HEADER HYDROLASE 27-JUN-07 2QFR TITLE CRYSTAL STRUCTURE OF RED KIDNEY BEAN PURPLE ACID PHOSPHATASE WITH TITLE 2 BOUND SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURPLE ACID PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHASEOLUS VULGARIS; SOURCE 3 ORGANISM_COMMON: KIDNEY BEAN; SOURCE 4 ORGANISM_TAXID: 3885 KEYWDS BINUCLEAR METAL CENTRE, SUBSTRATE ANALOG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.W.GUDDAT,G.SCHENK,L.R.GAHAN,T.W.ELLIOT,E.LEUNG REVDAT 5 30-AUG-23 2QFR 1 HETSYN REVDAT 4 29-JUL-20 2QFR 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 2QFR 1 VERSN REVDAT 2 24-FEB-09 2QFR 1 VERSN REVDAT 1 14-OCT-08 2QFR 0 JRNL AUTH G.SCHENK,T.W.ELLIOTT,E.LEUNG,L.E.CARRINGTON,N.MITIC, JRNL AUTH 2 L.R.GAHAN,L.W.GUDDAT JRNL TITL CRYSTAL STRUCTURES OF A PURPLE ACID PHOSPHATASE, JRNL TITL 2 REPRESENTING DIFFERENT STEPS OF THIS ENZYME'S CATALYTIC JRNL TITL 3 CYCLE. JRNL REF BMC STRUCT.BIOL. V. 8 6 2008 JRNL REFN ESSN 1472-6807 JRNL PMID 18234116 JRNL DOI 10.1186/1472-6807-8-6 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.0 REMARK 3 NUMBER OF REFLECTIONS : 55092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHTOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.400 REMARK 3 FREE R VALUE TEST SET COUNT : 5612 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6974 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 401 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.95800 REMARK 3 B22 (A**2) : -1.95800 REMARK 3 B33 (A**2) : 3.91600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.045 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.733 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.907 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.947 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 31.51 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000043542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55092 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.6 REMARK 200 DATA REDUNDANCY : 2.760 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : 0.11500 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : 0.30200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: 4KBP CHAIN B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1 M ACETATE PH REMARK 280 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 74.01500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 74.01500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.04500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 74.