HEADER HYDROLASE 29-JUN-07 2QGP OBSLTE 10-OCT-12 2QGP 4H9D TITLE X-RAY STRUCTURE OF THE NHN ENDONUCLEASE FROM GEOBACTER TITLE 2 METALLIREDUCENS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 GMR87. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HNH ENDONUCLEASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER METALLIREDUCENS GS-15; SOURCE 3 ORGANISM_TAXID: 269799; SOURCE 4 STRAIN: GS-15, DSM 7210; SOURCE 5 ATCC: 53774; SOURCE 6 GENE: GMET_0936; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS Q39X46, GMR87, NESG, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.P.KUZIN,Y.CHEN,J.SEETHARAMAN,C.X.CHEN,Y.FANG,L.OWENS,L-C.MA,R.XIAO, AUTHOR 2 J.LIU,M.C.BARAN,T.B.ACTON,B.ROST,G.T.MONTELIONE,J.F.HUNT,L.TONG, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 10-OCT-12 2QGP 1 OBSLTE VERSN REVDAT 2 24-FEB-09 2QGP 1 VERSN REVDAT 1 24-JUL-07 2QGP 0 JRNL AUTH A.P.KUZIN,Y.CHEN,S.JAYARAMAN,C.X.CHEN,Y.FANG,L.OWENS,L-C.MA, JRNL AUTH 2 R.XIAO,J.LIU,M.C.BARAN,T.B.ACTON,B.ROST,G.T.MONTELIONE, JRNL AUTH 3 J.F.HUNT,L.TONG JRNL TITL X-RAY STRUCTURE OF THE NHN ENDONUCLEASE FROM GEOBACTER JRNL TITL 2 METALLIREDUCENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 159702.210 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 19157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 949 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2354 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 126 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2245 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 22.47700 REMARK 3 B22 (A**2) : -40.77300 REMARK 3 B33 (A**2) : 18.29700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.60 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.73 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.92 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 49.43 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED FOR PHASING REMARK 4 REMARK 4 2QGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96417, 0.97935, 0.97913 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 27.300 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SNB REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGSO4, 20% PEG 8000, 0.1 M TRIS- REMARK 280 HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.33700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.69250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 112.55800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.33700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.69250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 112.55800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.33700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.69250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.55800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.33700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.69250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 112.55800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 TYR A 3 REMARK 465 PHE A 4 REMARK 465 ILE A 5 REMARK 465 VAL A 6 REMARK 465 GLU A 7 REMARK 465 VAL A 8 REMARK 465 SER A 9 REMARK 465 GLU A 10 REMARK 465 GLN A 11 REMARK 465 GLU A 12 REMARK 465 GLU A 96 REMARK 465 SER A 97 REMARK 465 GLU A 98 REMARK 465 LYS A 99 REMARK 465 GLU A 100 REMARK 465 LYS A 101 REMARK 465 ALA A 102 REMARK 465 ARG A 103 REMARK 465 GLY A 104 REMARK 465 LEU A 105 REMARK 465 GLU A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 LYS B 99 REMARK 465 GLU B 100 REMARK 465 LYS B 101 REMARK 465 ALA B 102 REMARK 465 ARG B 103 REMARK 465 GLY B 104 REMARK 465 LEU B 105 REMARK 465 GLU B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 MSE C 1 REMARK 465 ASN C 2 REMARK 465 TYR C 3 REMARK 465 PHE C 4 REMARK 465 ILE C 5 REMARK 465 LEU C 95 REMARK 465 GLU C 96 REMARK 465 SER C 97 REMARK 465 GLU C 98 REMARK 465 LYS C 99 REMARK 465 GLU C 100 REMARK 465 LYS C 101 REMARK 465 ALA C 102 REMARK 465 ARG C 103 REMARK 465 GLY C 104 REMARK 465 LEU C 105 REMARK 465 GLU C 106 REMARK 465 HIS C 107 REMARK 465 HIS C 108 REMARK 465 HIS C 109 REMARK 465 HIS C 110 REMARK 465 HIS C 111 REMARK 465 HIS C 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS C 17 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 14 -76.77 -19.68 REMARK 500 TYR A 82 44.78 -148.10 REMARK 500 PRO A 85 47.35 -100.10 REMARK 500 ASP A 93 -72.61 -62.70 REMARK 500 ASN B 2 -34.21 -138.66 REMARK 500 ARG B 25 59.25 -92.22 REMARK 500 PRO B 47 -8.94 -46.42 REMARK 500 PRO B 85 -39.17 -38.22 REMARK 500 ASP B 93 12.57 -57.74 REMARK 500 SER B 97 27.58 48.89 REMARK 500 SER C 9 -139.05 -57.25 REMARK 500 GLU C 16 12.94 57.86 REMARK 500 GLU C 49 21.55 -73.16 REMARK 500 ARG C 60 22.67 -74.27 REMARK 500 ASN C 68 -14.47 -148.12 REMARK 500 GLU C 75 -90.77 -51.