HEADER HYDROLASE 26-JUN-07 2QEQ TITLE CRYSTAL STRUCTURE OF KUNJIN VIRUS NS3 HELICASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIVIRIN PROTEASE NS3 CATALYTIC SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1691-2124 OF THE VIRUS POLYPROTEIN; COMPND 5 SYNONYM: NS3 HELICASE; COMPND 6 EC: 3.4.21.91; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KUNJIN VIRUS (STRAIN MRM61C); SOURCE 3 ORGANISM_TAXID: 11078; SOURCE 4 STRAIN: MRM61C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 OTHER_DETAILS: PART OF GENOME POLYPROTEIN KEYWDS HELICASE; FLAVIVIRUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MILANI,E.MASTRANGELO,M.BOLOGNESI REVDAT 4 30-AUG-23 2QEQ 1 REMARK REVDAT 3 24-FEB-09 2QEQ 1 VERSN REVDAT 2 20-NOV-07 2QEQ 1 JRNL REVDAT 1 14-AUG-07 2QEQ 0 JRNL AUTH E.MASTRANGELO,M.MILANI,M.BOLLATI,B.SELISKO,F.PEYRANE, JRNL AUTH 2 V.PANDINI,G.SORRENTINO,B.CANARD,P.V.KONAREV,D.I.SVERGUN, JRNL AUTH 3 X.DE LAMBALLERIE,B.COUTARD,A.A.KHROMYKH,M.BOLOGNESI JRNL TITL CRYSTAL STRUCTURE AND ACTIVITY OF KUNJIN VIRUS NS3 HELICASE; JRNL TITL 2 PROTEASE AND HELICASE DOMAIN ASSEMBLY IN THE FULL LENGTH NS3 JRNL TITL 3 PROTEIN JRNL REF J.MOL.BIOL. V. 372 444 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17658551 JRNL DOI 10.1016/J.JMB.2007.06.055 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.331 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 925 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1256 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.88000 REMARK 3 B22 (A**2) : -2.71000 REMARK 3 B33 (A**2) : 4.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.640 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.871 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.756 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6529 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8847 ; 0.991 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 796 ; 6.541 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 314 ;41.185 ;22.898 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1109 ;18.991 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 70 ;15.418 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 976 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4988 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2597 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4373 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 140 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.237 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.079 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4014 ; 1.516 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6485 ; 2.838 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2515 ; 3.122 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2362 ; 5.009 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : LIQUID-NITROGEN-COOLED CHANNEL REMARK 200 -CUT SILICON [111] MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17953 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.60900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2BMF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000 10%, NA ACETATE 0.2 M, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.06450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.04750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.06450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.04750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 186 REMARK 465 VAL A 248 REMARK 465 ALA A 249 REMARK 465 ARG A 250 REMARK 465 GLU A 251 REMARK 465 HIS A 252 REMARK 465 LYS A 389 REMARK 465 SER A 390 REMARK 465 TYR A 391 REMARK 465 GLU A 392 REMARK 465 THR A 393 REMARK 465 GLU A 394 REMARK 465 TYR A 395 REMARK 465 PRO A 396 REMARK 465 LYS A 397 REMARK 465 CYS A 398 REMARK 465 LYS A 399 REMARK 465 LYS A 618 REMARK 465 ARG A 619 REMARK 465 LYS B 186 REMARK 465 LEU B 194 REMARK 465 HIS B 195 REMARK 465 PRO B 196 REMARK 465 GLY B 197 REMARK 465 ALA B 198 REMARK 465 GLY B 199 REMARK 465 ALA B 247 REMARK 465 VAL B 248 REMARK 465 ALA B 249 REMARK 465 ARG B 250 REMARK 465 GLU B 251 REMARK 465 HIS B 252 REMARK 465 ASN B 253 REMARK 465 ASN B 346 REMARK 465 SER B 347 REMARK 465 GLY B 348 REMARK 465 ARG B 388 REMARK 465 LYS B 389 REMARK 465 SER B 390 REMARK 465 TYR B 391 REMARK 465 GLU B 392 REMARK 465 THR B 393 REMARK 465 GLU B 394 REMARK 465 TYR B 395 REMARK 465 PRO B 396 REMARK 465 LYS B 397 REMARK 465 CYS B 398 REMARK 465 LYS B 399 REMARK 465 ASN B 400 REMARK 465 ASP B 401 REMARK 465 ASP B 402 REMARK 465 GLU B 413 REMARK 465 MET B 414 REMARK 465 GLY B 415 REMARK 465 ALA B 416 REMARK 465 ASN B 417 REMARK 465 ASN B 465 REMARK 465 PRO B 466 REMARK 465 SER B 467 REMARK 465 GLN B 468 REMARK 465 ALA B 469 REMARK 465 GLY B 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 193 32.62 -74.21 REMARK 500 LEU A 194 104.82 -53.82 REMARK 500 PRO A 196 156.28 -44.34 REMARK 500 ALA A 198 47.89 -77.36 REMARK 500 LEU A 236 42.88 -102.23 REMARK 500 SER A 246 54.04 79.33 REMARK 500 THR A 316 147.08 -178.58 REMARK 500 ASN A 330 -71.62 -56.60 REMARK 500 ASN A 387 -58.57 -125.22 REMARK 500 ASP A 401 -51.13 -135.00 REMARK 500 ILE A 411 0.78 -68.34 REMARK 500 MET A 414 -161.71 53.70 REMARK 500 GLU A 439 5.10 -152.76 REMARK 500 SER A 484 -36.84 -38.88 REMARK 500 ARG A 561 18.97 -60.34 REMARK 500 PHE A 565 -36.33 -137.01 REMARK 500 ASP A 566 59.46 -91.19 REMARK 500 ASP A 576 -68.49 -93.40 REMARK 500 ASN A 577 34.28 -150.73 REMARK 500 LYS A 585 91.10 -62.31 REMARK 500 LEU A 586 23.51 46.07 REMARK 500 LEU B 236 10.53 -140.68 REMARK 500 PRO B 240 93.41 -66.36 REMARK 500 PHE B 289 109.52 -56.34 REMARK 500 THR B 290 34.19 -87.73 REMARK 500 SER B 329 -162.84 -112.40 REMARK 500 ARG B 343 -151.25 -93.43 REMARK 500 ILE B 411 -143.34 -109.11 REMARK 500 ALA B 420 -162.40 -112.94 REMARK 500 ASP B 483 -31.40 -148.05 REMARK 500 SER B 484 -35.69 -36.90 REMARK 500 ASN B 503 -8.92 54.26 REMARK 500 CYS B 564 1.14 -69.76 REMARK 500 PHE B 565 -26.90 -141.46 REMARK 500 ASP B 566 39.41 -94.70 REMARK 500 GLU B 575 -86.14 -121.30 REMARK 500 ASN B 577 45.55 37.65 REMARK 500 SER B 603 -70.03 -68.