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.02250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 74.01500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.06750 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 74.01500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.01500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.04500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 74.01500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 120.06750 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 74.01500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.02250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER WHICH CORRESPONDS TO THE REMARK 300 CONTENTS OF THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6230 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 275 O LYS B 315 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 52 -70.38 -33.33 REMARK 500 LYS A 63 -91.60 -69.93 REMARK 500 ARG A 66 106.58 -54.34 REMARK 500 PHE A 79 -82.71 -114.40 REMARK 500 PHE A 80 -98.70 -109.25 REMARK 500 ASN A 98 50.66 39.27 REMARK 500 ASN A 109 -116.73 -96.18 REMARK 500 GLN A 138 43.72 -145.04 REMARK 500 ASP A 164 89.45 65.34 REMARK 500 LEU A 165 -78.93 -84.76 REMARK 500 ASP A 175 90.70 -12.51 REMARK 500 ASN A 176 -5.96 -59.77 REMARK 500 ALA A 243 -126.96 60.01 REMARK 500 TYR A 256 28.42 -143.48 REMARK 500 HIS A 323 -51.38 64.96 REMARK 500 ALA A 326 -169.64 -171.79 REMARK 500 ILE A 340 -51.18 71.19 REMARK 500 ASN A 364 -131.12 42.37 REMARK 500 LYS A 395 -64.82 -100.57 REMARK 500 PRO A 427 52.71 -63.09 REMARK 500 LYS B 63 -83.48 -71.78 REMARK 500 ASN B 64 107.63 -59.40 REMARK 500 PHE B 79 -87.51 -100.49 REMARK 500 PHE B 80 -97.72 -105.46 REMARK 500 ASN B 98 56.66 28.61 REMARK 500 ASN B 109 -119.38 -114.64 REMARK 500 GLN B 138 47.73 -143.63 REMARK 500 LYS B 155 128.54 -34.64 REMARK 500 ASP B 164 87.82 62.15 REMARK 500 LEU B 165 -79.31 -82.50 REMARK 500 ASP B 175 90.15 -11.15 REMARK 500 SER B 189 -55.16 -120.69 REMARK 500 ALA B 243 -124.12 58.58 REMARK 500 TYR B 256 28.48 -144.68 REMARK 500 HIS B 323 -52.42 66.05 REMARK 500 ALA B 326 -167.07 -174.54 REMARK 500 ILE B 340 -50.07 69.34 REMARK 500 ASN B 364 -137.28 39.76 REMARK 500 LYS B 395 -66.06 -101.41 REMARK 500 ASN B 396 -169.06 -117.74 REMARK 500 PRO B 427 55.18 -68.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 433 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 135 OD2 REMARK 620 2 ASP A 164 OD2 86.9 REMARK 620 3 TYR A 167 OH 96.9 95.4 REMARK 620 4 HIS A 325 NE2 97.2 174.1 88.4 REMARK 620 5 HOH A 454 O 127.1 90.8 135.9 83.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 434 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 164 OD2 REMARK 620 2 ASN A 201 OD1 87.8 REMARK 620 3 HIS A 286 NE2 88.7 90.0 REMARK 620 4 HIS A 323 ND1 173.3 96.1 85.9 REMARK 620 5 HOH A 454 O 80.2 112.4 154.3 103.