HEADER TRANSFERASE 02-JUL-07 2QHP TITLE CRYSTAL STRUCTURE OF FRUCTOKINASE (NP_810670.1) FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI-5482 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOKINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: E50, DSM 2079, NCTC 10582, VPI-5482; SOURCE 5 ATCC: 29148; SOURCE 6 GENE: NP_810670.1, BT_1757; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_810670.1, FRUCTOKINASE, PFKB FAMILY CARBOHYDRATE KINASE, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2QHP 1 REMARK SEQADV REVDAT 5 24-JUL-19 2QHP 1 REMARK LINK REVDAT 4 18-OCT-17 2QHP 1 REMARK REVDAT 3 13-JUL-11 2QHP 1 VERSN REVDAT 2 24-FEB-09 2QHP 1 VERSN REVDAT 1 10-JUL-07 2QHP 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF FRUCTOKINASE (NP_810670.1) FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1494 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1868 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.081 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2334 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1584 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3170 ; 1.575 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3891 ; 1.022 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 8.715 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;39.140 ;24.902 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 407 ;13.700 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.967 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2600 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 457 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 453 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1608 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1119 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1193 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 207 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.146 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.295 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.267 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1537 ; 2.044 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 592 ; 0.517 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2371 ; 2.807 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 944 ; 4.947 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 790 ; 6.831 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2622 19.7850 2.1340 REMARK 3 T TENSOR REMARK 3 T11: -0.0328 T22: -0.0370 REMARK 3 T33: -0.0391 T12: -0.0074 REMARK 3 T13: -0.0338 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.5494 L22: 0.8103 REMARK 3 L33: 0.6078 L12: -0.1896 REMARK 3 L13: -0.0237 L23: 0.2094 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: -0.0558 S13: 0.0089 REMARK 3 S21: 0.0279 S22: 0.0222 S23: -0.0098 REMARK 3 S31: 0.0417 S32: 0.0922 S33: -0.0381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. RESIDUES A1 AND A82-A87 ARE DISORDERED AND ARE NOT MODELED. REMARK 3 5. THREE 1,2-ETHANEDIOL (USED AS CRYOPROTECTANT) MOLECULES REMARK 3 HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. REMARK 4 REMARK 4 2QHP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97932 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.336 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NH4NO3, 20.0% PEG 3350, REMARK 280 NO BUFFER PH 6.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.48500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 25.48500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.65000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.27000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.65000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.27000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.48500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.65000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.27000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.48500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.65000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.27000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 LEU A 82 REMARK 465 ASP A 83 REMARK 465 ASP A 84 REMARK 465 GLU A 85 REMARK 465 GLY A 86 REMARK 465 VAL A 87 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 LEU A 16 CD1 CD2 REMARK 470 LYS A 21 CD CE NZ REMARK 470 GLU A 61 CD OE1 OE2 REMARK 470 LYS A 108 NZ REMARK 470 LYS A 235 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 210 CG - SE - CE ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 -35.76 -151.30 REMARK 500 ASP A 72 46.29 -82.24 REMARK 500 ASN A 153 70.15 36.19 REMARK 500 GLN A 156 -124.93 53.71 REMARK 500 TYR A 190 48.56 -140.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 2 ASN A 3 -110.