HEADER HYDROLASE ACTIVATOR 28-JUN-07 2QFZ TITLE CRYSTAL STRUCTURE OF HUMAN TBC1 DOMAIN FAMILY MEMBER 22A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TBC1 DOMAIN FAMILY MEMBER 22A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RAB-GAP TBC DOMAIN: RESIDUES 191-517; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TBC1D22A, C22ORF4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-MHL KEYWDS RAB-GAP, GTPASE ACTIVATOR, TBC1, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, HYDROLASE ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR Y.TONG,W.TEMPEL,S.DIMOV,A.DONG,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 30-AUG-23 2QFZ 1 REMARK SEQADV REVDAT 3 18-OCT-17 2QFZ 1 REMARK REVDAT 2 24-FEB-09 2QFZ 1 VERSN REVDAT 1 10-JUL-07 2QFZ 0 JRNL AUTH Y.TONG,W.TEMPEL,S.DIMOV,A.DONG,R.LANDRY,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF HUMAN TBC1 DOMAIN FAMILY MEMBER 22A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 39184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.229 REMARK 3 FREE R VALUE TEST SET COUNT : 2049 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2683 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59700 REMARK 3 B22 (A**2) : -0.92400 REMARK 3 B33 (A**2) : 0.19300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.05600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.234 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5041 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3441 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6861 ; 1.395 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8324 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 603 ; 5.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 237 ;37.673 ;22.827 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 833 ;14.573 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 755 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5539 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1103 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1068 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3261 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2453 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2353 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 101 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3133 ; 2.742 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1187 ; 0.770 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4889 ; 3.883 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2251 ; 2.776 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1967 ; 3.786 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ARP/WARP, MOLPROBITY, COOT PROGRAMS HAVE ALSO BEEN REMARK 3 USED IN REFINEMENT. REMARK 4 REMARK 4 2QFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39313 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.96600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2G77 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28.0% PEG400, 0.2M CALCIUM CHLORIDE, REMARK 280 0.1M SODIUM HEPES, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.75750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 