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 433 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 135 OD2 REMARK 620 2 ASP B 164 OD2 78.5 REMARK 620 3 TYR B 167 OH 99.4 97.1 REMARK 620 4 HIS B 325 NE2 105.8 173.5 87.1 REMARK 620 5 HOH B 454 O 120.9 85.2 139.2 88.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 434 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 164 OD2 REMARK 620 2 ASN B 201 OD1 92.0 REMARK 620 3 HIS B 286 NE2 87.5 94.0 REMARK 620 4 HIS B 323 ND1 171.7 96.2 91.6 REMARK 620 5 HOH B 454 O 78.8 115.0 148.1 97.8 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KBP RELATED DB: PDB REMARK 900 FREE ENZYME REMARK 900 RELATED ID: 4KBP RELATED DB: PDB REMARK 900 PHOSPHATE COMPLEX REMARK 900 RELATED ID: 2QFP RELATED DB: PDB REMARK 900 FLUORIDE COMPLEX DBREF 2QFR A 9 432 UNP O24319 O24319_PHAVU 36 459 DBREF 2QFR B 9 432 UNP O24319 O24319_PHAVU 36 459 SEQRES 1 A 424 ARG ASP MET PRO LEU ASP SER ASP VAL PHE ARG VAL PRO SEQRES 2 A 424 PRO GLY TYR ASN ALA PRO GLN GLN VAL HIS ILE THR GLN SEQRES 3 A 424 GLY ASP LEU VAL GLY ARG ALA MET ILE ILE SER TRP VAL SEQRES 4 A 424 THR MET ASP GLU PRO GLY SER SER ALA VAL ARG TYR TRP SEQRES 5 A 424 SER GLU LYS ASN GLY ARG LYS ARG ILE ALA LYS GLY LYS SEQRES 6 A 424 MET SER THR TYR ARG PHE PHE ASN TYR SER SER GLY PHE SEQRES 7 A 424 ILE HIS HIS THR THR ILE ARG LYS LEU LYS TYR ASN THR SEQRES 8 A 424 LYS TYR TYR TYR GLU VAL GLY LEU ARG ASN THR THR ARG SEQRES 9 A 424 ARG PHE SER PHE ILE THR PRO PRO GLN THR GLY LEU ASP SEQRES 10 A 424 VAL PRO TYR THR PHE GLY LEU ILE GLY ASP LEU GLY GLN SEQRES 11 A 424 SER PHE ASP SER ASN THR THR LEU SER HIS TYR GLU LEU SEQRES 12 A 424 SER PRO LYS LYS GLY GLN THR VAL LEU PHE VAL GLY ASP SEQRES 13 A 424 LEU SER TYR ALA ASP ARG TYR PRO ASN HIS ASP ASN VAL SEQRES 14 A 424 ARG TRP ASP THR TRP GLY ARG PHE THR GLU ARG SER VAL SEQRES 15 A 424 ALA TYR GLN PRO TRP ILE TRP THR ALA GLY ASN HIS GLU SEQRES 16 A 424 ILE GLU PHE ALA PRO GLU ILE ASN GLU THR GLU PRO PHE SEQRES 17 A 424 LYS PRO PHE SER TYR ARG TYR HIS VAL PRO TYR GLU ALA SEQRES 18 A 424 SER GLN SER THR SER PRO PHE TRP TYR SER ILE LYS ARG SEQRES 19 A 424 ALA SER ALA HIS ILE ILE VAL LEU SER SER TYR SER ALA SEQRES 20 A 424 TYR GLY ARG GLY THR PRO GLN TYR THR TRP LEU LYS LYS SEQRES 21 A 424 GLU LEU ARG LYS VAL LYS ARG SER GLU THR PRO TRP LEU SEQRES 22 A 424 ILE VAL LEU MET HIS SER PRO LEU TYR ASN SER TYR ASN SEQRES 23 A 424 HIS HIS PHE MET GLU GLY GLU ALA MET ARG THR LYS PHE SEQRES 24 A 424 GLU ALA TRP PHE VAL LYS TYR LYS VAL ASP VAL VAL PHE SEQRES 25 A 424 ALA GLY HIS VAL HIS ALA TYR GLU ARG SER GLU ARG VAL SEQRES 26 A 424 SER ASN