HEADER TRANSFERASE 03-JUL-07 2QIA TITLE STRUCTURAL BASIS FOR THE ACYL CHAIN SELECTIVITY AND MECHANISM OF UDP- TITLE 2 N-ACETYLGLUCOSAMINE ACYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O- COMPND 5 ACYLTRANSFERASE; COMPND 6 EC: 2.3.1.129; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: LPXA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/PLYSE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTO1 (PET 23C) KEYWDS LEFT-HANDED PARALLEL BETA HELIX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.H.WILLIAMS,C.R.H.RAETZ REVDAT 6 30-AUG-23 2QIA 1 REMARK HETSYN REVDAT 5 18-OCT-17 2QIA 1 REMARK REVDAT 4 30-JUN-09 2QIA 1 HELIX SHEET REVDAT 3 24-FEB-09 2QIA 1 VERSN REVDAT 2 16-OCT-07 2QIA 1 REMARK REVDAT 1 02-OCT-07 2QIA 0 JRNL AUTH A.H.WILLIAMS,C.R.H.RAETZ JRNL TITL STRUCTURAL BASIS FOR THE ACYL CHAIN SELECTIVITY AND JRNL TITL 2 MECHANISM OF UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 13543 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17698807 JRNL DOI 10.1073/PNAS.0705833104 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 30044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1517 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2015 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1974 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2067 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2802 ; 1.096 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 5.679 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;36.331 ;23.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;11.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.470 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1543 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1103 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1395 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 316 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 46 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1328 ; 0.385 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2072 ; 0.588 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 813 ; 1.115 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 730 ; 1.884 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.17800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1LXA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8-1.4 NA/K PHOSPHATE, PH 5.6-6.3, REMARK 280 30%-35% DIMETHYL SULFOXIDE(DMSO), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.57150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.57150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.57150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.57150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.57150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.57150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 48.57150 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 48.57150 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 48.57150 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 48.57150 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 48.57150 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 48.57150 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 48.57150 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 48.57150 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 48.57150 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 48.57150 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 48.57150 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 48.57150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMOTRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28796 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1057 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1072 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1255 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1062 O HOH A 1305 2.11 REMARK 500 O HOH A 1062 O HOH A 1267 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 19.41 55.94 REMARK 500 PHE A 150 -1.49 70.00 REMARK 500 PHE A 162 -4.83 75.