HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-JUL-07 2QH8 OBSLTE 02-MAR-10 2QH8 3LKV TITLE CRYSTAL STRUCTURE OF CONSERVED DOMAIN PROTEIN FROM VIBRIO TITLE 2 CHOLERAE O1 BIOVAR ELTOR STR. N16961 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 23-321; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. SOURCE 3 N16961; SOURCE 4 ORGANISM_TAXID: 243277; SOURCE 5 STRAIN: EL TOR INABA N16961; SOURCE 6 ATCC: 39315; SOURCE 7 GENE: VC_1101; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CONSERVED DOMAIN PROTEIN, STRUCTURAL GENOMICS, PSI-2, MCSG, KEYWDS 2 BIG_563.1, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,E.DUGGAN,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 02-MAR-10 2QH8 1 OBSLTE REVDAT 2 24-FEB-09 2QH8 1 VERSN REVDAT 1 24-JUL-07 2QH8 0 JRNL AUTH B.NOCEK,E.DUGGAN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF CONSERVED DOMAIN PROTEIN FROM JRNL TITL 2 VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 23804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1268 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2173 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.718 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2217 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3017 ; 1.453 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 5.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;39.968 ;26.835 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 379 ;14.481 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;18.490 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1611 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1055 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1573 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 110 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.123 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.253 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.035 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1516 ; 0.830 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2374 ; 1.416 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 781 ; 2.731 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 643 ; 4.382 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 72.5221 83.9767 26.1932 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0835 REMARK 3 T33: 0.0620 T12: -0.0055 REMARK 3 T13: -0.0269 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.4534 L22: 3.2605 REMARK 3 L33: 1.1722 L12: 0.0880 REMARK 3 L13: 0.1848 L23: 0.3514 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.0124 S13: 0.0603 REMARK 3 S21: 0.1412 S22: 0.0669 S23: 0.0205 REMARK 3 S31: -0.0127 S32: -0.0331 S33: -0.0753 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 87.1547 69.6369 25.3001 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.0674 REMARK 3 T33: 0.1283 T12: 0.0016 REMARK 3 T13: -0.0341 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 1.3892 L22: 2.2321 REMARK 3 L33: 1.2365 L12: -1.2256 REMARK 3 L13: 1.0524 L23: -1.2973 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.0205 S13: 0.0911 REMARK 3 S21: -0.0302 S22: -0.0641 S23: -0.2822 REMARK 3 S31: 0.0802 S32: 0.0811 S33: 0.0595 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 266 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 101.2694 72.3332 35.9922 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.2506 REMARK 3 T33: 0.2432 T12: 0.0570 REMARK 3 T13: -0.0704 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 0.1222 L22: 1.1102 REMARK 3 L33: 3.6288 L12: -0.1541 REMARK 3 L13: 0.6360 L23: -1.3429 REMARK 3 S TENSOR REMARK 3 S11: 0.0813 S12: 0.4050 S13: 0.3809 REMARK 3 S21: 0.0328 S22: -0.5274 S23: -0.5437 REMARK 3 S31: 0.5248 S32: 0.9906 S33: 0.4462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2QH8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97970, 0.97950, 1.28000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26598 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 31.100 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 61.