SER A 180 REMARK 465 SER A 181 REMARK 465 GLY A 182 REMARK 465 ARG A 183 REMARK 465 GLU A 184 REMARK 465 ASN A 185 REMARK 465 LEU A 186 REMARK 465 TYR A 187 REMARK 465 PHE A 188 REMARK 465 GLN A 189 REMARK 465 GLY A 190 REMARK 465 SER A 191 REMARK 465 GLU A 192 REMARK 465 ARG A 193 REMARK 465 GLU A 194 REMARK 465 ALA A 195 REMARK 465 TYR A 265 REMARK 465 ASP A 266 REMARK 465 SER A 267 REMARK 465 ARG A 268 REMARK 465 ASN A 269 REMARK 465 ASP A 270 REMARK 465 GLU A 271 REMARK 465 VAL A 272 REMARK 465 ALA A 340 REMARK 465 GLU A 341 REMARK 465 GLU A 342 REMARK 465 VAL A 343 REMARK 465 ASP A 344 REMARK 465 ALA A 509 REMARK 465 ASP A 510 REMARK 465 ALA A 511 REMARK 465 PRO A 512 REMARK 465 ASN A 513 REMARK 465 HIS A 514 REMARK 465 TYR A 515 REMARK 465 LYS A 516 REMARK 465 LYS A 517 REMARK 465 MET B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 465 HIS B 178 REMARK 465 HIS B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 465 GLY B 182 REMARK 465 ARG B 183 REMARK 465 GLU B 184 REMARK 465 ASN B 185 REMARK 465 LEU B 186 REMARK 465 TYR B 187 REMARK 465 PHE B 188 REMARK 465 GLN B 189 REMARK 465 GLY B 190 REMARK 465 SER B 191 REMARK 465 GLU B 192 REMARK 465 ARG B 193 REMARK 465 GLU B 194 REMARK 465 ALA B 195 REMARK 465 ASP B 266 REMARK 465 SER B 267 REMARK 465 ARG B 268 REMARK 465 ASN B 269 REMARK 465 ASP B 270 REMARK 465 GLU B 271 REMARK 465 VAL B 272 REMARK 465 ALA B 340 REMARK 465 GLU B 341 REMARK 465 GLU B 342 REMARK 465 VAL B 343 REMARK 465 ASP B 344 REMARK 465 THR B 345 REMARK 465 PHE B 508 REMARK 465 ALA B 509 REMARK 465 ASP B 510 REMARK 465 ALA B 511 REMARK 465 PRO B 512 REMARK 465 ASN B 513 REMARK 465 HIS B 514 REMARK 465 TYR B 515 REMARK 465 LYS B 516 REMARK 465 LYS B 517 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 199 CG OD1 OD2 REMARK 470 LYS A 202 CE NZ REMARK 470 GLU A 213 CD OE1 OE2 REMARK 470 ARG A 217 CD NE CZ NH1 NH2 REMARK 470 GLU A 256 CD OE1 OE2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 LYS A 297 CD CE NZ REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 THR A 345 OG1 CG2 REMARK 470 ARG A 398 NE CZ NH1 NH2 REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 LYS A 466 CD CE NZ REMARK 470 GLU A 470 CG CD OE1 OE2 REMARK 470 ASP A 491 CG OD1 OD2 REMARK 470 GLU A 492 CG CD OE1 OE2 REMARK 470 LEU A 496 CD1 CD2 REMARK 470 PHE A 508 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 200 CE NZ REMARK 470 ASN B 209 CG OD1 ND2 REMARK 470 GLU B 213 CD OE1 OE2 REMARK 470 GLU B 214 CD OE1 OE2 REMARK 470 ARG B 217 CD NE CZ NH1 NH2 REMARK 470 ASP B 244 CG OD1 OD2 REMARK 470 ARG B 245 NE CZ NH1 NH2 REMARK 470 LYS B 255 CE NZ REMARK 470 GLN B 274 CG CD OE1 NE2 REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 LEU B 294 CG CD1 CD2 REMARK 470 LYS B 297 CD CE NZ REMARK 470 GLU B 300 CD OE1 OE2 REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 ASP B 376 OD1 OD2 REMARK 470 GLN B 386 CG CD OE1 NE2 REMARK 470 ARG B 398 NE CZ NH1 NH2 REMARK 470 GLU B 401 CG CD OE1 OE2 REMARK 470 GLU B 411 CD OE1 OE2 REMARK 470 HIS B 451 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 454 CG CD1 