HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-JUL-07 2QIK TITLE CRYSTAL STRUCTURE OF YKQA FROM BACILLUS SUBTILIS. NORTHEAST STRUCTURAL TITLE 2 GENOMICS TARGET SR631 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0131 PROTEIN YKQA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YKQA, YLXU, YZAB, BSU14500; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS YKQA, NESG, SR631, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.BENACH,Y.CHEN,F.FOROUHAR,J.SEETHARAMAN,M.C.BARAN,K.CUNNINGHAM,L.- AUTHOR 2 C.MA,L.OWENS,C.X.CHEN,X.RONG,H.JANJUA,T.B.ACTON,G.T.MONTELIONE, AUTHOR 3 L.TONG,J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 24-JAN-18 2QIK 1 AUTHOR JRNL REVDAT 3 18-OCT-17 2QIK 1 REMARK REVDAT 2 24-FEB-09 2QIK 1 VERSN REVDAT 1 24-JUL-07 2QIK 0 JRNL AUTH J.BENACH,Y.CHEN,F.FOROUHAR,J.SEETHARAMAN,M.C.BARAN, JRNL AUTH 2 K.CUNNINGHAM,L.-C.MA,L.OWENS,C.X.CHEN,X.RONG,H.JANJUA, JRNL AUTH 3 T.B.ACTON,G.T.MONTELIONE,L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF YKQA FROM BACILLUS SUBTILIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 55139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2801 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.0990 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.1780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 446 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.436 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2301 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2044 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3116 ; 2.056 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4776 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 6.376 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;31.399 ;23.596 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;13.158 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2570 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 499 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 479 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2070 ; 0.210 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1126 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1307 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 228 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.320 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 57 ; 0.299 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1602 ; 3.040 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 562 ; 0.968 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2196 ; 3.506 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1062 ; 5.173 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 910 ; 6.405 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5071 ; 2.515 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 446 ;16.723 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4284 ; 5.757 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.17900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.08, RESOLVE 2.08 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL, 0.1 NA CITRATE, 60% PEG REMARK 280 400, MICROBATCH UNDER OIL, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.06550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AU CONTAINS THE BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 42 REMARK 465 GLU A 43 REMARK 465 LYS A 102 REMARK 465 ASP A 103 REMARK 465 GLY A 104 REMARK 465 CYS A 105 REMARK 465 ALA A 106 REMARK 465 GLY A 107 REMARK 465 LEU A 279 REMARK 465 GLU