HEADER TRANSCRIPTION 03-JUL-07 2QIB TITLE CRYSTAL STRUCTURE OF TETR-FAMILY TRANSCRIPTIONAL REGULATOR FROM TITLE 2 STREPTOMYCES COELICOLOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETR-FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HTH DNA BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR A3(2); SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: A3(2), M145; SOURCE 5 ATCC: BAA-471; SOURCE 6 GENE: GI:21220695, SCO2223, SC10B7.18; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS TETR-FAMILY TRANSCRIPTIONAL REGULATOR, HTH DNA BINDING, STRUCTURAL KEYWDS 2 GENOMICS, MCSG, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,X.XU,H.ZHENG,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 2QIB 1 VERSN REVDAT 2 24-FEB-09 2QIB 1 VERSN REVDAT 1 04-SEP-07 2QIB 0 JRNL AUTH R.ZHANG,X.XU,H.ZHENG,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF TETR-FAMILY TRANSCRIPTIONAL JRNL TITL 2 REGULATOR FROM STREPTOMYCES COELICOLOR. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 52953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2832 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3540 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 619 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3482 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4696 ; 1.374 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 4.232 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;30.079 ;22.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;13.055 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;15.786 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2623 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1921 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2449 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 483 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.223 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2193 ; 0.962 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3423 ; 1.563 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1423 ; 2.885 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1273 ; 4.255 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 11 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 50 REMARK 3 RESIDUE RANGE : A 51 A 100 REMARK 3 RESIDUE RANGE : A 101 A 150 REMARK 3 RESIDUE RANGE : A 151 A 200 REMARK 3 RESIDUE RANGE : A 201 A 230 REMARK 3 RESIDUE RANGE : B 14 B 60 REMARK 3 RESIDUE RANGE : B 61 B 120 REMARK 3 RESIDUE RANGE : B 121 B 170 REMARK 3 RESIDUE RANGE : B 171 B 228 REMARK 3 RESIDUE RANGE : A 701 A 703 REMARK 3 RESIDUE RANGE : A 705 A 986 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0670 8.2930 9.5440 REMARK 3 T TENSOR REMARK 3 T11: -0.0316 T22: -0.0085 REMARK 3 T33: -0.0623 T12: 0.0127 REMARK 3 T13: -0.0037 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.1455 L22: 0.3539 REMARK 3 L33: 0.5509 L12: -0.0240 REMARK 3 L13: 0.1193 L23: 0.1735 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: -0.0707 S13: 0.0210 REMARK 3 S21: -0.0127 S22: -0.0632 S23: 0.0402 REMARK 3 S31: 0.0172 S32: -0.0358 S33: 0.0323 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52953 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 62.