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 245 SER A 246 132.94 REMARK 500 SER A 246 ALA A 247 136.92 REMARK 500 ARG B 202 ARG B 203 -149.00 REMARK 500 REMARK 500 REMARK: NULL DBREF 2QEQ A 186 619 UNP P14335 POLG_KUNJM 1691 2124 DBREF 2QEQ B 186 619 UNP P14335 POLG_KUNJM 1691 2124 SEQRES 1 A 434 LYS LYS GLN ILE THR VAL LEU ASP LEU HIS PRO GLY ALA SEQRES 2 A 434 GLY LYS THR ARG ARG ILE LEU PRO GLN ILE ILE LYS GLU SEQRES 3 A 434 ALA ILE ASN ARG ARG LEU ARG THR ALA VAL LEU ALA PRO SEQRES 4 A 434 THR ARG VAL VAL ALA ALA GLU MET ALA GLU ALA LEU ARG SEQRES 5 A 434 GLY LEU PRO ILE ARG TYR GLN THR SER ALA VAL ALA ARG SEQRES 6 A 434 GLU HIS ASN GLY ASN GLU ILE VAL ASP VAL MET CYS HIS SEQRES 7 A 434 ALA THR LEU THR HIS ARG LEU MET SER PRO HIS ARG VAL SEQRES 8 A 434 PRO ASN TYR ASN LEU PHE VAL MET ASP GLU ALA HIS PHE SEQRES 9 A 434 THR ASP PRO ALA SER ILE ALA ALA ARG GLY TYR ILE SER SEQRES 10 A 434 THR ARG VAL GLU LEU GLY GLU ALA ALA ALA ILE PHE MET SEQRES 11 A 434 THR ALA THR PRO PRO GLY THR SER ASP PRO PHE PRO GLU SEQRES 12 A 434 SER ASN ALA PRO ILE SER ASP LEU GLN THR GLU ILE PRO SEQRES 13 A 434 ASP ARG ALA TRP ASN SER GLY TYR GLU TRP ILE THR GLU SEQRES 14 A 434 TYR ILE GLY LYS THR VAL TRP PHE VAL PRO SER VAL LYS SEQRES 15 A 434 MET GLY ASN GLU ILE ALA LEU CYS LEU GLN ARG ALA GLY SEQRES 16 A 434 LYS LYS VAL ILE GLN LEU ASN ARG LYS SER TYR GLU THR SEQRES 17 A 434 GLU TYR PRO LYS CYS LYS ASN ASP ASP TRP ASP PHE VAL SEQRES 18 A 434 VAL THR THR ASP ILE SER GLU MET GLY ALA ASN PHE LYS SEQRES 19 A 434 ALA SER ARG VAL ILE ASP SER ARG LYS SER VAL LYS PRO SEQRES 20 A 434 THR ILE ILE THR GLU GLY GLU GLY ARG VAL ILE LEU GLY SEQRES 21 A 434 GLU PRO SER ALA VAL THR ALA ALA SER ALA ALA GLN ARG SEQRES 22 A 434 ARG GLY ARG THR GLY ARG ASN PRO SER GLN ALA GLY ASP SEQRES 23 A 434 GLU TYR CYS TYR GLY GLY HIS THR ASN GLU ASP ASP SER SEQRES 24 A 434 ASN CYS ALA HIS TRP THR GLU ALA ARG ILE MET LEU ASP SEQRES 25 A 434 ASN ILE ASN MET PRO ASN GLY LEU ILE ALA GLN PHE TYR SEQRES 26 A 434 GLN PRO GLU ARG GLU LYS VAL TYR THR MET ASP GLY GLU SEQRES 27 A 434 TYR ARG LEU ARG GLY GLU GLU ARG LYS ASN PHE LEU GLU SEQRES 28 A 434 LEU LEU ARG THR ALA ASP LEU PRO VAL TRP LEU ALA TYR SEQRES 29 A 434 LYS VAL ALA ALA ALA GLY VAL SER TYR HIS ASP ARG ARG SEQRES 30 A 434 TRP CYS PHE ASP GLY PRO ARG THR ASN THR ILE LEU GLU SEQRES 31 A 434 ASP ASN ASN GLU VAL GLU VAL ILE THR LYS LEU GLY GLU SEQRES 32 A 434 ARG