A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 124 O HOH A 473 2.00 REMARK 500 O HOH A 458 O HOH A 744 2.10 REMARK 500 OE1 GLU A 63 O HOH A 548 2.12 REMARK 500 O HOH A 454 O HOH A 739 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 7 CB VAL A 7 CG1 -0.128 REMARK 500 ASN A 50 CG ASN A 50 OD1 -0.232 REMARK 500 TYR A 56 CE1 TYR A 56 CZ -0.098 REMARK 500 GLU A 63 CG GLU A 63 CD -0.111 REMARK 500 GLU A 63 CD GLU A 63 OE2 0.069 REMARK 500 LYS A 71 CD LYS A 71 CE -0.160 REMARK 500 GLU A 87 CD GLU A 87 OE2 0.075 REMARK 500 ARG A 214 NE ARG A 214 CZ 0.078 REMARK 500 ARG A 214 CZ ARG A 214 NH2 -0.079 REMARK 500 GLU A 263 CD GLU A 263 OE1 0.080 REMARK 500 ARG A 270 CG ARG A 270 CD 0.215 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 51 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 GLU A 63 OE1 - CD - OE2 ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP A 65 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 MSE A 100 CA - CB - CG ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 142 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 22 -132.59 56.15 REMARK 500 SER A 125 60.11 39.80 REMARK 500 PHE A 168 77.27 -108.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A 50 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 90 -12.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR631 RELATED DB: TARGETDB DBREF 2QIK A 1 278 UNP P39759 YKQA_BACSU 1 277 SEQADV 2QIK MSE A 1 UNP P39759 MET 1 MODIFIED RESIDUE SEQADV 2QIK MSE A 100 UNP P39759 MET 99 MODIFIED RESIDUE SEQADV 2QIK MSE A 121 UNP P39759 MET 120 MODIFIED RESIDUE SEQADV 2QIK MSE A 138 UNP P39759 MET 137 MODIFIED RESIDUE SEQADV 2QIK MSE A 180 UNP P39759 MET 179 MODIFIED RESIDUE SEQADV 2QIK MSE A 272 UNP P39759 MET 271 MODIFIED RESIDUE SEQADV 2QIK LEU A 279 UNP P39759 CLONING ARTIFACT SEQADV 2QIK GLU A 280 UNP P39759 CLONING ARTIFACT SEQADV 2QIK HIS A 281 UNP P39759 CLONING ARTIFACT SEQADV 2QIK HIS A 282 UNP P39759 CLONING ARTIFACT SEQADV 2QIK HIS A 283 UNP P39759 CLONING ARTIFACT SEQADV 2QIK HIS A 284 UNP P39759 CLONING ARTIFACT SEQADV 2QIK HIS A 285 UNP P39759 CLONING ARTIFACT SEQADV 2QIK HIS A 286 UNP P39759 CLONING ARTIFACT SEQRES 1 A 285 MSE ASN SER LEU LEU PHE VAL TYR GLY THR LEU ARG LYS SEQRES 2 A 285 HIS GLU LYS ASN HIS HIS LEU LEU ALA GLN SER ALA CYS SEQRES 3 A 285 ILE ASN GLU GLN ALA ARG THR LYS GLY SER LEU PHE ALA SEQRES 4 A 285 ALA LYS GLU GLY PRO THR VAL VAL PHE ASN ASP GLU ASP SEQRES 5 A 285 GLU GLY TYR ILE TYR GLY GLU VAL TYR GLU ALA ASP GLU SEQRES 6 A 285 LEU CYS ILE HIS LYS LEU ASP GLN PHE PHE GLN GLY TYR SEQRES 7 A 285 HIS LYS GLN THR VAL PHE VAL GLU THR ASP VAL GLY ILE SEQRES 8 A 285 LYS ILE ALA LEU ILE TYR PHE MSE ASN LYS ASP GLY CYS SEQRES 9 A 285 ALA GLY PHE THR LYS ILE SER SER GLY ASP TRP LYS GLU SEQRES 10 A 285 HIS GLN MSE ILE SER LYS SER LYS ASN PRO ILE TYR TYR SEQRES 11 A 285 PHE ALA TYR GLY SER CYS MSE ASP ASN ALA ARG PHE GLN SEQRES 12 A 285 LYS ALA GLY VAL ASP HIS TYR PHE GLN ASP PRO VAL GLY SEQRES 13 A 285 ARG ALA VAL LEU LYS GLY TYR THR THR ARG PHE THR LEU SEQRES 14 A 285 LYS ARG GLU ASP GLY SER ARG ALA ASP MSE LEU GLU ASP SEQRES 15 A 285 GLY GLY THR THR GLU GLY VAL LEU TYR ARG ILE PRO TYR SEQRES 16 A 285 SER ALA LEU SER TYR LEU TYR LYS ARG GLU GLY VAL GLU SEQRES 17 A 285 SER LEU THR TYR ARG PRO ALA PHE VAL ASP VAL GLU ALA SEQRES 18 A 285 GLY GLY ARG HIS TYR LYS ASP CYS LEU THR PHE LEU VAL SEQRES 19 A 285 LEU GLN LYS GLU ALA GLU ILE ALA PRO PRO GLN HIS TYR SEQRES 20 A 285 GLN ILE GLU ILE GLU ARG GLY ALA GLU LEU TYR LEU