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 298 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375200 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 2QHP A 1 295 UNP Q8A6W9 Q8A6W9_BACTN 1 295 SEQADV 2QHP GLY A 0 UNP Q8A6W9 EXPRESSION TAG SEQADV 2QHP MSE A 1 UNP Q8A6W9 MET 1 MODIFIED RESIDUE SEQADV 2QHP MSE A 8 UNP Q8A6W9 MET 8 MODIFIED RESIDUE SEQADV 2QHP MSE A 56 UNP Q8A6W9 MET 56 MODIFIED RESIDUE SEQADV 2QHP MSE A 140 UNP Q8A6W9 MET 140 MODIFIED RESIDUE SEQADV 2QHP MSE A 187 UNP Q8A6W9 MET 187 MODIFIED RESIDUE SEQADV 2QHP MSE A 210 UNP Q8A6W9 MET 210 MODIFIED RESIDUE SEQADV 2QHP MSE A 283 UNP Q8A6W9 MET 283 MODIFIED RESIDUE SEQRES 1 A 296 GLY MSE ASN ASN ILE ILE VAL GLY MSE GLY GLU ALA LEU SEQRES 2 A 296 TRP ASP VAL LEU PRO GLU GLY LYS LYS ILE GLY GLY ALA SEQRES 3 A 296 PRO ALA ASN PHE ALA TYR HIS VAL SER GLN PHE GLY PHE SEQRES 4 A 296 ASP SER ARG VAL VAL SER ALA VAL GLY ASN ASP GLU LEU SEQRES 5 A 296 GLY ASP GLU ILE MSE GLU VAL PHE LYS GLU LYS GLN LEU SEQRES 6 A 296 LYS ASN GLN ILE GLU ARG VAL ASP TYR PRO THR GLY THR SEQRES 7 A 296 VAL GLN VAL THR LEU ASP ASP GLU GLY VAL PRO CYS TYR SEQRES 8 A 296 GLU ILE LYS GLU GLY VAL ALA TRP ASP ASN ILE PRO PHE SEQRES 9 A 296 THR ASP GLU LEU LYS ARG LEU ALA LEU ASN THR ARG ALA SEQRES 10 A 296 VAL CYS PHE GLY SER LEU ALA GLN ARG ASN GLU VAL SER SEQRES 11 A 296 ARG ALA THR ILE ASN ARG PHE LEU ASP THR MSE PRO ASP SEQRES 12 A 296 ILE ASP GLY GLN LEU LYS ILE PHE ASP ILE ASN LEU ARG SEQRES 13 A 296 GLN ASP PHE TYR THR LYS GLU VAL LEU ARG GLU SER PHE SEQRES 14 A 296 LYS ARG CYS ASN ILE LEU LYS ILE ASN ASP GLU GLU LEU SEQRES 15 A 296 VAL THR ILE SER ARG MSE PHE GLY TYR PRO GLY ILE ASP SEQRES 16 A 296 LEU GLN ASP LYS CYS TRP ILE LEU LEU ALA LYS TYR ASN SEQRES 17 A 296 LEU LYS MSE LEU ILE LEU THR CYS GLY ILE ASN GLY SER SEQRES 18 A 296 TYR VAL PHE THR PRO GLY VAL VAL SER PHE GLN GLU THR SEQRES 19 A 296 PRO LYS VAL PRO VAL ALA ASP THR VAL GLY ALA GLY ASP SEQRES 20 A 296 SER PHE THR ALA ALA PHE CYS ALA SER ILE LEU ASN GLY SEQRES 21 A 296 LYS SER VAL PRO GLU ALA HIS LYS LEU ALA VAL GLU VAL SEQRES 22 A 296 SER ALA TYR VAL CYS THR GLN SER GLY ALA MSE PRO GLU SEQRES 23 A 296 LEU PRO VAL ILE LEU LYS ASP ARG LEU LEU MODRES 2QHP MSE A 8 MET SELENOMETHIONINE MODRES 2QHP MSE A 56 MET SELENOMETHIONINE MODRES 2QHP MSE A 140 MET SELENOMETHIONINE MODRES 2QHP MSE A 187 MET SELENOMETHIONINE MODRES 2QHP MSE A 210 MET SELENOMETHIONINE MODRES 2QHP MSE A 283 MET SELENOMETHIONINE HET MSE A 8 8 HET MSE A 56 8 HET MSE A 140 8 HET MSE A 187 13 HET MSE A 210 13 HET MSE A 283 8 HET EDO A 296 4 HET EDO A 297 4 HET EDO A 298 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 HOH *290(H2 O) HELIX 1 1 GLY A 24 PHE A 36 1 13 HELIX 2 2 ASP A 49 LYS A 62 1 14 HELIX 3 3 VAL A 96 ASN A 100 5 5 HELIX 4 4 THR A 104 ASN A 113 1 10 HELIX 5 5 SER A 121 ARG A 125 5 5 HELIX 6 6 ASN A 126 MSE A 140 1 15 HELIX 7 7 THR A 160 CYS A 171 1 12 HELIX 8 8 ASP A 178 PHE A 188 1 11 HELIX 9 9 ASP A 194 TYR A 206 1 13 HELIX 10 10 GLY A 216 ASN A 218 5 3 HELIX 11 11 GLY A 243 GLY A 259 1 17 HELIX 12 12 SER A 261 THR A 278 1 18 HELIX 13 13 PRO A 287 ASP A 292 1 6 HELIX 14 14 ARG A 293 LEU A 295 5 3 SHEET 1 A 9 ASN A 66 VAL A 71 0 SHEET 2 A 9 ASP A 39 GLY A 47 1 N VAL A 42 O GLN A 67 SHEET 3 A 9 ILE A 4 MSE A 8 1 N GLY A 7 O VAL A 43 SHEET 4 A 9 THR A 114 PHE A 119 1 O ARG A 115 N ILE A 4 SHEET 5 A 9 LEU A 147 ASP A 151 1 O ILE A 149 N VAL A 117 SHEET 6 A 9 ILE A 173 ASN A 177 1 O ILE A 173 N PHE A 150 SHEET 7 A 9 MSE A 210 THR A 214 1 O ILE A 212 N LEU A 174 SHEET 8 A 9 SER A 220 THR A 224 -1 O TYR A 221 N LEU A 213 SHEET 9 A 9 VAL A 227 GLN A 231 -1 O VAL A 227 N THR A 224 SHEET 1 B 4 GLY A 19 GLY A 23 0 SHEET 2 B 4 LEU A 12 LEU A 16 -1 N ASP A 14 O LYS A 21 SHEET 3 B 4 GLY A 76 VAL A 80 1 O VAL A 78 N TRP A 13 SHEET 4 B 4 TYR A 90 ILE A 92 -1 O GLU A 91 N GLN A 79 LINK C GLY A 7 N MSE A 8 1555 1555 1.32 LINK C MSE A 8 N GLY A 9 1555 1555 1.34 LINK C ILE A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N GLU A 57 1555 1555 1.34 LINK C THR A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N PRO A 141 1555 1555 1.36 LINK C ARG A 186 N MSE A 187 1555 1555 1.32 LINK C MSE A 187 N PHE A 188 1555 1555 1.33 LINK C LYS A 209 N MSE A 210 1555 1555 1.32 LINK C MSE A 210 N LEU A 211 1555 1555 1.33 LINK C ALA A 282 N MSE A 283 1555 1555 1.34 LINK C MSE A 283 N PRO A 284 1555 1555 1.34 SITE 1 AC1 4 TYR A 190 PRO A 191 GLY A 192 ILE A 193 SITE 1 AC2 5 ARG A 109 LYS A 291 ASP A 292 LEU A 295 SITE 2 AC2 5 HOH A 573 SITE 1 AC3 5 PHE A 188 TYR A 190 LEU A 202 LYS A 205 SITE 2 AC3 5 TYR A 206 CRYST1 81.300 152.540 50.970 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012300 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019619 0.00000