LYS ILE LEU ARG PRO ARG TRP ILE ASP ALA ARG VAL SEQRES 33 A 434 TYR SER ASP HIS GLN ALA LEU LYS SER PHE LYS ASP PHE SEQRES 34 A 434 ALA SER GLY LYS ARG SEQRES 1 B 434 LYS LYS GLN ILE THR VAL LEU ASP LEU HIS PRO GLY ALA SEQRES 2 B 434 GLY LYS THR ARG ARG ILE LEU PRO GLN ILE ILE LYS GLU SEQRES 3 B 434 ALA ILE ASN ARG ARG LEU ARG THR ALA VAL LEU ALA PRO SEQRES 4 B 434 THR ARG VAL VAL ALA ALA GLU MET ALA GLU ALA LEU ARG SEQRES 5 B 434 GLY LEU PRO ILE ARG TYR GLN THR SER ALA VAL ALA ARG SEQRES 6 B 434 GLU HIS ASN GLY ASN GLU ILE VAL ASP VAL MET CYS HIS SEQRES 7 B 434 ALA THR LEU THR HIS ARG LEU MET SER PRO HIS ARG VAL SEQRES 8 B 434 PRO ASN TYR ASN LEU PHE VAL MET ASP GLU ALA HIS PHE SEQRES 9 B 434 THR ASP PRO ALA SER ILE ALA ALA ARG GLY TYR ILE SER SEQRES 10 B 434 THR ARG VAL GLU LEU GLY GLU ALA ALA ALA ILE PHE MET SEQRES 11 B 434 THR ALA THR PRO PRO GLY THR SER ASP PRO PHE PRO GLU SEQRES 12 B 434 SER ASN ALA PRO ILE SER ASP LEU GLN THR GLU ILE PRO SEQRES 13 B 434 ASP ARG ALA TRP ASN SER GLY TYR GLU TRP ILE THR GLU SEQRES 14 B 434 TYR ILE GLY LYS THR VAL TRP PHE VAL PRO SER VAL LYS SEQRES 15 B 434 MET GLY ASN GLU ILE ALA LEU CYS LEU GLN ARG ALA GLY SEQRES 16 B 434 LYS LYS VAL ILE GLN LEU ASN ARG LYS SER TYR GLU THR SEQRES 17 B 434 GLU TYR PRO LYS CYS LYS ASN ASP ASP TRP ASP PHE VAL SEQRES 18 B 434 VAL THR THR ASP ILE SER GLU MET GLY ALA ASN PHE LYS SEQRES 19 B 434 ALA SER ARG VAL ILE ASP SER ARG LYS SER VAL LYS PRO SEQRES 20 B 434 THR ILE ILE THR GLU GLY GLU GLY ARG VAL ILE LEU GLY SEQRES 21 B 434 GLU PRO SER ALA VAL THR ALA ALA SER ALA ALA GLN ARG SEQRES 22 B 434 ARG GLY ARG THR GLY ARG ASN PRO SER GLN ALA GLY ASP SEQRES 23 B 434 GLU TYR CYS TYR GLY GLY HIS THR ASN GLU ASP ASP SER SEQRES 24 B 434 ASN CYS ALA HIS TRP THR GLU ALA ARG ILE MET LEU ASP SEQRES 25 B 434 ASN ILE ASN MET PRO ASN GLY LEU ILE ALA GLN PHE TYR SEQRES 26 B 434 GLN PRO GLU ARG GLU LYS VAL TYR THR MET ASP GLY GLU SEQRES 27 B 434 TYR ARG LEU ARG GLY GLU GLU ARG LYS ASN PHE LEU GLU SEQRES 28 B 434 LEU LEU ARG THR ALA ASP LEU PRO VAL TRP LEU ALA TYR SEQRES 29 B 434 LYS VAL ALA ALA ALA GLY VAL SER TYR HIS ASP ARG ARG SEQRES 30 B 434 TRP CYS PHE ASP GLY PRO ARG THR ASN THR ILE LEU GLU SEQRES 31 B 434 ASP ASN ASN GLU VAL GLU VAL ILE THR LYS LEU GLY GLU SEQRES 32 B 434 ARG LYS ILE LEU ARG PRO ARG TRP ILE ASP ALA ARG VAL SEQRES 33 B 434 TYR SER ASP HIS GLN ALA LEU LYS SER PHE LYS ASP PHE SEQRES 34 B 434 ALA SER GLY LYS ARG HELIX 1 1 ARG A 203 ARG A 215 1 13 HELIX 2 2 THR A 225 LEU A 236 1 12 HELIX 3 3 HIS A 263 SER A 272 1 10 HELIX 4 4 ASP A 291 LEU A 307 1 17 HELIX 5 5 TYR A 349 TYR A 355 1 7 HELIX 6 6 SER A 365 ALA A 379 1 15 HELIX 7 7 THR A 451 GLY A 460 1 10 HELIX 8 8 CYS A 486 ASN A 498 1 13 HELIX 9 9 MET A 501 LEU A 505 5 5 HELIX 10 10 TYR A 510 VAL A 517 5 8 HELIX 11 11 GLY A 528 THR A 540 1 13 HELIX 12 12 PRO A 544 ALA