HEADER TRANSFERASE 05-JUL-07 2QIW TITLE CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHOENOLPYRUVATE PHOSPHONOMUTASE TITLE 2 (NCGL1015, CGL1060) FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 AT TITLE 3 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEP PHOSPHONOMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.8.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM ATCC 13032; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 STRAIN: DSM 20300, JCM 1318, LMG 3730, NCIMB 10025; SOURCE 5 GENE: NP_600288.1, CGL1060; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2QIW 1 REMARK SEQADV REVDAT 6 24-JUL-19 2QIW 1 REMARK LINK REVDAT 5 18-OCT-17 2QIW 1 REMARK REVDAT 4 13-JUL-11 2QIW 1 VERSN REVDAT 3 23-MAR-11 2QIW 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2QIW 1 VERSN REVDAT 1 17-JUL-07 2QIW 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PEP PHOSPHONOMUTASE JRNL TITL 2 (NP_600288.1) FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 JRNL TITL 3 KITASATO AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 78697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3957 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5447 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 290 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 522 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.87000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : 1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.233 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3979 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2571 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5424 ; 1.570 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6328 ; 1.005 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 542 ; 5.374 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;35.254 ;25.064 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;11.224 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.297 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 630 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4495 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 739 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 835 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2823 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1979 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1910 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 407 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.296 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2749 ; 2.008 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1067 ; 0.560 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4122 ; 2.511 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1535 ; 4.759 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1285 ; 6.768 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 254 6 REMARK 3 1 B 0 B 254 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 3015 ; 0.430 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 3015 ; 1.750 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2300 31.3730 -30.0910 REMARK 3 T TENSOR REMARK 3 T11: -0.1508 T22: -0.1634 REMARK 3 T33: -0.1764 T12: -0.0036 REMARK 3 T13: 0.0030 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.5856 L22: 1.2034 REMARK 3 L33: 0.5337 L12: -0.4430 REMARK 3 