CD2 REMARK 470 LYS B 466 CD CE NZ REMARK 470 GLU B 471 CD OE1 OE2 REMARK 470 LYS B 472 CE NZ REMARK 470 ASP B 473 CG OD1 OD2 REMARK 470 PHE B 474 CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 475 CD OE1 NE2 REMARK 470 LEU B 496 CD1 CD2 REMARK 470 GLU B 500 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 320 UNK UNX B 1011 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 286 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 400 76.66 -156.49 REMARK 500 ASN A 483 53.50 -143.87 REMARK 500 HIS B 263 -72.96 -65.80 REMARK 500 ASN B 483 56.56 -150.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1012 DBREF 2QFZ A 191 517 UNP Q8WUA7 TB22A_HUMAN 191 517 DBREF 2QFZ B 191 517 UNP Q8WUA7 TB22A_HUMAN 191 517 SEQADV 2QFZ MET A 173 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 174 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 175 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 176 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 177 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 178 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 179 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ SER A 180 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ SER A 181 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLY A 182 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ ARG A 183 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLU A 184 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ ASN A 185 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ LEU A 186 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ TYR A 187 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ PHE A 188 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLN A 189 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLY A 190 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ MET B 173 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 174 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 175 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 176 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 177 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 178 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 179 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ SER B 180 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ SER B 181 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLY B 182 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ ARG B 183 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLU B 184 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ ASN B 185 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ LEU B 186 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ TYR B 187 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ PHE B 188 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLN B 189 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLY B 190 UNP Q8WUA7 CLONING ARTIFACT SEQRES 1 A 345 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 345 LEU TYR PHE GLN GLY SER GLU ARG GLU ALA SER ARG LEU SEQRES 3 A 345 ASP LYS PHE LYS GLN LEU LEU ALA GLY PRO ASN THR