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 30.60 REMARK 200 R MERGE FOR SHELL (I) : 0.51300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, SHELXE, MLPHARE, DM, SOLVE/ REMARK 200 RESOLVE, ARP/WARP, CCP4, O, COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M ZINC SULFATE, 0.1M BIS-TRIS REMARK 280 PH 6.5, 25% PEG 550 MME, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 72.12800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.12800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.12800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.12800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.12800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.12800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 72.12800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 72.12800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 72.12800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 72.12800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 72.12800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 72.12800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 72.12800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 72.12800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 72.12800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 72.12800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 72.12800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 72.12800 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 108.19200 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 36.06400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.06400 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 108.19200 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 108.19200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 108.19200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 36.06400 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 36.06400 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 108.19200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 36.06400 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 108.19200 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 36.06400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 108.19200 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 36.06400 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 36.06400 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 36.06400 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 108.19200 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 36.06400 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 108.19200 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 108.19200 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 108.19200 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 36.06400 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 36.06400 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 108.19200 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 108.19200 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 36.06400 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 36.06400 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 36.06400 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 36.06400 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 108.19200 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 36.06400 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 108.19200 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 36.06400 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 108.19200 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 108.19200 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 108.19200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 20 REMARK 465 ASN A 21 REMARK 465 ALA A 22 REMARK 465 ILE A 23 REMARK 465 MET A 24 REMARK 465 ALA A 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 61 -79.88 -119.71 REMARK 500 ASN A 88 63.26 38.79 REMARK 500 ALA A 96 157.29 87.93 REMARK 500 THR A 109 -37.14 -133.46 REMARK 500 LYS A 134 -142.16 -119.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 AUTHORS STATE THAT THE UNEXPECTED DENSITY OBSERVED REMARK 600 IN THE STRUCTURE APPEARS TO RESEMBLE A HISTIDINE-LIKE REMARK 600 LIGAND SHAPE. DUE TO LACK OF FURTHER BIOLOGICAL DATA REMARK 600 CONFIRMING THE IDENTITY OF THE LIGAND IT HAS BEEN REMARK 600 MODELED AS L-HISTIDINE RESIDUE. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 64 OE2 REMARK 620 2 ASP A 66 OD1 120.9 REMARK 620 3 ASP A 66 OD2 81.7 54.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 130 OE2 REMARK 620 2 ASP A 286 OD2 124.2 REMARK 620 3 GLU A 130 OE1 52.3 76.7 REMARK 620 4 GLU A 211 OE1 85.9 129.8 136.1 REMARK 620 5 ALA A 238 O 108.2 96.6 95.5 111.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 210 O REMARK 620 2 SER A 213 O 92.9 REMARK 620 3 THR A 240 OG1 78.9 129.7 REMARK 620 4 HOH A 669 O 164.5 95.4 85.7 REMARK 620 5 HOH A 718 O 106.1 101.3 128.8 85.