ILE ALA TYR LYS ILE THR ASN GLY LEU CYS THR SEQRES 27 A 424 PRO VAL LYS ASP GLN SER ALA PRO VAL TYR ILE THR ILE SEQRES 28 A 424 GLY ASP ALA GLY ASN TYR GLY VAL ILE ASP SER ASN MET SEQRES 29 A 424 ILE GLN PRO GLN PRO GLU TYR SER ALA PHE ARG GLU ALA SEQRES 30 A 424 SER PHE GLY HIS GLY MET PHE ASP ILE LYS ASN ARG THR SEQRES 31 A 424 HIS ALA HIS PHE SER TRP ASN ARG ASN GLN ASP GLY VAL SEQRES 32 A 424 ALA VAL GLU ALA ASP SER VAL TRP PHE PHE ASN ARG HIS SEQRES 33 A 424 TRP TYR PRO VAL ASP ASP SER THR SEQRES 1 B 424 ARG ASP MET PRO LEU ASP SER ASP VAL PHE ARG VAL PRO SEQRES 2 B 424 PRO GLY TYR ASN ALA PRO GLN GLN VAL HIS ILE THR GLN SEQRES 3 B 424 GLY ASP LEU VAL GLY ARG ALA MET ILE ILE SER TRP VAL SEQRES 4 B 424 THR MET ASP GLU PRO GLY SER SER ALA VAL ARG TYR TRP SEQRES 5 B 424 SER GLU LYS ASN GLY ARG LYS ARG ILE ALA LYS GLY LYS SEQRES 6 B 424 MET SER THR TYR ARG PHE PHE ASN TYR SER SER GLY PHE SEQRES 7 B 424 ILE HIS HIS THR THR ILE ARG LYS LEU LYS TYR ASN THR SEQRES 8 B 424 LYS TYR TYR TYR GLU VAL GLY LEU ARG ASN THR THR ARG SEQRES 9 B 424 ARG PHE SER PHE ILE THR PRO PRO GLN THR GLY LEU ASP SEQRES 10 B 424 VAL PRO TYR THR PHE GLY LEU ILE GLY ASP LEU GLY GLN SEQRES 11 B 424 SER PHE ASP SER ASN THR THR LEU SER HIS TYR GLU LEU SEQRES 12 B 424 SER PRO LYS LYS GLY GLN THR VAL LEU PHE VAL GLY ASP SEQRES 13 B 424 LEU SER TYR ALA ASP ARG TYR PRO ASN HIS ASP ASN VAL SEQRES 14 B 424 ARG TRP ASP THR TRP GLY ARG PHE THR GLU ARG SER VAL SEQRES 15 B 424 ALA TYR GLN PRO TRP ILE TRP THR ALA GLY ASN HIS GLU SEQRES 16 B 424 ILE GLU PHE ALA PRO GLU ILE ASN GLU THR GLU PRO PHE SEQRES 17 B 424 LYS PRO PHE SER TYR ARG TYR HIS VAL PRO TYR GLU ALA SEQRES 18 B 424 SER GLN SER THR SER PRO PHE TRP TYR SER ILE LYS ARG SEQRES 19 B 424 ALA SER ALA HIS ILE ILE VAL LEU SER SER TYR SER ALA SEQRES 20 B 424 TYR GLY ARG GLY THR PRO GLN TYR THR TRP LEU LYS LYS SEQRES 21 B 424 GLU LEU ARG LYS VAL LYS ARG SER GLU THR PRO TRP LEU SEQRES 22 B 424 ILE VAL LEU MET HIS SER PRO LEU TYR ASN SER TYR ASN SEQRES 23 B 424 HIS HIS PHE MET GLU GLY GLU ALA MET ARG THR LYS PHE SEQRES 24 B 424 GLU ALA TRP PHE VAL LYS TYR LYS VAL ASP VAL VAL PHE SEQRES 25 B 424 ALA GLY HIS VAL HIS ALA TYR GLU ARG SER GLU ARG VAL SEQRES 26 B 424 SER ASN ILE ALA TYR LYS ILE THR ASN GLY LEU CYS THR SEQRES 27 B 424 PRO VAL LYS ASP GLN SER ALA PRO VAL TYR ILE THR ILE SEQRES 28 B 424 GLY ASP ALA GLY ASN TYR GLY VAL ILE ASP SER ASN MET SEQRES 29 B 424 ILE GLN PRO GLN PRO GLU TYR SER ALA PHE ARG GLU ALA SEQRES 30 B 424 SER PHE GLY HIS GLY MET PHE ASP ILE LYS ASN ARG THR SEQRES 31 B 424 HIS ALA HIS PHE SER TRP ASN ARG ASN GLN ASP GLY VAL SEQRES 32 B 424 ALA VAL GLU ALA ASP SER VAL TRP PHE PHE ASN