HEADER LYASE 02-JUL-07 2QHF TITLE MYCOBACTERIUM TUBERCULOSIS CHORISMATE SYNTHASE IN COMPLEX WITH NCA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHORISMATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PHOSPHOLYASE; COMPND 5 EC: 4.2.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 STRAIN: H37RV; SOURCE 4 GENE: AROC, AROF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24B(+) KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.BRUNING,G.P.BOURENKOV,N.I.STRIZHOV,H.D.BARTUNIK REVDAT 5 30-AUG-23 2QHF 1 REMARK SEQADV REVDAT 4 18-OCT-17 2QHF 1 REMARK REVDAT 3 13-JUL-11 2QHF 1 VERSN REVDAT 2 24-FEB-09 2QHF 1 VERSN REVDAT 1 15-JUL-08 2QHF 0 JRNL AUTH M.BRUNING,G.P.BOURENKOV,N.I.STRIZHOV,H.D.BARTUNIK JRNL TITL MYCOBACTERIUM TUBERCULOSIS CHORISMATE SYNTHASE IN COMPLEX JRNL TITL 2 WITH NCA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 93091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4977 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6784 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 376 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2875 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 473 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.203 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3148 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2997 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4300 ; 1.346 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6913 ; 0.836 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 8.417 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;32.803 ;22.279 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;12.576 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.996 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 484 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3682 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 656 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 623 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3007 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1580 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1811 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 300 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 165 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 42 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2062 ; 2.721 ; 8.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 835 ; 0.822 ; 8.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3278 ; 4.018 ;12.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1107 ; 5.189 ;16.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 998 ; 7.329 ;24.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98095 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1QXO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.8 M NH4-ACETATE, 0.1 M NA-ACETATE, REMARK 280 PH 4.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.18833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.37667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.18833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 106.37667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.18833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 106.37667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.18833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 106.37667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 40380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -222.