HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-JUL-07 2QIP TITLE CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION VPA0982 FROM VIBRIO TITLE 2 PARAHAEMOLYTICUS RIMD 2210633 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN OF UNKNOWN FUNCTION VPA0982; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633; SOURCE 5 GENE: VPA0982; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS APC85975, VPA0982, VIBRIO PARAHAEMOLYTICUS RIMD 2210633, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,E.DUGGAN,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2QIP 1 VERSN REVDAT 2 24-FEB-09 2QIP 1 VERSN REVDAT 1 24-JUL-07 2QIP 0 JRNL AUTH K.TAN,E.DUGGAN,S.MOY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION, JRNL TITL 2 VPA0982 FROM VIBRIO PARAHAEMOLYTICUS RIMD 2210633. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1594 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2085 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1313 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.833 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1371 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1849 ; 1.360 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 165 ; 5.578 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;35.063 ;24.384 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 233 ;13.539 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.774 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 202 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1049 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 594 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 953 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 835 ; 1.283 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1318 ; 1.938 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 608 ; 4.578 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 529 ; 4.474 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1443 ; 5.039 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 178 ; 4.575 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1349 ; 3.782 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QIP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97927 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31578 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 24.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1M BIS-TRIS, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.10350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.51700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.20900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.10350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.51700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.20900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.10350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.51700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.20900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.10350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.51700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.20900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS EXPERIMENTALLY REMARK 300 UNKNOWN AT THE TIME OF DEPOSITION. FROM MOLECULAR PACKING REMARK 300 IT SEEMS TO FORM A DIMER WITH ITS SYMMETRY-RELATED MOLECULE. REMARK 300 SEE REMARK 350 FOR INFORMATION ON GENERATING THE REMARK 300 BIOLOGICAL MOLECULE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.20700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 75.03400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 354 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 88 O HOH A 478 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 113 147.27 -171.38 REMARK 500 ASP A 157 -158.64 -139.