A 554 1 11 HELIX 13 13 ASP A 560 PHE A 565 5 6 HELIX 14 14 PRO A 568 THR A 572 5 5 HELIX 15 15 ARG A 600 TYR A 602 5 3 HELIX 16 16 ASP A 604 GLY A 617 1 14 HELIX 17 17 ILE B 204 ARG B 215 1 12 HELIX 18 18 THR B 225 ALA B 235 1 11 HELIX 19 19 HIS B 263 SER B 272 1 10 HELIX 20 20 ASP B 291 LEU B 307 1 17 HELIX 21 21 SER B 365 ARG B 378 1 14 HELIX 22 22 THR B 451 GLY B 460 1 10 HELIX 23 23 CYS B 486 ASP B 497 1 12 HELIX 24 24 MET B 501 LEU B 505 5 5 HELIX 25 25 TYR B 510 VAL B 517 5 8 HELIX 26 26 GLY B 528 THR B 540 1 13 HELIX 27 27 PRO B 544 GLY B 555 1 12 HELIX 28 28 ARG B 561 PHE B 565 5 5 HELIX 29 29 PRO B 568 THR B 572 5 5 HELIX 30 30 ASP B 598 TYR B 602 5 5 HELIX 31 31 ASP B 604 SER B 616 1 13 SHEET 1 A 6 ILE A 189 LEU A 192 0 SHEET 2 A 6 ALA A 311 MET A 315 1 O PHE A 314 N THR A 190 SHEET 3 A 6 LEU A 281 MET A 284 1 N MET A 284 O ILE A 313 SHEET 4 A 6 THR A 219 ALA A 223 1 N LEU A 222 O VAL A 283 SHEET 5 A 6 VAL A 258 CYS A 262 1 O ASP A 259 N VAL A 221 SHEET 6 A 6 ARG A 242 TYR A 243 1 N ARG A 242 O VAL A 260 SHEET 1 B 6 SER A 334 GLN A 337 0 SHEET 2 B 6 GLU A 472 TYR A 475 1 O TYR A 473 N SER A 334 SHEET 3 B 6 ARG A 422 ASP A 425 1 N ASP A 425 O CYS A 474 SHEET 4 B 6 THR A 359 PHE A 362 1 N PHE A 362 O ILE A 424 SHEET 5 B 6 PHE A 405 THR A 408 1 O VAL A 406 N TRP A 361 SHEET 6 B 6 VAL A 383 LEU A 386 1 N ILE A 384 O VAL A 407 SHEET 1 C 2 LYS A 428 SER A 429 0 SHEET 2 C 2 SER A 448 ALA A 449 -1 O SER A 448 N SER A 429 SHEET 1 D 3 PRO A 432 ILE A 435 0 SHEET 2 D 3 ARG A 441 LEU A 444 -1 O ARG A 441 N ILE A 435 SHEET 3 D 3 ILE A 597 ASP A 598 1 O ILE A 597 N VAL A 442 SHEET 1 E 2 GLU A 581 ILE A 583 0 SHEET 2 E 2 ARG A 589 ILE A 591 -1 O LYS A 590 N VAL A 582 SHEET 1 F 6 GLN B 188 LEU B 192 0 SHEET 2 F 6 ALA B 311 MET B 315 1 O PHE B 314 N LEU B 192 SHEET 3 F 6 LEU B 281 ASP B 285 1 N MET B 284 O MET B 315 SHEET 4 F 6 THR B 219 ALA B 223 1 N LEU B 222 O ASP B 285 SHEET 5 F 6 VAL B 258 CYS B 262 1 O MET B 261 N ALA B 223 SHEET 6 F 6 ILE B 241 TYR B 243 1 N ARG B 242 O VAL B 260 SHEET 1 G 6 SER B 334 GLN B 337 0 SHEET 2 G 6 GLU B 472 TYR B 475 1 O TYR B 475 N LEU B 336 SHEET 3 G 6 ARG B 422 ASP B 425 1 N ASP B 425 O CYS B 474 SHEET 4 G 6 THR B 359 PHE B 362 1 N VAL B 360 O ILE B 424 SHEET 5 G 6 PHE B 405 THR B 408 1 O VAL B 406 N TRP B 361 SHEET 6 G 6 VAL B 383 LEU B 386 1 N ILE B 384 O VAL B 407 SHEET 1 H 2 LYS B 428 SER B 429 0 SHEET 2 H 2 SER B 448 ALA B 449 -1 O SER B 448 N SER B 429 SHEET 1 I 2 PRO B 432 THR B 436 0 SHEET 2 I 2 GLY B 440 LEU B 444 -1 O ILE B 443 N THR B 433 SHEET 1 J 2 GLU B 581 ILE B 583 0 SHEET 2 J 2 ARG B 589 ILE B 591 -1 O LYS B 590 N VAL B 582 CRYST1 172.129 38.095 148.113 90.00 96.98 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005810 0.000000 0.000711 0.00000 SCALE2 0.000000 0.026250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006802 0.00000