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 132.58900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 132.58900 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C ACT A 505 LIES ON A SPECIAL POSITION. REMARK 375 CH3 ACT A 505 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 886 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 393 REMARK 465 ALA A 394 REMARK 465 PRO A 395 REMARK 465 ALA A 396 REMARK 465 ALA A 397 REMARK 465 ARG A 398 REMARK 465 VAL A 399 REMARK 465 SER A 400 REMARK 465 GLY A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 667 O HOH A 818 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 609 O HOH A 808 11655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 257 -0.13 73.42 REMARK 500 ASP A 286 42.33 -102.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 316 ILE A 317 -143.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCA A 493 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O11 RELATED DB: PDB REMARK 900 MYCOBACTERIUM TUBERCULOSIS CHORISMATE SYNTHASE REMARK 900 RELATED ID: 2O12 RELATED DB: PDB REMARK 900 MYCOBACTERIUM TUBERCULOSIS CHORISMATE SYNTHASE IN COMPLEX WITH FMN DBREF 2QHF A 1 392 UNP P63611 AROC_MYCTU 1 392 SEQADV 2QHF GLU A 393 UNP P63611 EXPRESSION TAG SEQADV 2QHF ALA A 394 UNP P63611 EXPRESSION TAG SEQADV 2QHF PRO A 395 UNP P63611 EXPRESSION TAG SEQADV 2QHF ALA A 396 UNP P63611 EXPRESSION TAG SEQADV 2QHF ALA A 397 UNP P63611 EXPRESSION TAG SEQADV 2QHF ARG A 398 UNP P63611 EXPRESSION TAG SEQADV 2QHF VAL A 399 UNP P63611 EXPRESSION TAG SEQADV 2QHF SER A 400 UNP P63611 EXPRESSION TAG SEQADV 2QHF GLY A 401 UNP P63611 EXPRESSION TAG SEQADV 2QHF HIS A 402 UNP P63611 EXPRESSION TAG SEQADV 2QHF HIS A 403 UNP P63611 EXPRESSION TAG SEQADV 2QHF HIS A 404 UNP P63611 EXPRESSION TAG SEQADV 2QHF HIS A 405 UNP P63611 EXPRESSION TAG SEQADV 2QHF HIS A 406 UNP P63611 EXPRESSION TAG SEQADV 2QHF HIS A 407 UNP P63611 EXPRESSION TAG SEQRES 1 A 407 MET LEU ARG TRP ILE THR ALA GLY GLU SER HIS GLY ARG SEQRES 2 A 407 ALA LEU VAL ALA VAL VAL GLU GLY MET VAL ALA GLY VAL SEQRES 3 A 407 HIS VAL THR SER ALA ASP ILE ALA ASP GLN LEU ALA ARG SEQRES 4 A 407 ARG ARG LEU GLY TYR GLY ARG GLY ALA ARG MET THR PHE SEQRES 5 A 407 GLU ARG ASP ALA VAL THR VAL LEU SER GLY ILE ARG HIS SEQRES 6 A 407 GLY SER THR LEU GLY GLY PRO ILE ALA ILE GLU ILE GLY SEQRES 7 A 407 ASN THR GLU TRP PRO LYS TRP GLU THR VAL MET ALA ALA SEQRES 8 A 407 ASP PRO VAL ASP PRO ALA GLU LEU ALA ASP VAL ALA ARG SEQRES 9 A 407 ASN ALA PRO LEU THR ARG PRO ARG PRO GLY HIS ALA ASP SEQRES 10 A 407 TYR ALA GLY MET LEU LYS TYR GLY PHE ASP ASP ALA ARG SEQRES 11 A 407 PRO VAL LEU GLU ARG ALA SER ALA ARG GLU THR ALA ALA SEQRES 12 A 407 ARG VAL ALA ALA GLY THR VAL ALA ARG ALA PHE LEU ARG SEQRES 13 A 407 GLN ALA LEU GLY VAL GLU VAL LEU SER HIS VAL ILE SER SEQRES 14 A 407 ILE GLY ALA SER ALA PRO TYR GLU GLY PRO PRO PRO ARG SEQRES 15 A 407 ALA GLU ASP LEU PRO ALA ILE ASP ALA SER PRO VAL ARG SEQRES 16 A 407 ALA TYR ASP LYS ALA ALA GLU ALA ASP MET ILE ALA GLN SEQRES 17 A 407 ILE GLU ALA ALA LYS LYS ASP GLY ASP THR LEU GLY GLY SEQRES 18 A 407 VAL VAL GLU ALA VAL ALA LEU GLY LEU PRO VAL GLY LEU SEQRES 19 A 407 GLY SER PHE THR SER GLY ASP HIS ARG LEU ASP SER GLN SEQRES 20 A 407 LEU ALA ALA ALA VAL MET GLY ILE GLN ALA ILE LYS GLY SEQRES 21 A 407 VAL GLU ILE GLY ASP GLY PHE GLN THR ALA ARG ARG ARG SEQRES 22 A 407 GLY SER ARG ALA HIS ASP GLU MET TYR PRO GLY PRO ASP SEQRES 23 A 407 GLY VAL VAL ARG SER THR ASN ARG ALA GLY GLY LEU GLU SEQRES 24 A 407 GLY GLY MET THR ASN GLY GLN PRO LEU ARG VAL ARG ALA SEQRES 25 A 407 ALA MET LYS PRO ILE SER THR VAL PRO ARG ALA LEU ALA SEQRES 26 A 407 THR VAL ASP LEU ALA THR GLY ASP GLU ALA VAL ALA ILE SEQRES 27 A 407 HIS GLN ARG SER ASP VAL CYS ALA VAL PRO ALA ALA GLY SEQRES 28 A 407 VAL VAL VAL GLU THR MET VAL ALA LEU VAL LEU ALA ARG SEQRES 29 A 407 ALA ALA LEU GLU LYS PHE GLY GLY