ARG HIS SEQRES 33 B 424 TRP TYR PRO VAL ASP ASP SER THR MODRES 2QFR ASN A 143 ASN GLYCOSYLATION SITE MODRES 2QFR ASN A 396 ASN GLYCOSYLATION SITE MODRES 2QFR ASN B 81 ASN GLYCOSYLATION SITE MODRES 2QFR ASN B 109 ASN GLYCOSYLATION SITE MODRES 2QFR ASN B 143 ASN GLYCOSYLATION SITE MODRES 2QFR ASN B 396 ASN GLYCOSYLATION SITE HET FE A 433 1 HET ZN A 434 1 HET SO4 A 435 5 HET SO4 A 437 5 HET NDG A 450 15 HET NAG A 451 14 HET NAG A 452 14 HET NDG A 453 15 HET FE B 433 1 HET ZN B 434 1 HET SO4 B 435 5 HET SO4 B 437 5 HET NAG B 450 14 HET NAG B 451 14 HET NAG B 452 14 HET NAG B 453 14 HETNAM FE FE (III) ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 FE 2(FE 3+) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 NDG 2(C8 H15 N O6) FORMUL 8 NAG 6(C8 H15 N O6) FORMUL 19 HOH *401(H2 O) HELIX 1 1 SER A 15 ARG A 19 5 5 HELIX 2 2 SER A 139 SER A 152 1 14 HELIX 3 3 TYR A 167 ASP A 175 5 9 HELIX 4 4 ASN A 176 ALA A 191 1 16 HELIX 5 5 GLY A 200 ILE A 204 5 5 HELIX 6 6 ALA A 207 ASN A 211 5 5 HELIX 7 7 PHE A 216 TYR A 223 1 8 HELIX 8 8 PRO A 226 GLN A 231 5 6 HELIX 9 9 THR A 260 LYS A 272 1 13 HELIX 10 10 GLY A 300 TYR A 314 1 15 HELIX 11 11 SER B 15 ARG B 19 5 5 HELIX 12 12 SER B 139 SER B 152 1 14 HELIX 13 13 TYR B 167 ASP B 175 5 9 HELIX 14 14 ASN B 176 ALA B 191 1 16 HELIX 15 15 GLY B 200 GLU B 205 1 6 HELIX 16 16 ALA B 207 ASN B 211 5 5 HELIX 17 17 PHE B 216 TYR B 223 1 8 HELIX 18 18 PRO B 226 GLN B 231 5 6 HELIX 19 19 THR B 260 LYS B 272 1 13 HELIX 20 20 GLY B 300 TYR B 314 1 15 SHEET 1 A 4 GLN A 28 GLN A 34 0 SHEET 2 A 4 MET A 42 THR A 48 -1 O ILE A 43 N THR A 33 SHEET 3 A 4 PHE A 86 ILE A 92 -1 O THR A 90 N ILE A 44 SHEET 4 A 4 LYS A 73 SER A 75 -1 N SER A 75 O ILE A 87 SHEET 1 B 4 ARG A 68 LYS A 71 0 SHEET 2 B 4 ALA A 56 SER A 61 -1 N TYR A 59 O ARG A 68 SHEET 3 B 4 LYS A 100 VAL A 105 -1 O TYR A 102 N TRP A 60 SHEET 4 B 4 ARG A 112 ILE A 117 -1 O PHE A 116 N TYR A 101 SHEET 1 C 6 TRP A 195 TRP A 197 0 SHEET 2 C 6 THR A 158 PHE A 161 1 N VAL A 159 O ILE A 196 SHEET 3 C 6 TYR A 128 ILE A 133 1 N GLY A 131 O THR A 158 SHEET 4 C 6 GLY A 388 ILE A 394 -1 O ILE A 394 N TYR A 128 SHEET 5 C 6 HIS A 399 ARG A 406 -1 O HIS A 401 N ASP A 393 SHEET 6 C 6 ASP A 416 PHE A 421 -1 O PHE A 420 N ALA A 400 SHEET 1 D 7 TYR A 238 ARG A 242 0 SHEET 2 D 7 ALA A 245 VAL A 249 -1 O VAL A 249 N TYR A 238 SHEET 3 D 7 TRP A 280 LEU A 284 1 O LEU A 284 N ILE A 248 SHEET 4 D 7 VAL A 318 ALA A 321 1 O PHE A 320 N VAL A 283 SHEET 5 D 7 VAL A 355 ILE A 359 1 O ILE A 357 N VAL A 319 SHEET 6 D 7 TYR A 327 SER A 330 -1 N SER A 330 O TYR A 356 SHEET 7 D 7 SER A 380 GLU A 384 -1 O PHE A 382 N ARG A 329 SHEET 1 E 2 VAL A 333 SER A 334 0 SHEET 2 E 2 