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 113 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 CYS A 41 SG 114.3 REMARK 620 3 CYS A 73 SG 95.9 123.2 REMARK 620 4 CYS A 76 SG 108.0 103.2 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 113 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 38 SG REMARK 620 2 CYS B 41 SG 97.0 REMARK 620 3 CYS B 73 SG 113.9 124.1 REMARK 620 4 CYS B 76 SG 110.0 103.3 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 113 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 38 SG REMARK 620 2 CYS C 41 SG 104.1 REMARK 620 3 CYS C 73 SG 103.1 122.0 REMARK 620 4 CYS C 76 SG 113.7 111.7 102.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 113 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GMR87 RELATED DB: TARGETDB DBREF 2QGP A 1 98 UNP Q39X46 Q39X46_GEOMG 1 98 DBREF 2QGP B 1 98 UNP Q39X46 Q39X46_GEOMG 1 98 DBREF 2QGP C 1 98 UNP Q39X46 Q39X46_GEOMG 1 98 SEQADV 2QGP MSE A 1 UNP Q39X46 MET 1 MODIFIED RESIDUE SEQADV 2QGP MSE A 52 UNP Q39X46 MET 52 MODIFIED RESIDUE SEQADV 2QGP LYS A 99 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP GLU A 100 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP LYS A 101 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP ALA A 102 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP ARG A 103 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP GLY A 104 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP LEU A 105 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP GLU A 106 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS A 107 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS A 108 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS A 109 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS A 110 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS A 111 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS A 112 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP MSE B 1 UNP Q39X46 MET 1 MODIFIED RESIDUE SEQADV 2QGP MSE B 52 UNP Q39X46 MET 52 MODIFIED RESIDUE SEQADV 2QGP LYS B 99 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP GLU B 100 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP LYS B 101 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP ALA B 102 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP ARG B 103 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP GLY B 104 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP LEU B 105 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP GLU B 106 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS B 107 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS B 108 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS B 109 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS B 110 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS B 111 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS B 112 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP MSE C 1 UNP Q39X46 MET 1 MODIFIED RESIDUE SEQADV 2QGP MSE C 52 UNP Q39X46 MET 52 MODIFIED RESIDUE SEQADV 2QGP LYS C 99 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP GLU C 100 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP LYS C 101 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP ALA C 102 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP ARG C 103 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP GLY C 104 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP LEU C 105 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP GLU C 106 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS C 107 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS C 108 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS C 109 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS C 110 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS C 111 UNP Q39X46 EXPRESSION TAG SEQADV 2QGP HIS C 112 UNP Q39X46 EXPRESSION TAG SEQRES 1 A 112 MSE ASN TYR PHE ILE VAL GLU VAL SER GLU GLN GLU VAL SEQRES 2 A 112 LYS ARG GLU LYS GLU LYS ALA ARG GLU LEU ARG ARG SER SEQRES 3 A 112 GLN TRP TRP LYS ASN ARG ILE ALA ARG GLY ILE CYS HIS SEQRES 4 A 112 TYR CYS GLY GLU ILE PHE PRO PRO GLU GLU LEU THR MSE SEQRES 5 A 112 ASP HIS LEU VAL PRO VAL VAL ARG GLY GLY LYS SER THR SEQRES 6 A 112 ARG GLY ASN VAL VAL PRO ALA CYS LYS GLU CYS ASN ASN SEQRES 7 A 112 ARG LYS LYS TYR LEU LEU PRO VAL GLU TRP GLU GLU TYR SEQRES 8 A 112 LEU ASP SER LEU GLU SER GLU LYS GLU LYS ALA ARG GLY SEQRES 9 A 112 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 112 MSE ASN TYR PHE ILE VAL GLU VAL SER GLU GLN GLU VAL SEQRES 2 B 112 LYS ARG GLU LYS GLU LYS ALA ARG GLU LEU ARG ARG SER SEQRES 3 B 112 GLN TRP TRP LYS ASN ARG ILE ALA ARG GLY ILE CYS HIS SEQRES 4 B 112 TYR CYS GLY GLU ILE PHE PRO PRO GLU GLU LEU THR MSE SEQRES 5 B 112 ASP HIS LEU VAL PRO VAL VAL ARG GLY GLY LYS SER THR SEQRES 6 B 112 ARG GLY ASN VAL VAL PRO ALA CYS LYS GLU CYS ASN ASN SEQRES 7 B 112 ARG LYS LYS TYR LEU LEU PRO VAL GLU TRP GLU GLU TYR SEQRES 8 B 112 LEU ASP SER LEU GLU SER GLU LYS GLU LYS ALA ARG GLY SEQRES 9 B 112 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 112 MSE ASN TYR PHE ILE VAL GLU VAL SER GLU GLN GLU VAL SEQRES 2 C 112 LYS ARG GLU LYS GLU LYS ALA ARG GLU LEU ARG ARG SER SEQRES 3 C 112 GLN TRP TRP LYS ASN ARG ILE ALA ARG GLY ILE CYS HIS SEQRES 4 C 112 TYR CYS GLY GLU ILE PHE PRO PRO GLU GLU LEU THR MSE SEQRES 5 C 112 ASP HIS LEU VAL PRO VAL VAL ARG GLY GLY LYS SER THR SEQRES 6 C 112 ARG GLY ASN VAL VAL PRO ALA CYS LYS GLU CYS ASN ASN SEQRES 7 C 112 ARG LYS LYS TYR LEU LEU PRO VAL GLU TRP GLU GLU TYR SEQRES 8 C 112 LEU ASP SER LEU GLU SER GLU LYS GLU LYS ALA ARG GLY SEQRES 9 C 112 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 2QGP MSE A 52 MET SELENOMETHIONINE MODRES 2QGP MSE B 1 MET SELENOMETHIONINE MODRES 2QGP MSE B 52 MET SELENOMETHIONINE MODRES 2QGP MSE C 52 MET SELENOMETHIONINE HET MSE A 52 8 HET MSE B 1 8 HET MSE B 52 8 HET MSE C 52 8 HET ZN A 113 1 HET ZN B 113 1 HET ZN C 113 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *15(H2 O) HELIX 1 1 ARG A 15 GLU A 18 5 4 HELIX 2 2 LYS A 19 ARG A 24 1 6 HELIX 3 3 SER A 26 GLY A 36 1 11 HELIX 4 4 PRO A 46 GLU A 48 5 3 HELIX 5 5 LYS A 74 TYR A 82 1 9 HELIX 6 6 PRO A 85 SER A 94 1 10 HELIX 7 7 SER B 9 ARG B 25 1 17 HELIX 8 8 SER B 26 GLY B 36 1 11 HELIX 9 9 PRO B 57 GLY B 61 5 5 HELIX 10 10 LYS B 74 LEU B 83 1 10 HELIX 11 11 LEU B 84 ASP B 93 1 10 HELIX 12 12 GLU C 10 ARG C 15 1 6 HELIX 13 13 SER C 26 GLY C 36 1 11 HELIX 14 14 PRO C 46 GLU C 48 5 3 HELIX 15 15 LYS C 74 LEU C 83 1 10 HELIX 16 16 GLU C 87 LEU C 92 1 6 SHEET 1 A 2 LEU A 50 HIS A 54 0 SHEET 2 A 2 VAL A 69 CYS A 73 -1 O ALA A 72 N THR A 51 SHEET 1 B 2 LEU B 50 HIS B 54 0 SHEET 2 B 2 VAL B 69 CYS B 73 -1 O ALA B 72 N THR B 51 SHEET 1 C 2 LEU C 50 HIS C 54 0 SHEET 2 C 2 VAL C 69 CYS C 73 -1 O ALA C 72 N THR C 51 LINK SG CYS A 38 ZN ZN A 113 1555 1555 2.54 LINK SG CYS A 41 ZN ZN A 113 1555 1555 2.45 LINK SG CYS A 73 ZN ZN A 113 1555 1555 2.45 LINK SG CYS A 76 ZN ZN A 113 1555 1555 2.56 LINK SG CYS B 38 ZN ZN B 113 1555 1555 2.35 LINK SG CYS B 41 ZN ZN B 113 1555 1555 2.24 LINK SG CYS B 73 ZN ZN B 113 1555 1555 2.52 LINK SG CYS B 76 ZN ZN B 113 1555 1555 2.47 LINK SG CYS C 38 ZN ZN C 113 1555 1555 2.36 LINK SG CYS C 41 ZN ZN C 113 1555 1555 2.50 LINK SG CYS C 73 ZN ZN C 113 1555 1555 2.42 LINK SG CYS C 76 ZN ZN C 113 1555 1555 2.54 LINK C THR A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N ASP A 53 1555 1555 1.33 LINK C MSE B 1 N ASN B 2 1555 1555 1.34 LINK C THR B 51 N MSE B 52 1555 1555 1.32 LINK C MSE B 52 N ASP B 53 1555 1555 1.32 LINK C THR C 51 N MSE C 52 1555 1555 1.33 LINK C MSE C 52 N ASP C 53 1555 1555 1.32 CISPEP 1 LEU A 84 PRO A 85 0 0.07 SITE 1 AC1 4 CYS A 38 CYS A 41 CYS A 73 CYS A 76 SITE 1 AC2 4 CYS B 38 CYS B 41 CYS B 73 CYS B 76 SITE 1 AC3 4 CYS C 38 CYS C 41 CYS C 73 CYS C 76 CRYST1 40.674 83.385 225.116 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024586 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004442 0.00000