SER SEQRES 21 A 285 PRO GLU PHE THR GLU LYS LEU LYS ARG HIS MSE ASN SER SEQRES 22 A 285 LEU PRO LYS GLY LEU GLU HIS HIS HIS HIS HIS HIS MODRES 2QIK MSE A 1 MET SELENOMETHIONINE MODRES 2QIK MSE A 100 MET SELENOMETHIONINE MODRES 2QIK MSE A 121 MET SELENOMETHIONINE MODRES 2QIK MSE A 138 MET SELENOMETHIONINE MODRES 2QIK MSE A 180 MET SELENOMETHIONINE MODRES 2QIK MSE A 272 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 100 8 HET MSE A 121 8 HET MSE A 138 8 HET MSE A 180 8 HET MSE A 272 8 HET CIT A 301 13 HETNAM MSE SELENOMETHIONINE HETNAM CIT CITRIC ACID FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 CIT C6 H8 O7 FORMUL 3 HOH *446(H2 O) HELIX 1 1 ASN A 17 ALA A 22 5 6 HELIX 2 2 ASP A 65 PHE A 76 1 12 HELIX 3 3 ASP A 115 LYS A 124 1 10 HELIX 4 4 GLY A 135 ASP A 139 5 5 HELIX 5 5 ASN A 140 ALA A 146 1 7 HELIX 6 6 VAL A 148 PHE A 152 5 5 HELIX 7 7 PRO A 195 SER A 197 5 3 HELIX 8 8 ALA A 198 GLU A 206 1 9 HELIX 9 9 PRO A 245 LEU A 260 1 16 HELIX 10 10 SER A 261 LEU A 275 1 15 SHEET 1 A 6 SER A 3 VAL A 7 0 SHEET 2 A 6 TYR A 56 ALA A 64 -1 O ALA A 64 N SER A 3 SHEET 3 A 6 ALA A 25 LYS A 34 -1 N THR A 33 O ILE A 57 SHEET 4 A 6 HIS A 80 THR A 88 -1 O GLU A 87 N ARG A 32 SHEET 5 A 6 GLY A 91 PHE A 99 -1 O LYS A 93 N VAL A 86 SHEET 6 A 6 SER A 3 VAL A 7 1 N PHE A 6 O LEU A 96 SHEET 1 B 3 THR A 46 VAL A 48 0 SHEET 2 B 3 SER A 36 ALA A 39 -1 N PHE A 38 O THR A 46 SHEET 3 B 3 THR A 109 ILE A 111 -1 O THR A 109 N ALA A 39 SHEET 1 C 3 ILE A 129 ALA A 133 0 SHEET 2 C 3 THR A 186 ILE A 194 -1 O ILE A 194 N ILE A 129 SHEET 3 C 3 PRO A 155 LYS A 162 -1 N ALA A 159 O GLY A 189 SHEET 1 D 2 THR A 165 ARG A 172 0 SHEET 2 D 2 GLY A 175 LEU A 181 -1 O LEU A 181 N THR A 165 SHEET 1 E 2 TYR A 213 ALA A 222 0 SHEET 2 E 2 ARG A 225 VAL A 235 -1 O TYR A 227 N VAL A 220 LINK C MSE A 1 N ASN A 2 1555 1555 1.32 LINK C PHE A 99 N MSE A 100 1555 1555 1.32 LINK C MSE A 100 N ASN A 101 1555 1555 1.31 LINK C GLN A 120 N MSE A 121 1555 1555 1.32 LINK C MSE A 121 N ILE A 122 1555 1555 1.34 LINK C CYS A 137 N MSE A 138 1555 1555 1.34 LINK C MSE A 138 N ASP A 139 1555 1555 1.33 LINK C ASP A 179 N MSE A 180 1555 1555 1.31 LINK C MSE A 180 N LEU A 181 1555 1555 1.32 LINK C HIS A 271 N MSE A 272 1555 1555 1.33 LINK C MSE A 272 N ASN A 273 1555 1555 1.31 CISPEP 1 ASN A 127 PRO A 128 0 -0.53 SITE 1 AC1 11 ALA A 133 TYR A 134 GLY A 135 SER A 136 SITE 2 AC1 11 CYS A 137 ARG A 177 GLU A 206 TYR A 213 SITE 3 AC1 11 TYR A 248 HOH A 328 HOH A 346 CRYST1 38.577 62.131 55.527 90.00 101.69 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025922 0.000000 0.005364 0.00000 SCALE2 0.000000 0.016095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018391 0.00000 HETATM 1 N MSE A 1 -24.738 17.472 -1.904 1.00 35.78 N ANISOU 1 N MSE A 1 4269 4064 4732 -328 -5 56 N HETATM 2 CA MSE A 1 -23.422 16.858 -2.260 1.00 33.43 C ANISOU 2 CA MSE A 1 4185 3748 4572 -476 -63 54 C HETATM 3 C MSE A 1 -22.519 18.056 -2.148 1.00 25.19 C ANISOU 3 C MSE A 1 7909 7302 6521 -506 94 113 C HETATM 4 O MSE A 1 -22.260 18.715 -3.167 1.00 24.80 O ANISOU 4 O MSE A 1 7223 7182 7074 -255 -86 -8 O HETATM 5 CB MSE A 1 -23.436 16.412 -3.684 1.00 32.75 C ANISOU 5 CB MSE A 1 2878 2600 3612 -623 -32 191 C HETATM 6 CG MSE A 1 -22.007 16.149 -4.221 1.00 40.08 C ANISOU 6 CG MSE A 1 2755 2764 3686 -782 -336 -29 C HETATM 7 SE MSE A 1 -21.986 17.040 -5.945 1.00 57.61 SE ANISOU 7 SE MSE A 1 4054 3292 4273 -360 39 65 SE HETATM 8 CE MSE A 1 -23.597 16.127 -6.741 1.00 57.04 C ANISOU 8 CE MSE A 1 4939 4597 5202 -268 146 -23 C