VAL A 348 LYS A 349 -1 O VAL A 348 N SER A 334 SHEET 1 F 4 GLN B 28 GLN B 34 0 SHEET 2 F 4 MET B 42 THR B 48 -1 O ILE B 43 N THR B 33 SHEET 3 F 4 PHE B 86 ILE B 92 -1 O THR B 90 N ILE B 44 SHEET 4 F 4 LYS B 73 SER B 75 -1 N SER B 75 O ILE B 87 SHEET 1 G 4 ARG B 68 LYS B 71 0 SHEET 2 G 4 ALA B 56 SER B 61 -1 N TYR B 59 O ARG B 68 SHEET 3 G 4 LYS B 100 VAL B 105 -1 O GLU B 104 N ARG B 58 SHEET 4 G 4 ARG B 112 ILE B 117 -1 O PHE B 116 N TYR B 101 SHEET 1 H 6 TRP B 195 ILE B 196 0 SHEET 2 H 6 THR B 158 PHE B 161 1 N VAL B 159 O ILE B 196 SHEET 3 H 6 TYR B 128 ILE B 133 1 N GLY B 131 O THR B 158 SHEET 4 H 6 GLY B 388 ILE B 394 -1 O PHE B 392 N PHE B 130 SHEET 5 H 6 HIS B 399 ARG B 406 -1 O HIS B 401 N ASP B 393 SHEET 6 H 6 ASP B 416 PHE B 421 -1 O PHE B 420 N ALA B 400 SHEET 1 I 7 TYR B 238 ARG B 242 0 SHEET 2 I 7 ALA B 245 VAL B 249 -1 O VAL B 249 N TYR B 238 SHEET 3 I 7 TRP B 280 LEU B 284 1 O LEU B 284 N ILE B 248 SHEET 4 I 7 VAL B 318 ALA B 321 1 O PHE B 320 N VAL B 283 SHEET 5 I 7 VAL B 355 ILE B 359 1 O ILE B 359 N ALA B 321 SHEET 6 I 7 TYR B 327 SER B 330 -1 N SER B 330 O TYR B 356 SHEET 7 I 7 SER B 380 GLU B 384 -1 O PHE B 382 N ARG B 329 SHEET 1 J 2 VAL B 333 SER B 334 0 SHEET 2 J 2 VAL B 348 LYS B 349 -1 O VAL B 348 N SER B 334 SSBOND 1 CYS A 345 CYS B 345 1555 1555 2.03 LINK ND2 ASN A 143 C1 NAG A 451 1555 1555 1.45 LINK ND2 ASN A 396 C1 NAG A 452 1555 1555 1.46 LINK ND2 ASN B 81 C1 NAG B 450 1555 1555 1.45 LINK ND2 ASN B 109 C1 NAG B 453 1555 1555 1.45 LINK ND2 ASN B 143 C1 NAG B 451 1555 1555 1.45 LINK ND2 ASN B 396 C1 NAG B 452 1555 1555 1.46 LINK OD2 ASP A 135 FE FE A 433 1555 1555 1.83 LINK OD2 ASP A 164 FE FE A 433 1555 1555 2.07 LINK OD2 ASP A 164 ZN ZN A 434 1555 1555 2.35 LINK OH TYR A 167 FE FE A 433 1555 1555 2.00 LINK OD1 ASN A 201 ZN ZN A 434 1555 1555 2.01 LINK NE2 HIS A 286 ZN ZN A 434 1555 1555 2.04 LINK ND1 HIS A 323 ZN ZN A 434 1555 1555 2.09 LINK NE2 HIS A 325 FE FE A 433 1555 1555 2.36 LINK FE FE A 433 O HOH A 454 1555 1555 2.21 LINK ZN ZN A 434 O HOH A 454 1555 1555 2.37 LINK OD2 ASP B 135 FE FE B 433 1555 1555 1.85 LINK OD2 ASP B 164 FE FE B 433 1555 1555 2.16 LINK OD2 ASP B 164 ZN ZN B 434 1555 1555 2.23 LINK OH TYR B 167 FE FE B 433 1555 1555 1.91 LINK OD1 ASN B 201 ZN ZN B 434 1555 1555 2.13 LINK NE2 HIS B 286 ZN ZN B 434 1555 1555 2.02 LINK ND1 HIS B 323 ZN ZN B 434 1555 1555 2.07 LINK NE2 HIS B 325 FE FE B 433 1555 1555 2.25 LINK FE FE B 433 O HOH B 454 1555 1555 2.05 LINK ZN ZN B 434 O HOH B 454 1555 1555 2.26 CISPEP 1 GLN A 374 PRO A 375 0 -1.23 CISPEP 2 GLN B 374 PRO B 375 0 0.00 CRYST1 148.030 148.030 160.090 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006246 0.00000