ASP SEQRES 4 A 345 LEU GLU GLU LEU ARG ARG LEU SER TRP SER GLY ILE PRO SEQRES 5 A 345 LYS PRO VAL ARG PRO MET THR TRP LYS LEU LEU SER GLY SEQRES 6 A 345 TYR LEU PRO ALA ASN VAL ASP ARG ARG PRO ALA THR LEU SEQRES 7 A 345 GLN ARG LYS GLN LYS GLU TYR PHE ALA PHE ILE GLU HIS SEQRES 8 A 345 TYR TYR ASP SER ARG ASN ASP GLU VAL HIS GLN ASP THR SEQRES 9 A 345 TYR ARG GLN ILE HIS ILE ASP ILE PRO ARG MET SER PRO SEQRES 10 A 345 GLU ALA LEU ILE LEU GLN PRO LYS VAL THR GLU ILE PHE SEQRES 11 A 345 GLU ARG ILE LEU PHE ILE TRP ALA ILE ARG HIS PRO ALA SEQRES 12 A 345 SER GLY TYR VAL GLN GLY ILE ASN ASP LEU VAL THR PRO SEQRES 13 A 345 PHE PHE VAL VAL PHE ILE CYS GLU TYR ILE GLU ALA GLU SEQRES 14 A 345 GLU VAL ASP THR VAL ASP VAL SER GLY VAL PRO ALA GLU SEQRES 15 A 345 VAL LEU CYS ASN ILE GLU ALA ASP THR TYR TRP CYS MET SEQRES 16 A 345 SER LYS LEU LEU ASP GLY ILE GLN ASP ASN TYR THR PHE SEQRES 17 A 345 ALA GLN PRO GLY ILE GLN MET LYS VAL LYS MET LEU GLU SEQRES 18 A 345 GLU LEU VAL SER ARG ILE ASP GLU GLN VAL HIS ARG HIS SEQRES 19 A 345 LEU ASP GLN HIS GLU VAL ARG TYR LEU GLN PHE ALA PHE SEQRES 20 A 345 ARG TRP MET ASN ASN LEU LEU MET ARG GLU VAL PRO LEU SEQRES 21 A 345 ARG CYS THR ILE ARG LEU TRP ASP THR TYR GLN SER GLU SEQRES 22 A 345 PRO ASP GLY PHE SER HIS PHE HIS LEU TYR VAL CYS ALA SEQRES 23 A 345 ALA PHE LEU VAL ARG TRP ARG LYS GLU ILE LEU GLU GLU SEQRES 24 A 345 LYS ASP PHE GLN GLU LEU LEU LEU PHE LEU GLN ASN LEU SEQRES 25 A 345 PRO THR ALA HIS TRP ASP ASP GLU ASP ILE SER LEU LEU SEQRES 26 A 345 LEU ALA GLU ALA TYR ARG LEU LYS PHE ALA PHE ALA ASP SEQRES 27 A 345 ALA PRO ASN HIS TYR LYS LYS SEQRES 1 B 345 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 345 LEU TYR PHE GLN GLY SER GLU ARG GLU ALA SER ARG LEU SEQRES 3 B 345 ASP LYS PHE LYS GLN LEU LEU ALA GLY PRO ASN THR ASP SEQRES 4 B 345 LEU GLU GLU LEU ARG ARG LEU SER TRP SER GLY ILE PRO SEQRES 5 B 345 LYS PRO VAL ARG PRO MET THR TRP LYS LEU LEU SER GLY SEQRES 6 B 345 TYR LEU PRO ALA ASN VAL ASP ARG ARG PRO ALA THR LEU SEQRES 7 B 345 GLN ARG LYS GLN LYS GLU TYR PHE ALA PHE ILE GLU HIS SEQRES 8 B 345 TYR TYR ASP SER ARG ASN ASP GLU VAL HIS GLN ASP THR SEQRES 9 B 345 TYR ARG GLN ILE HIS ILE ASP ILE PRO ARG MET SER PRO SEQRES 10 B 345 GLU ALA LEU ILE LEU GLN PRO LYS VAL THR GLU ILE PHE SEQRES 11 B 345 GLU ARG ILE LEU PHE ILE TRP ALA ILE ARG HIS PRO ALA SEQRES 12 B 345 SER GLY TYR VAL GLN GLY ILE ASN ASP LEU VAL THR PRO SEQRES 13 B 345 PHE PHE VAL VAL PHE ILE CYS GLU TYR ILE GLU ALA GLU SEQRES 14 B 345 GLU VAL ASP THR VAL ASP VAL SER GLY VAL PRO ALA GLU SEQRES 15 B 345 VAL LEU CYS ASN ILE GLU ALA ASP THR TYR TRP CYS MET SEQRES 16 B 345 SER LYS LEU LEU ASP GLY ILE GLN ASP ASN TYR THR PHE SEQRES 17 B 345 ALA GLN PRO GLY ILE GLN MET LYS VAL LYS MET LEU GLU SEQRES 18 B 345 GLU LEU VAL SER ARG ILE ASP GLU GLN VAL HIS ARG HIS SEQRES 19 B 345 LEU ASP GLN HIS GLU VAL ARG TYR LEU GLN PHE ALA PHE SEQRES 20 B 345 ARG TRP MET ASN ASN LEU LEU MET ARG GLU VAL PRO LEU SEQRES 21 B 345 ARG CYS THR ILE ARG LEU TRP ASP THR TYR GLN SER GLU SEQRES 22 B 345 PRO ASP GLY PHE SER HIS PHE HIS LEU TYR VAL CYS ALA SEQRES 23 B 345 ALA PHE LEU VAL ARG