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KH2PO4, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.14600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTED AS DIMER. THE DEPOSITED MOLA AND MOLB REMARK 300 REPRESENT THE DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7560 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 VAL A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 GLY A 231 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 VAL B 5 REMARK 465 ARG B 6 REMARK 465 ARG B 7 REMARK 465 ARG B 8 REMARK 465 MSE B 9 REMARK 465 GLY B 10 REMARK 465 VAL B 11 REMARK 465 GLU B 12 REMARK 465 GLU B 13 REMARK 465 GLY B 112 REMARK 465 GLY B 113 REMARK 465 PRO B 114 REMARK 465 ALA B 115 REMARK 465 VAL B 116 REMARK 465 GLY B 117 REMARK 465 ASP B 214 REMARK 465 ALA B 229 REMARK 465 ARG B 230 REMARK 465 GLY B 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1030 O HOH A 1033 1.95 REMARK 500 O GLY A 112 O HOH A 1040 1.98 REMARK 500 OE1 GLU A 12 NH1 ARG A 15 2.04 REMARK 500 O HOH A 788 O HOH A 1038 2.11 REMARK 500 O HOH A 926 O HOH B 745 2.11 REMARK 500 OD1 ASP B 126 O HOH B 928 2.12 REMARK 500 O HOH B 723 O HOH B 754 2.18 REMARK 500 O HOH B 886 O HOH B 970 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1030 O HOH B 984 2555 1.98 REMARK 500 O HOH A 857 O HOH B 723 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 175 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 175 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 144 76.62 -117.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 906 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 907 DISTANCE = 5.26 ANGSTROMS REMARK 525 HOH A 908 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH A 942 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A 951 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A 995 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1005 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A1028 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 878 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 901 DISTANCE = 5.52 ANGSTROMS REMARK 525 HOH B 936 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B 963 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH B 965 DISTANCE = 6.69 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G B 704 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G B 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6280 RELATED DB: TARGETDB DBREF 2QIB A 1 230 UNP Q9KZ14 Q9KZ14_STRCO 1 230 DBREF 2QIB B 1 230 UNP Q9KZ14 Q9KZ14_STRCO 1 230 SEQADV 2QIB MSE A 1 UNP Q9KZ14 MET 1 MODIFIED RESIDUE SEQADV 2QIB MSE A 9 UNP Q9KZ14 MET 9 MODIFIED RESIDUE SEQADV 2QIB MSE A 92 UNP Q9KZ14 MET 92 MODIFIED RESIDUE SEQADV 2QIB MSE A 110 UNP Q9KZ14 MET 110 MODIFIED RESIDUE SEQADV 2QIB MSE A 190 UNP Q9KZ14 MET 190 MODIFIED RESIDUE SEQADV 2QIB MSE A 200 UNP Q9KZ14 MET 200 MODIFIED RESIDUE SEQADV 2QIB GLY A 231 UNP Q9KZ14 EXPRESSION TAG SEQADV 2QIB MSE B 1 UNP