L13: -0.2325 L23: 0.2630 REMARK 3 S TENSOR REMARK 3 S11: -0.0461 S12: -0.0374 S13: -0.0874 REMARK 3 S21: 0.0651 S22: 0.0111 S23: 0.0953 REMARK 3 S31: 0.0795 S32: -0.0146 S33: 0.0350 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): -27.9940 61.1020 -15.5010 REMARK 3 T TENSOR REMARK 3 T11: -0.1589 T22: -0.1470 REMARK 3 T33: -0.1842 T12: 0.0146 REMARK 3 T13: -0.0094 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.9487 L22: 0.8113 REMARK 3 L33: 0.8231 L12: -0.0947 REMARK 3 L13: -0.5301 L23: -0.0095 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: 0.0332 S13: 0.0084 REMARK 3 S21: 0.0175 S22: 0.0057 S23: 0.1151 REMARK 3 S31: -0.0158 S32: -0.0972 S33: 0.0020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. PEG 400 (PG4), HEPES (EPE), SULFATE (SO4), AND GLYCEROL (GOL) REMARK 3 ARE PRESENT IN THE CRYSTALLIZATION CRYO BUFFER, AND HAVE BEEN REMARK 3 MODELED INTO THE STRUCTURE. REMARK 3 5. AN UNKNOWN LIGAND (UNL) HAS BEEN MODELED INTO THE PUTATIVE REMARK 3 ACTIVE SITE ON SUBUNIT A. REMARK 3 6). UNEXPLAINED ELECTRON DENSITIES NEAR HIS 211 IN THE A SUBUNIT, REMARK 3 ARG 136 IN THE A SUBUNIT, AND HIS 211 IN THE B SUBUNIT WERE NOT REMARK 3 MODELED. REMARK 4 REMARK 4 2QIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97901, 0.97935 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 2.0M (NH4)2SO4, 2.0% PEG REMARK 280 400, 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.26000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 72 CE NZ REMARK 470 LYS A 120 CE NZ REMARK 470 LYS A 240 CD CE NZ REMARK 470 LYS B 72 CD CE NZ REMARK 470 LYS B 120 CE NZ REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 100 O HOH A 471 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 87 -122.55 54.36 REMARK 500 SER A 190 -9.17 -140.93 REMARK 500 SER B 56 -156.82 -126.23 REMARK 500 GLU B 87 -123.12 57.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G B 257 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G B 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 260 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375784 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2QIW A 1 254 UNP Q8NRI8 Q8NRI8_CORGL 1 254 DBREF 2QIW B 1 254 UNP Q8NRI8 Q8NRI8_CORGL 1 254 SEQADV 2QIW GLY A 0 UNP Q8NRI8 EXPRESSION TAG SEQADV 2QIW MSE A 1 UNP Q8NRI8 MET 1 MODIFIED RESIDUE SEQADV 2QIW MSE A 62 UNP Q8NRI8 MET 62 MODIFIED RESIDUE SEQADV 2QIW MSE A 68 UNP Q8NRI8 MET 68 MODIFIED RESIDUE SEQADV 2QIW MSE A 166 UNP Q8NRI8 MET 166 MODIFIED RESIDUE SEQADV 2QIW MSE A 176 UNP Q8NRI8 MET 176 MODIFIED RESIDUE SEQADV 2QIW GLY B 0 UNP Q8NRI8 EXPRESSION TAG SEQADV 2QIW MSE B 1 UNP Q8NRI8 MET 1 MODIFIED RESIDUE SEQADV 2QIW MSE B 62 UNP Q8NRI8 MET 62 MODIFIED RESIDUE SEQADV 2QIW MSE B 68 UNP Q8NRI8 MET 68 MODIFIED RESIDUE SEQADV 2QIW MSE B 166 UNP Q8NRI8 MET 166 MODIFIED RESIDUE SEQADV 2QIW MSE B 176 UNP Q8NRI8 MET 176 MODIFIED RESIDUE SEQRES 1 A 255 GLY MSE SER ASP LEU LYS SER LEU ALA THR LYS PHE ALA SEQRES 2 A 255 SER ASP HIS GLU SER GLY LYS LEU LEU VAL LEU PRO THR SEQRES 3 A 255 VAL TRP ASP THR TRP SER ALA GLY LEU VAL GLU GLU ALA SEQRES 4 A 255 GLY PHE SER GLY LEU THR ILE GLY SER HIS PRO VAL ALA SEQRES 5 A 255 ASP ALA THR GLY SER SER ASP GLY GLU ASN MSE ASN PHE SEQRES 6 A 255 ALA ASP TYR MSE ALA VAL VAL LYS LYS ILE THR SER ALA SEQRES 7 A 255 VAL SER ILE PRO VAL SER VAL ASP VAL GLU SER GLY TYR