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U20 A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QIV RELATED DB: PDB DBREF 2QIA A 1 262 UNP P0A722 LPXA_ECOLI 1 262 SEQRES 1 A 262 MET ILE ASP LYS SER ALA PHE VAL HIS PRO THR ALA ILE SEQRES 2 A 262 VAL GLU GLU GLY ALA SER ILE GLY ALA ASN ALA HIS ILE SEQRES 3 A 262 GLY PRO PHE CYS ILE VAL GLY PRO HIS VAL GLU ILE GLY SEQRES 4 A 262 GLU GLY THR VAL LEU LYS SER HIS VAL VAL VAL ASN GLY SEQRES 5 A 262 HIS THR LYS ILE GLY ARG ASP ASN GLU ILE TYR GLN PHE SEQRES 6 A 262 ALA SER ILE GLY GLU VAL ASN GLN ASP LEU LYS TYR ALA SEQRES 7 A 262 GLY GLU PRO THR ARG VAL GLU ILE GLY ASP ARG ASN ARG SEQRES 8 A 262 ILE ARG GLU SER VAL THR ILE HIS ARG GLY THR VAL GLN SEQRES 9 A 262 GLY GLY GLY LEU THR LYS VAL GLY SER ASP ASN LEU LEU SEQRES 10 A 262 MET ILE ASN ALA HIS ILE ALA HIS ASP CYS THR VAL GLY SEQRES 11 A 262 ASN ARG CYS ILE LEU ALA ASN ASN ALA THR LEU ALA GLY SEQRES 12 A 262 HIS VAL SER VAL ASP ASP PHE ALA ILE ILE GLY GLY MET SEQRES 13 A 262 THR ALA VAL HIS GLN PHE CYS ILE ILE GLY ALA HIS VAL SEQRES 14 A 262 MET VAL GLY GLY CYS SER GLY VAL ALA GLN ASP VAL PRO SEQRES 15 A 262 PRO TYR VAL ILE ALA GLN GLY ASN HIS ALA THR PRO PHE SEQRES 16 A 262 GLY VAL ASN ILE GLU GLY LEU LYS ARG ARG GLY PHE SER SEQRES 17 A 262 ARG GLU ALA ILE THR ALA ILE ARG ASN ALA TYR LYS LEU SEQRES 18 A 262 ILE TYR ARG SER GLY LYS THR LEU ASP GLU VAL LYS PRO SEQRES 19 A 262 GLU ILE ALA GLU LEU ALA GLU THR TYR PRO GLU VAL LYS SEQRES 20 A 262 ALA PHE THR ASP PHE PHE ALA ARG SER THR ARG GLY LEU SEQRES 21 A 262 ILE ARG HET U20 A 901 55 HETNAM U20 URIDINE-5'-DIPHOSPHATE-3-O-(R-3-HYDROXYMYRISTOYL)-N- HETNAM 2 U20 ACETYL-D-GLUCOSAMINE HETSYN U20 (2R,3R,4R,5S,6R)-3-(ACETYLAMINO)-2-{[(R)-{[(S)-{[(2R, HETSYN 2 U20 3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)- HETSYN 3 U20 3,4-DIHYDROX YTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY) HETSYN 4 U20 PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-5-HYDROXY-6- HETSYN 5 U20 (HYDROXYMETHYL)TETRAHYDRO-2H- PYRAN-4-YL (3R)-3- HETSYN 6 U20 HYDROXYTETRADECANOATE FORMUL 2 U20 C31 H53 N3 O19 P2 FORMUL 3 HOH *412(H2 O) HELIX 1 1 ASN A 198 ARG A 205 1 8 HELIX 2 2 SER A 208 ARG A 224 1 17 HELIX 3 3 THR A 228 GLU A 241 1 14 HELIX 4 4 THR A 242 GLU A 245 5 4 HELIX 5 5 VAL A 246 SER A 256 1 11 SHEET 1 BS1 9 MET A 1 ASP A 3 0 SHEET 2 BS1 9 ALA A 18 GLY A 21 1 N ILE A 20 O MET A 1 SHEET 3 BS1 9 VAL A 36 GLY A 39 1 N ILE A 38 O SER A 19 SHEET 4 BS1 9 THR A 54 GLY A 57 1 N ILE A 56 O GLU A 37 SHEET 5 BS1 9 ARG A 83 GLY A 87 1 N ILE A 86 O LYS A 55 SHEET 6 BS1 9 GLY A 107 GLY A 112 1 N VAL A 111 O GLU A 85 SHEET 7 BS1 9 CYS A 127 GLY A 130 1 N VAL A 129 O LYS A 110 SHEET 8 BS1 9 VAL A 145 ASP A 148 1 N VAL A 147 O THR A 128 SHEET 9 BS1 9 CYS A 163 GLY A 166 1 N ILE A 165 O SER A 146 SHEET 1 BS211 PHE A 7 HIS A 9 0 SHEET 2 BS211 ALA A 24 GLY A 27 1 N ILE A 26 O PHE A 7 SHEET 3 BS211 THR A 42 LYS A 45 1 N LEU A 44 O HIS A 25 SHEET 4 BS211 ASN A 60 TYR A 63 1 N ILE A 62 O VAL A 43 SHEET 5 BS211 ASN A 90 ARG A 93 1 N ILE A 92 O GLU A 61 SHEET 6 BS211 ASN A 115 MET A 118 1 N LEU A 117 O ARG A 91 SHEET 7 BS211 CYS A 133 ALA A 136 1 N LEU A 135 O LEU A 116 SHEET 8 BS211 ALA A 151 GLY A 154 1 N ILE A 153 O ILE A 134 SHEET 9 BS211 VAL A 169 GLY A 172 1 N VAL A 171 O ILE A 152 SHEET 10 BS211 VAL A 185 GLN A 188 1 N ALA A 187 O MET A 170 SHEET 11 BS211 THR A 193 GLY A 196 -1 N PHE A 195 O ILE A 186 SHEET 1 BS3 9 ILE A 13 GLU A 15 0 SHEET 2 BS3 9 CYS A 30 GLY A 33 1 N VAL A 32 O ILE A 13 SHEET 3 BS3 9 VAL A 48 ASN A 51 1 N VAL A 50 O ILE A 31 SHEET 4 BS3 9 ALA A 66 GLU A 70 1 N ILE A 68 O VAL A 49 SHEET 5 BS3 9 VAL A 96 HIS A 99 1 O VAL A 96 N SER A 67 SHEET 6 BS3 9 ALA A 121 ALA A 124 1 O ALA A 121 N THR A 97 SHEET 7 BS3 9 ALA A 139 ALA A 142 1 O ALA A 139 N HIS A 122 SHEET 8 BS3 9 THR A 157 HIS A 160 1 O THR A 157 N THR A 140 SHEET 9 BS3 9 SER A 175 VAL A 177 1 O SER A 175 N ALA A 158 CISPEP 1 ASN A 190 HIS A 191 0 2.32 SITE 1 AC1 27 GLN A 73 ASP A 74 LEU A 75 LYS A 76 SITE 2 AC1 27 HIS A 122 ALA A 124 HIS A 125 ASN A 137 SITE 3 AC1 27 ALA A 142 GLY A 143 HIS A 144 ILE A 152 SITE 4 AC1 27 GLN A 161 PHE A 162 MET A 170 HIS A 191 SITE 5 AC1 27 ASN A 198 GLU A 200 GLY A 201 ARG A 204 SITE 6 AC1 27 ARG A 205 HOH A 907 HOH A 918 HOH A1108 SITE 7 AC1 27 HOH A1125 HOH A1228 HOH A1301 CRYST1 97.143 97.143 97.143 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010294 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010294 0.00000