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 90 11.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC85975 RELATED DB: TARGETDB DBREF 2QIP A 1 162 UNP Q9AF14 Q9AF14_VIBPA 1 162 SEQADV 2QIP SER A -2 UNP Q9AF14 CLONING ARTIFACT SEQADV 2QIP ASN A -1 UNP Q9AF14 CLONING ARTIFACT SEQADV 2QIP ALA A 0 UNP Q9AF14 CLONING ARTIFACT SEQADV 2QIP MSE A 1 UNP Q9AF14 MET 1 MODIFIED RESIDUE SEQADV 2QIP MSE A 75 UNP Q9AF14 MET 75 MODIFIED RESIDUE SEQRES 1 A 165 SER ASN ALA MSE GLN SER ASP HIS LYS GLU LYS ILE ALA SEQRES 2 A 165 ILE LEU VAL ASP VAL GLN ASN VAL TYR TYR THR CYS ARG SEQRES 3 A 165 GLU ALA TYR ARG SER ASN PHE ASP TYR ASN GLN PHE TRP SEQRES 4 A 165 TYR VAL ALA THR GLN GLU LYS GLU VAL VAL SER ALA LYS SEQRES 5 A 165 ALA TYR ALA ILE ALA SER ASN ASP PRO LYS GLN ARG GLN SEQRES 6 A 165 PHE HIS HIS ILE LEU ARG GLY VAL GLY PHE GLU VAL MSE SEQRES 7 A 165 LEU LYS PRO TYR ILE GLN ARG ARG ASP GLY SER ALA LYS SEQRES 8 A 165 GLY ASP TRP ASP VAL GLY ILE THR LEU ASP ALA ILE GLU SEQRES 9 A 165 ILE ALA PRO ASP VAL ASP ARG VAL ILE LEU VAL SER GLY SEQRES 10 A 165 ASP GLY ASP PHE SER LEU LEU VAL GLU ARG ILE GLN GLN SEQRES 11 A 165 ARG TYR ASN LYS LYS VAL THR VAL TYR GLY VAL PRO ARG SEQRES 12 A 165 LEU THR SER GLN THR LEU ILE ASP CYS ALA ASP ASN PHE SEQRES 13 A 165 VAL ALA ILE ASP ASP ASP PHE LEU LEU MODRES 2QIP MSE A 1 MET SELENOMETHIONINE MODRES 2QIP MSE A 75 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 75 8 HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 EDO 6(C2 H6 O2) FORMUL 8 HOH *178(H2 O) HELIX 1 1 VAL A 15 ARG A 27 1 13 HELIX 2 2 ASP A 31 THR A 40 1 10 HELIX 3 3 ASP A 57 GLY A 71 1 15 HELIX 4 4 TRP A 91 ALA A 103 1 13 HELIX 5 5 PRO A 104 VAL A 106 5 3 HELIX 6 6 ASP A 115 ASP A 117 5 3 HELIX 7 7 PHE A 118 ASN A 130 1 13 HELIX 8 8 VAL A 138 THR A 142 5 5 HELIX 9 9 SER A 143 ALA A 150 1 8 HELIX 10 10 ASP A 157 LEU A 161 5 5 SHEET 1 A 6 GLU A 73 LEU A 76 0 SHEET 2 A 6 LYS A 43 ALA A 52 1 N ALA A 50 O MSE A 75 SHEET 3 A 6 GLU A 7 ASP A 14 1 N VAL A 13 O TYR A 51 SHEET 4 A 6 ARG A 108 VAL A 112 1 O ILE A 110 N ALA A 10 SHEET 5 A 6 LYS A 132 GLY A 137 1 O THR A 134 N LEU A 111 SHEET 6 A 6 ASN A 152 ALA A 155 1 O VAL A 154 N VAL A 135 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C VAL A 74 N MSE A 75 1555 1555 1.34 LINK C MSE A 75 N LEU A 76 1555 1555 1.34 SITE 1 AC1 7 TYR A 37 LYS A 77 PRO A 78 TYR A 79 SITE 2 AC1 7 ILE A 80 HOH A 383 HOH A 478 SITE 1 AC2 7 LYS A 8 VAL A 106 ASP A 107 GLN A 127 SITE 2 AC2 7 LYS A 131 HOH A 321 HOH A 346 SITE 1 AC3 6 GLU A 101 ARG A 124 GLN A 127 ARG A 128 SITE 2 AC3 6 HOH A 346 HOH A 398 SITE 1 AC4 3 GLU A 123 HOH A 335 HOH A 396 SITE 1 AC5 6 TYR A 79 GLN A 81 ARG A 82 LYS A 88 SITE 2 AC5 6 HOH A 370 HOH A 457 SITE 1 AC6 6 LEU A 76 PRO A 78 ASP A 159 HOH A 329 SITE 2 AC6 6 HOH A 369 HOH A 431 CRYST1 62.207 75.034 80.418 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016075 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012435 0.00000 HETATM 1 N MSE A 1 10.391 28.084 -15.163 1.00 38.89 N ANISOU 1 N MSE A 1 5027 4820 4928 -9 10 -27 N HETATM 2 CA MSE A 1 9.866 26.954 -14.335 1.00 37.69 C ANISOU 2 CA MSE A 1 4890 4669 4759 -23 15 -126 C HETATM 3 C MSE A 1 10.600 26.828 -13.000 1.00 39.66 C ANISOU 3 C MSE A 1 5098 4979 4990 1 -11 -52 C HETATM 4 O MSE A 1 11.739 27.298 -12.851 1.00 39.61 O ANISOU 4 O MSE A 1 5088 4962 4999 -19 -12 -46 O HETATM 5 CB MSE A 1 9.853 25.617 -15.107 1.00 38.28 C ANISOU 5 CB MSE A 1 4940 4768 4834 -18 17 -82 C HETATM 6 CG MSE A 1 10.782 25.533 -16.317 1.00 35.81 C ANISOU 6 CG MSE A 1 4695 4342 4566 -75 -50 -240 C HETATM 7 SE MSE A 1 10.351 24.063 -17.544 0.30 32.20 SE ANISOU 7 SE MSE A 1 4232 3877 4126 -149 7 -176 SE HETATM 8 CE MSE A 1 10.781 22.560 -16.421 1.00 31.24 C ANISOU 8 CE MSE A 1 4068 3887 3912 -87 -76 -200 C