPEP 1 SER A 86 PRO A 87 0 -9.52 SITE 1 AC1 5 SER A 45 HOH A1004 HOH A1007 HOH A1008 SITE 2 AC1 5 HOH A1010 SITE 1 AC2 21 LEU A 2 LYS A 8 ILE A 14 PHE A 15 SITE 2 AC2 21 ARG A 17 ARG A 41 GLY A 43 LYS A 44 SITE 3 AC2 21 SER A 45 SER A 46 PHE A 211 PRO A 239 SITE 4 AC2 21 GLY A 240 HOH A1004 HOH A1007 HOH A1008 SITE 5 AC2 21 HOH A1015 HOH A1024 HOH A1028 HOH A1053 SITE 6 AC2 21 HOH A1066 CRYST1 80.614 49.195 108.863 90.00 98.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012405 0.000000 0.001765 0.00000 SCALE2 0.000000 0.020327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009278 0.00000