Q9KZ14 MET 1 MODIFIED RESIDUE SEQADV 2QIB MSE B 9 UNP Q9KZ14 MET 9 MODIFIED RESIDUE SEQADV 2QIB MSE B 92 UNP Q9KZ14 MET 92 MODIFIED RESIDUE SEQADV 2QIB MSE B 110 UNP Q9KZ14 MET 110 MODIFIED RESIDUE SEQADV 2QIB MSE B 190 UNP Q9KZ14 MET 190 MODIFIED RESIDUE SEQADV 2QIB MSE B 200 UNP Q9KZ14 MET 200 MODIFIED RESIDUE SEQADV 2QIB GLY B 231 UNP Q9KZ14 EXPRESSION TAG SEQRES 1 A 231 MSE THR THR GLY VAL ARG ARG ARG MSE GLY VAL GLU GLU SEQRES 2 A 231 ARG ARG GLN GLN LEU ILE GLY VAL ALA LEU ASP LEU PHE SEQRES 3 A 231 SER ARG ARG SER PRO ASP GLU VAL SER ILE ASP GLU ILE SEQRES 4 A 231 ALA SER ALA ALA GLY ILE SER ARG PRO LEU VAL TYR HIS SEQRES 5 A 231 TYR PHE PRO GLY LYS LEU SER LEU TYR GLU ALA ALA LEU SEQRES 6 A 231 GLN ARG ALA SER ASP ASP LEU ALA ASP ARG PHE VAL GLU SEQRES 7 A 231 PRO ARG GLN GLY PRO LEU GLY ALA ARG LEU LEU ARG VAL SEQRES 8 A 231 MSE GLY ARG TYR PHE ASP PHE VAL ASP GLU HIS GLY PRO SEQRES 9 A 231 GLY PHE SER ALA LEU MSE ARG GLY GLY PRO ALA VAL GLY SEQRES 10 A 231 SER THR THR THR ASN ALA LEU VAL ASP SER VAL ARG GLN SEQRES 11 A 231 ALA ALA TYR VAL GLN ILE LEU SER HIS LEU ASP VAL THR SEQRES 12 A 231 GLU PRO PRO ALA ARG LEU GLU LEU VAL VAL ARG SER TRP SEQRES 13 A 231 ILE SER LEU ALA GLU SER THR ALA LEU LEU TRP LEU ASP SEQRES 14 A 231 GLY ARG ARG ILE PRO ARG ALA GLU LEU GLU THR GLN LEU SEQRES 15 A 231 VAL HIS ASP PHE ALA ALA LEU MSE ALA VAL SER ALA ALA SEQRES 16 A 231 TYR ASP GLU GLU MSE GLY ALA LEU VAL ARG ARG VAL LEU SEQRES 17 A 231 ALA ASP GLU PRO GLU ASP GLY PRO PHE GLY ASP LEU VAL SEQRES 18 A 231 ASP ARG LEU LEU ALA LEU SER ALA ARG GLY SEQRES 1 B 231 MSE THR THR GLY VAL ARG ARG ARG MSE GLY VAL GLU GLU SEQRES 2 B 231 ARG ARG GLN GLN LEU ILE GLY VAL ALA LEU ASP LEU PHE SEQRES 3 B 231 SER ARG ARG SER PRO ASP GLU VAL SER ILE ASP GLU ILE SEQRES 4 B 231 ALA SER ALA ALA GLY ILE SER ARG PRO LEU VAL TYR HIS SEQRES 5 B 231 TYR PHE PRO GLY LYS LEU SER LEU TYR GLU ALA ALA LEU SEQRES 6 B 231 GLN ARG ALA SER ASP ASP LEU ALA ASP ARG PHE VAL GLU SEQRES 7 B 231 PRO ARG GLN GLY PRO LEU GLY ALA ARG LEU LEU ARG VAL SEQRES 8 B 231 MSE GLY ARG TYR PHE ASP PHE VAL ASP GLU HIS GLY PRO SEQRES 9 B 231 GLY PHE SER ALA LEU MSE ARG GLY GLY PRO ALA VAL GLY SEQRES 10 B 231 SER THR THR THR ASN ALA LEU VAL ASP SER VAL ARG GLN SEQRES 11 B 231 ALA ALA TYR VAL GLN ILE LEU SER HIS LEU ASP VAL THR SEQRES 12 B 231 GLU PRO PRO ALA ARG LEU GLU LEU VAL VAL ARG SER TRP SEQRES 13 B 231 ILE SER LEU ALA GLU SER THR ALA LEU LEU TRP LEU ASP SEQRES 14 B 231 GLY ARG ARG ILE PRO ARG ALA GLU LEU GLU THR GLN LEU SEQRES 15 B 231 VAL HIS ASP PHE ALA ALA LEU MSE ALA VAL SER ALA ALA SEQRES 16 B 231 TYR ASP GLU GLU MSE GLY ALA LEU VAL ARG ARG VAL LEU SEQRES 17 B 231 ALA ASP GLU PRO GLU ASP GLY PRO PHE GLY ASP LEU VAL SEQRES 18 B 231 ASP ARG LEU LEU ALA LEU SER ALA ARG GLY MODRES 2QIB MSE A 9 MET SELENOMETHIONINE MODRES 2QIB MSE A 92 MET SELENOMETHIONINE MODRES 2QIB MSE A 110 MET SELENOMETHIONINE MODRES 2QIB MSE A 190 MET SELENOMETHIONINE MODRES 2QIB MSE A 200 MET SELENOMETHIONINE MODRES 2QIB MSE B 92 MET SELENOMETHIONINE MODRES 2QIB MSE B 110 MET SELENOMETHIONINE MODRES 2QIB MSE B 