ASP SER LEU ALA GLU SEQRES 30 A 407 THR GLN ARG ASN ILE ALA ALA TYR GLN ARG SER VAL ALA SEQRES 31 A 407 ASP ARG GLU ALA PRO ALA ALA ARG VAL SER GLY HIS HIS SEQRES 32 A 407 HIS HIS HIS HIS HET ACT A 502 4 HET ACT A 503 4 HET ACT A 504 4 HET ACT A 505 4 HET ACT A 506 4 HET ACT A 507 4 HET ACT A 508 4 HET ACT A 509 4 HET ACT A 510 4 HET ACT A 511 4 HET ACT A 512 4 HET ACT A 513 4 HET NA A 601 1 HET NA A 602 1 HET CL A 603 1 HET NCA A 493 9 HET TRS A 501 8 HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM NCA NICOTINAMIDE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 2 ACT 12(C2 H3 O2 1-) FORMUL 14 NA 2(NA 1+) FORMUL 16 CL CL 1- FORMUL 17 NCA C6 H6 N2 O FORMUL 18 TRS C4 H12 N O3 1+ FORMUL 19 HOH *473(H2 O) HELIX 1 1 THR A 29 ARG A 40 1 12 HELIX 2 2 GLY A 45 ARG A 49 5 5 HELIX 3 3 GLU A 81 GLU A 86 1 6 HELIX 4 4 ASP A 95 ASP A 101 1 7 HELIX 5 5 VAL A 102 ALA A 106 5 5 HELIX 6 6 ALA A 116 GLY A 125 1 10 HELIX 7 7 ALA A 129 SER A 137 1 9 HELIX 8 8 GLU A 140 GLY A 160 1 21 HELIX 9 9 ARG A 182 GLU A 184 5 3 HELIX 10 10 ASP A 185 SER A 192 1 8 HELIX 11 11 ASP A 198 GLY A 216 1 19 HELIX 12 12 SER A 239 HIS A 242 5 4 HELIX 13 13 ARG A 243 GLY A 254 1 12 HELIX 14 14 ASP A 265 ALA A 270 1 6 HELIX 15 15 ARG A 273 HIS A 278 1 6 HELIX 16 16 ALA A 346 GLY A 371 1 26 HELIX 17 17 SER A 374 ASP A 391 1 18 SHEET 1 A 4 ARG A 3 ALA A 7 0 SHEET 2 A 4 ALA A 14 GLU A 20 -1 O VAL A 16 N ALA A 7 SHEET 3 A 4 ILE A 73 GLY A 78 -1 O ILE A 73 N VAL A 19 SHEET 4 A 4 VAL A 57 SER A 61 -1 N THR A 58 O GLU A 76 SHEET 1 B 2 ILE A 63 ARG A 64 0 SHEET 2 B 2 SER A 67 THR A 68 -1 O SER A 67 N ARG A 64 SHEET 1 C 4 GLU A 162 ILE A 170 0 SHEET 2 C 4 GLY A 221 LEU A 228 -1 O GLU A 224 N HIS A 166 SHEET 3 C 4 LEU A 308 MET A 314 -1 O MET A 314 N GLY A 221 SHEET 4 C 4 ILE A 258 ILE A 263 -1 N LYS A 259 O ALA A 313 SHEET 1 D 2 MET A 281 TYR A 282 0 SHEET 2 D 2 VAL A 289 ARG A 290 -1 O VAL A 289 N TYR A 282 SHEET 1 E 2 LEU A 298 GLU A 299 0 SHEET 2 E 2 MET A 302 THR A 303 -1 O MET A 302 N GLU A 299 SHEET 1 F 2 ALA A 325 VAL A 327 0 SHEET 2 F 2 GLU A 334 VAL A 336 -1 O ALA A 335 N THR A 326 SITE 1 AC1 8 TRP A 4 ALA A 250 ALA A 251 MET A 357 SITE 2 AC1 8 HOH A 634 HOH A 831 HOH A 906 HOH A 979 SITE 1 AC2 4 GLN A 36 ARG A 152 ARG A 156 HOH A 805 SITE 1 AC3 6 SER A 10 ARG A 49 LEU A 133 SER A 137 SITE 2 AC3 6 HOH A 605 HOH A 723 SITE 1 AC4 2 ARG A 110 ALA A 335 SITE 1 AC5 4 ARG A 40 MET A 50 ARG A 139 HOH A1042 SITE 1 AC6 8 GLU A 9 SER A 10 GLY A 12 LEU A 15 SITE 2 AC6 8 GLY A 78 ASN A 79 ARG A 139 HOH A1055 SITE 1 AC7 8 LEU A 108 THR A 109 ARG A 110 ASP A 117 SITE 2 AC7 8 ILE A 338 HOH A 704 HOH A 724 HOH A 748 SITE 1 AC8 5 ARG A 182 GLY A 305 GLN A 306 HOH A 614 SITE 2 AC8 5 HOH A 959 SITE 1 AC9 5 ARG A 3 HOH A 856 HOH A 861 HOH A 889 SITE 2 AC9 5 HOH A1006 SITE 1 BC1 5 ALA A 34 ARG A 41 ARG A 54 ASP A 55 SITE 2 BC1 5 HOH A1076 SITE 1 BC2 6 GLY A 114 GLN A 256 ALA A 257 GLY A 300 SITE 2 BC2 6 HOH A1040 HOH A1059 SITE 1 BC3 4 ASP A 204 ALA A 207 HOH A 722 HOH A1070 SITE 1 BC4 5 LEU A 375 ALA A 376 HOH A 913 HOH A 920 SITE 2 BC4 5 HOH A 989 SITE 1 BC5 4 PRO A 180 ASN A 293 HOH A 960 HOH A1065 SITE 1 BC6 4 ARG A 112 THR A 319 GLN A 340 ARG A 341 SITE 1 BC7 10 ARG A 40 ARG A 46 ALA A 138 ILE A 255 SITE 2 BC7 10 GLN A 256 MET A 314 ILE A 317 ARG A 341 SITE 3 BC7 10 HOH A1041 HOH A1042 SITE 1 BC8 12 MET A 1 LEU A 2 GLY A 21 LEU A 367 SITE 2 BC8 12 GLU A 368 GLY A 371 GLY A 372 ASP A 373 SITE 3 BC8 12 HOH A 882 HOH A 910 HOH A1022 HOH A1062 CRYST1 132.589 132.589 159.565 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007542 0.004354 0.000000 0.00000 SCALE2 0.000000 0.008709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006267 0.00000