TRP ARG LYS GLU ILE LEU GLU GLU SEQRES 24 B 345 LYS ASP PHE GLN GLU LEU LEU LEU PHE LEU GLN ASN LEU SEQRES 25 B 345 PRO THR ALA HIS TRP ASP ASP GLU ASP ILE SER LEU LEU SEQRES 26 B 345 LEU ALA GLU ALA TYR ARG LEU LYS PHE ALA PHE ALA ASP SEQRES 27 B 345 ALA PRO ASN HIS TYR LYS LYS HET UNX A1001 1 HET UNX A1004 1 HET UNX A1006 1 HET UNX A1007 1 HET UNX A1008 1 HET UNX A1009 1 HET UNX A1012 1 HET UNX B1002 1 HET UNX B1003 1 HET UNX B1005 1 HET UNX B1010 1 HET UNX B1011 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 UNX 12(X) FORMUL 15 HOH *80(H2 O) HELIX 1 1 SER A 196 GLY A 207 1 12 HELIX 2 2 ASP A 211 TRP A 220 1 10 HELIX 3 3 PRO A 224 PRO A 226 5 3 HELIX 4 4 VAL A 227 SER A 236 1 10 HELIX 5 5 ASN A 242 ASP A 244 5 3 HELIX 6 6 ARG A 245 TYR A 264 1 20 HELIX 7 7 HIS A 273 ILE A 284 1 12 HELIX 8 8 PRO A 285 MET A 287 5 3 HELIX 9 9 PRO A 289 LEU A 294 1 6 HELIX 10 10 GLN A 295 HIS A 313 1 19 HELIX 11 11 GLY A 321 CYS A 335 1 15 HELIX 12 12 GLU A 336 ILE A 338 5 3 HELIX 13 13 PRO A 352 GLY A 373 1 22 HELIX 14 14 ILE A 374 TYR A 378 5 5 HELIX 15 15 GLN A 382 ASP A 400 1 19 HELIX 16 16 ASP A 400 HIS A 410 1 11 HELIX 17 17 ARG A 413 ASN A 424 1 12 HELIX 18 18 PRO A 431 GLN A 443 1 13 HELIX 19 19 HIS A 451 TRP A 464 1 14 HELIX 20 20 TRP A 464 GLU A 471 1 8 HELIX 21 21 ASP A 473 GLN A 482 1 10 HELIX 22 22 ASP A 490 PHE A 508 1 19 HELIX 23 23 SER B 196 ALA B 206 1 11 HELIX 24 24 ASP B 211 TRP B 220 1 10 HELIX 25 25 PRO B 224 PRO B 226 5 3 HELIX 26 26 VAL B 227 SER B 236 1 10 HELIX 27 27 ASN B 242 ASP B 244 5 3 HELIX 28 28 ARG B 245 TYR B 265 1 21 HELIX 29 29 HIS B 273 ILE B 284 1 12 HELIX 30 30 PRO B 285 MET B 287 5 3 HELIX 31 31 PRO B 289 LEU B 294 1 6 HELIX 32 32 GLN B 295 HIS B 313 1 19 HELIX 33 33 GLY B 321 GLU B 336 1 16 HELIX 34 34 PRO B 352 ILE B 374 1 23 HELIX 35 35 GLN B 375 TYR B 378 5 4 HELIX 36 36 GLN B 382 ASP B 400 1 19 HELIX 37 37 ASP B 400 HIS B 410 1 11 HELIX 38 38 ARG B 413 ASN B 424 1 12 HELIX 39 39 PRO B 431 GLU B 445 1 15 HELIX 40 40 HIS B 451 TRP B 464 1 14 HELIX 41 41 TRP B 464 GLU B 471 1 8 HELIX 42 42 ASP B 473 GLN B 482 1 10 HELIX 43 43 ASP B 490 ALA B 507 1 18 CISPEP 1 GLY A 207 PRO A 208 0 9.33 CISPEP 2 SER A 288 PRO A 289 0 -5.11 CISPEP 3 GLY B 207 PRO B 208 0 13.68 CISPEP 4 SER B 288 PRO B 289 0 1.70 SITE 1 AC1 3 GLN A 375 GLU A 471 GLU A 476 SITE 1 AC2 6 ARG B 420 ASN B 424 LEU B 426 MET B 427 SITE 2 AC2 6 ARG B 428 GLU B 429 SITE 1 AC3 4 GLN B 416 PHE B 417 PHE B 419 ARG B 420 SITE 1 AC4 7 ARG A 420 TRP A 421 ASN A 424 LEU A 426 SITE 2 AC4 7 MET A 427 ARG A 428 GLU A 429 SITE 1 AC5 4 PHE B 449 SER B 450 HOH B2028 HOH B2046 SITE 1 AC6 3 PHE A 417 ARG A 420 TRP A 421 SITE 1 AC7 3 PHE A 449 SER A 450 HOH A2041 SITE 1 AC8 3 ASP A 493 LEU A 496 LEU A 497 SITE 1 AC9 2 ARG A 217 SER A 221 SITE 1 BC1 1 ARG B 433 SITE 1 BC2 6 ASP A 408 HOH A2066 ASP B 283 GLN B 320 SITE 2 BC2 6 HOH B2052 HOH B2069 SITE 1 BC3 3 ASP A 283 GLN A 320 ASP B 408 CRYST1 42.911 121.515 66.278 90.00 93.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023300 0.000000 0.001480 0.00000 SCALE2 0.000000 0.008230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015120 0.00000