190 MET SELENOMETHIONINE MODRES 2QIB MSE B 200 MET SELENOMETHIONINE HET MSE A 9 8 HET MSE A 92 8 HET MSE A 110 8 HET MSE A 190 8 HET MSE A 200 8 HET MSE B 92 8 HET MSE B 110 8 HET MSE B 190 8 HET MSE B 200 8 HET P6G A 701 19 HET P6G A 703 19 HET P6G B 702 19 HET P6G B 704 18 HETNAM MSE SELENOMETHIONINE HETNAM P6G HEXAETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 P6G 4(C12 H26 O7) FORMUL 7 HOH *619(H2 O) HELIX 1 1 GLY A 10 ARG A 29 1 20 HELIX 2 2 SER A 30 VAL A 34 5 5 HELIX 3 3 SER A 35 GLY A 44 1 10 HELIX 4 4 SER A 46 PHE A 54 1 9 HELIX 5 5 GLY A 56 PHE A 76 1 21 HELIX 6 6 PRO A 83 HIS A 102 1 20 HELIX 7 7 HIS A 102 GLY A 117 1 16 HELIX 8 8 SER A 118 ASP A 141 1 24 HELIX 9 9 PRO A 146 ASP A 169 1 24 HELIX 10 10 PRO A 174 ALA A 195 1 22 HELIX 11 11 ASP A 197 ASP A 210 1 14 HELIX 12 12 GLY A 215 ALA A 229 1 15 HELIX 13 13 ARG B 14 ARG B 29 1 16 HELIX 14 14 SER B 30 VAL B 34 5 5 HELIX 15 15 SER B 35 GLY B 44 1 10 HELIX 16 16 SER B 46 PHE B 54 1 9 HELIX 17 17 GLY B 56 PHE B 76 1 21 HELIX 18 18 PRO B 83 HIS B 102 1 20 HELIX 19 19 HIS B 102 ARG B 111 1 10 HELIX 20 20 SER B 118 ASP B 141 1 24 HELIX 21 21 PRO B 146 ASP B 169 1 24 HELIX 22 22 PRO B 174 ASP B 197 1 24 HELIX 23 23 ASP B 197 LEU B 208 1 12 HELIX 24 24 GLY B 215 SER B 228 1 14 LINK C MSE A 9 N GLY A 10 1555 1555 1.34 LINK C VAL A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N GLY A 93 1555 1555 1.34 LINK C LEU A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N ARG A 111 1555 1555 1.33 LINK C LEU A 189 N MSE A 190 1555 1555 1.33 LINK C MSE A 190 N ALA A 191 1555 1555 1.33 LINK C GLU A 199 N MSE A 200 1555 1555 1.33 LINK C MSE A 200 N GLY A 201 1555 1555 1.34 LINK C VAL B 91 N MSE B 92 1555 1555 1.34 LINK C MSE B 92 N GLY B 93 1555 1555 1.34 LINK C LEU B 109 N MSE B 110 1555 1555 1.33 LINK C MSE B 110 N ARG B 111 1555 1555 1.33 LINK C LEU B 189 N MSE B 190 1555 1555 1.33 LINK C MSE B 190 N ALA B 191 1555 1555 1.33 LINK C GLU B 199 N MSE B 200 1555 1555 1.34 LINK C MSE B 200 N GLY B 201 1555 1555 1.33 SITE 1 AC1 8 LEU A 23 PHE A 26 TYR A 61 ALA A 64 SITE 2 AC1 8 LEU A 65 PHE A 106 VAL A 128 GLU A 161 SITE 1 AC2 8 LEU B 72 PHE B 76 MSE B 92 GLY B 105 SITE 2 AC2 8 PHE B 106 MSE B 110 P6G B 704 HOH B 771 SITE 1 AC3 9 PHE A 76 LEU A 88 VAL A 91 HIS A 139 SITE 2 AC3 9 VAL A 183 HIS A 184 PHE A 186 VAL A 207 SITE 3 AC3 9 PHE A 217 SITE 1 AC4 7 VAL B 91 HIS B 139 PHE B 186 GLU B 211 SITE 2 AC4 7 PRO B 216 PHE B 217 P6G B 702 CRYST1 54.607 76.292 65.262 90.00 107.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018313 0.000000 0.005787 0.00000 SCALE2 0.000000 0.013108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016070 0.00000 HETATM 1 N MSE A 9 35.248 19.881 -12.750 1.00 46.20 N HETATM 2 CA MSE A 9 35.258 18.681 -11.853 1.00 46.81 C HETATM 3 C MSE A 9 35.132 17.352 -12.617 1.00 43.58 C HETATM 4 O MSE A 9 34.709 17.324 -13.782 1.00 43.57 O HETATM 5 CB MSE A 9 34.174 18.801 -10.769 1.00 46.61 C HETATM 6 CG MSE A 9 32.731 18.655 -11.243 1.00 48.50 C HETATM 7 SE MSE A 9 31.451 19.250 -9.857 1.00 54.97 SE HETATM 8 CE MSE A 9 31.945 21.162 -9.859 1.00 51.52 C