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC87022.1 RELATED DB: TARGETDB DBREF 2QH8 A 23 321 UNP Q9KT04 Q9KT04_VIBCH 23 321 SEQADV 2QH8 SER A 20 UNP Q9KT04 CLONING ARTIFACT SEQADV 2QH8 ASN A 21 UNP Q9KT04 CLONING ARTIFACT SEQADV 2QH8 ALA A 22 UNP Q9KT04 CLONING ARTIFACT SEQADV 2QH8 MSE A 177 UNP Q9KT04 MET 177 MODIFIED RESIDUE SEQADV 2QH8 MSE A 231 UNP Q9KT04 MET 231 MODIFIED RESIDUE SEQRES 1 A 302 SER ASN ALA ILE MET ALA LYS THR ALA LYS VAL ALA VAL SEQRES 2 A 302 SER GLN ILE VAL GLU HIS PRO ALA LEU ASP ALA THR ARG SEQRES 3 A 302 GLN GLY LEU LEU ASP GLY LEU LYS ALA LYS GLY TYR GLU SEQRES 4 A 302 GLU GLY LYS ASN LEU GLU PHE ASP TYR LYS THR ALA GLN SEQRES 5 A 302 GLY ASN PRO ALA ILE ALA VAL GLN ILE ALA ARG GLN PHE SEQRES 6 A 302 VAL GLY GLU ASN PRO ASP VAL LEU VAL GLY ILE ALA THR SEQRES 7 A 302 PRO THR ALA GLN ALA LEU VAL SER ALA THR LYS THR ILE SEQRES 8 A 302 PRO ILE VAL PHE THR ALA VAL THR ASP PRO VAL GLY ALA SEQRES 9 A 302 LYS LEU VAL LYS GLN LEU GLU GLN PRO GLY LYS ASN VAL SEQRES 10 A 302 THR GLY LEU SER ASP LEU SER PRO VAL GLU GLN HIS VAL SEQRES 11 A 302 GLU LEU ILE LYS GLU ILE LEU PRO ASN VAL LYS SER ILE SEQRES 12 A 302 GLY VAL VAL TYR ASN PRO GLY GLU ALA ASN ALA VAL SER SEQRES 13 A 302 LEU MSE GLU LEU LEU LYS LEU SER ALA ALA LYS HIS GLY SEQRES 14 A 302 ILE LYS LEU VAL GLU ALA THR ALA LEU LYS SER ALA ASP SEQRES 15 A 302 VAL GLN SER ALA THR GLN ALA ILE ALA GLU LYS SER ASP SEQRES 16 A 302 VAL ILE TYR ALA LEU ILE ASP ASN THR VAL ALA SER ALA SEQRES 17 A 302 ILE GLU GLY MSE ILE VAL ALA ALA ASN GLN ALA LYS THR SEQRES 18 A 302 PRO VAL PHE GLY ALA ALA THR SER TYR VAL GLU ARG GLY SEQRES 19 A 302 ALA ILE ALA SER LEU GLY PHE ASP TYR TYR GLN ILE GLY SEQRES 20 A 302 VAL GLN THR ALA ASP TYR VAL ALA ALA ILE LEU GLU GLY SEQRES 21 A 302 LYS GLU PRO GLY SER LEU ASP VAL GLN VAL ALA LYS GLY SEQRES 22 A 302 SER ASP LEU VAL ILE ASN LYS THR ALA ALA GLU GLN LEU SEQRES 23 A 302 GLY ILE THR ILE PRO GLU ALA VAL LEU ALA ARG ALA THR SEQRES 24 A 302 SER THR LYS MODRES 2QH8 MSE A 177 MET SELENOMETHIONINE MODRES 2QH8 MSE A 231 MET SELENOMETHIONINE HET MSE A 177 8 HET MSE A 231 8 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET SO4 A 501 5 HET HIS A 601 11 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM HIS HISTIDINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 ZN 3(ZN 2+) FORMUL 5 SO4 O4 S 2- FORMUL 6 HIS C6 H10 N3 O2 1+ FORMUL 7 HOH *117(H2 O) HELIX 1 1 HIS A 38 LYS A 55 1 18 HELIX 2 2 ASN A 73 GLU A 87 1 15 HELIX 3 3 ALA A 96 THR A 107 1 12 HELIX 4 4 PRO A 144 LEU A 156 1 13 HELIX 5 5 GLU A 170 HIS A 187 1 18 HELIX 6 6 LYS A 198 ALA A 200 5 3 HELIX 7 7 ASP A 201 ALA A 210 1 10 HELIX 8 8 GLU A 211 SER A 213 5 3 HELIX 9 9 ASP A 221 SER A 226 1 6 HELIX 10 10 ALA A 227 ALA A 238 1 12 HELIX 11 11 ALA A 246 ARG A 252 1 7 HELIX 12 12 ASP A 261 GLU A 278 1 18 HELIX 13 13 GLU A 281 LEU A 285 5 5 HELIX 14 14 ASN A 298 LEU A 305 1 8 HELIX 15 15 PRO A 310 ALA A 317 1 8 SHEET 1 A 6 LEU A 63 THR A 69 0 SHEET 2 A 6 ALA A 28 GLN A 34 1 N VAL A 32 O ASP A 66 SHEET 3 A 6 VAL A 91 ILE A 95 1 O VAL A 93 N SER A 33 SHEET 4 A 6 ILE A 112 VAL A 117 1 O VAL A 113 N LEU A 92 SHEET 5 A 6 VAL A 136 SER A 140 1 O THR A 137 N PHE A 114 SHEET 6 A 6 GLN A 288 VAL A 289 1 O GLN A 288 N SER A 140 SHEET 1 B 6 LYS A 190 THR A 195 0 SHEET 2 B 6 SER A 161 TYR A 166 1 N ILE A 162 O VAL A 192 SHEET 3 B 6 VAL A 215 ALA A 218 1 O TYR A 217 N GLY A 163 SHEET 4 B 6 VAL A 242 GLY A 244 1 O PHE A 243 N ILE A 216 SHEET 5 B 6 ALA A 256 GLY A 259 1 O ALA A 256 N GLY A 244 SHEET 6 B 6 ASP A 294 ILE A 297 -1 O ASP A 294 N GLY A 259 LINK OE2 GLU A 64 ZN ZN A 401 1555 1555 2.05 LINK OD1 ASP A 66 ZN ZN A 401 1555 1555 1.98 LINK OE2 GLU A 130 ZN ZN A 402 1555 1555 1.81 LINK O ALA A 210 ZN ZN A 403 1555 1555 2.31 LINK O SER A 213 ZN ZN A 403 1555 1555 2.13 LINK OG1 THR A 240 ZN ZN A 403 1555 1555 2.13 LINK OD2 ASP A 286 ZN ZN A 402 1555 1555 1.99 LINK ZN ZN A 403 O HOH A 669 1555 1555 2.37 LINK C LEU A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N GLU A 178 1555 1555 1.33 LINK C GLY A 230 N MSE A 231 1555 1555 1.33 LINK C MSE A 231 N ILE A 232 1555 1555 1.32 LINK ZN ZN A 401 OD2 ASP A 66 1555 1555 2.62 LINK ZN ZN A 402 OE1 GLU A 130 1555 1555 2.74 LINK ZN ZN A 403 O HOH A 718 1555 1555 2.53 LINK ZN ZN A 401 OE2 GLU A 64 1555 22564 2.03 LINK ZN ZN A 401 OD1 ASP A 66 1555 22564 2.02 LINK ZN ZN A 401 OD2 ASP A 66 1555 22564 2.67 LINK ZN ZN A 402 OE1 GLU A 211 1555 15564 1.97 LINK ZN ZN A 402 O ALA A 238 1555 15564 2.07 SITE 1 AC1 2 GLU A 64 ASP A 66 SITE 1 AC2 4 GLU A 130 GLU A 211 ALA A 238 ASP A 286 SITE 1 AC3 5 ALA A 210 SER A 213 THR A 240 HOH A 669 SITE 2 AC3 5 HOH A 718 SITE 1 AC4 1 GLU A 59 SITE 1 AC5 12 HIS A 38 ALA A 40 ALA A 96 THR A 97 SITE 2 AC5 12 ALA A 116 VAL A 117 THR A 118 ASP A 141 SITE 3 AC5 12 ASN A 172 ILE A 220 ASN A 222 TYR A 262 CRYST1 144.256 144.256 144.256 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006932 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006932 0.00000