SEQRES 8 A 255 GLY LEU SER PRO ALA ASP LEU ILE ALA GLN ILE LEU GLU SEQRES 9 A 255 ALA GLY ALA VAL GLY ILE ASN VAL GLU ASP VAL VAL HIS SEQRES 10 A 255 SER GLU GLY LYS ARG VAL ARG GLU ALA GLN GLU HIS ALA SEQRES 11 A 255 ASP TYR ILE ALA ALA ALA ARG GLN ALA ALA ASP VAL ALA SEQRES 12 A 255 GLY VAL ASP VAL VAL ILE ASN GLY ARG THR ASP ALA VAL SEQRES 13 A 255 LYS LEU GLY ALA ASP VAL PHE GLU ASP PRO MSE VAL GLU SEQRES 14 A 255 ALA ILE LYS ARG ILE LYS LEU MSE GLU GLN ALA GLY ALA SEQRES 15 A 255 ARG SER VAL TYR PRO VAL GLY LEU SER THR ALA GLU GLN SEQRES 16 A 255 VAL GLU ARG LEU VAL ASP ALA VAL SER VAL PRO VAL ASN SEQRES 17 A 255 ILE THR ALA HIS PRO VAL ASP GLY HIS GLY ALA GLY ASP SEQRES 18 A 255 LEU ALA THR LEU ALA GLY LEU GLY VAL ARG ARG VAL THR SEQRES 19 A 255 PHE GLY PRO LEU TRP GLN LYS TRP LEU ALA ALA THR SER SEQRES 20 A 255 ALA GLN GLN LEU LYS GLY TRP ALA SEQRES 1 B 255 GLY MSE SER ASP LEU LYS SER LEU ALA THR LYS PHE ALA SEQRES 2 B 255 SER ASP HIS GLU SER GLY LYS LEU LEU VAL LEU PRO THR SEQRES 3 B 255 VAL TRP ASP THR TRP SER ALA GLY LEU VAL GLU GLU ALA SEQRES 4 B 255 GLY PHE SER GLY LEU THR ILE GLY SER HIS PRO VAL ALA SEQRES 5 B 255 ASP ALA THR GLY SER SER ASP GLY GLU ASN MSE ASN PHE SEQRES 6 B 255 ALA ASP TYR MSE ALA VAL VAL LYS LYS ILE THR SER ALA SEQRES 7 B 255 VAL SER ILE PRO VAL SER VAL ASP VAL GLU SER GLY TYR SEQRES 8 B 255 GLY LEU SER PRO ALA ASP LEU ILE ALA GLN ILE LEU GLU SEQRES 9 B 255 ALA GLY ALA VAL GLY ILE ASN VAL GLU ASP VAL VAL HIS SEQRES 10 B 255 SER GLU GLY LYS ARG VAL ARG GLU ALA GLN GLU HIS ALA SEQRES 11 B 255 ASP TYR ILE ALA ALA ALA ARG GLN ALA ALA ASP VAL ALA SEQRES 12 B 255 GLY VAL ASP VAL VAL ILE ASN GLY ARG THR ASP ALA VAL SEQRES 13 B 255 LYS LEU GLY ALA ASP VAL PHE GLU ASP PRO MSE VAL GLU SEQRES 14 B 255 ALA ILE LYS ARG ILE LYS LEU MSE GLU GLN ALA GLY ALA SEQRES 15 B 255 ARG SER VAL TYR PRO VAL GLY LEU SER THR ALA GLU GLN SEQRES 16 B 255 VAL GLU ARG LEU VAL ASP ALA VAL SER VAL PRO VAL ASN SEQRES 17 B 255 ILE THR ALA HIS PRO VAL ASP GLY HIS GLY ALA GLY ASP SEQRES 18 B 255 LEU ALA THR LEU ALA GLY LEU GLY VAL ARG ARG VAL THR SEQRES 19 B 255 PHE GLY PRO LEU TRP GLN LYS TRP LEU ALA ALA THR SER SEQRES 20 B 255 ALA GLN GLN LEU LYS GLY TRP ALA MODRES 2QIW MSE A 1 MET SELENOMETHIONINE MODRES 2QIW MSE A 62 MET SELENOMETHIONINE MODRES 2QIW MSE A 68 MET SELENOMETHIONINE MODRES 2QIW MSE A 166 MET SELENOMETHIONINE MODRES 2QIW MSE A 176 MET SELENOMETHIONINE MODRES 2QIW MSE B 1 MET SELENOMETHIONINE MODRES 2QIW MSE B 62 MET SELENOMETHIONINE MODRES 2QIW MSE B 68 MET SELENOMETHIONINE MODRES 2QIW MSE B 166 MET SELENOMETHIONINE MODRES 2QIW MSE B 176 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 62 8 HET MSE A 68 8 HET MSE A 166 8 HET MSE A 176 8 HET MSE B 1 8 HET MSE B 62 8 HET MSE B 68 8 HET MSE B 166 8 HET MSE B 176 8 HET SO4 A 255 5 HET UNL A 256 6 HET GOL A 257 6 HET GOL A 258 6 HET GOL A 259 6 HET GOL A 260 6 HET GOL A 261 6 HET GOL A 262 6 HET GOL A 263 6 HET GOL A 264 6 HET SO4 B 255 5 HET CL B 256 1 HET P6G B 257 14 HET GOL B 258 6 HET GOL B 259 6 HET GOL B 260 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM UNL UNKNOWN LIGAND HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM P6G HEXAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 GOL 11(C3 H8 O3) FORMUL 14 CL CL 1- FORMUL 15 P6G C12 H26 O7 FORMUL 19 HOH *522(H2 O) HELIX 1 1 GLY A 0 SER A 17 1 18 HELIX 2 2 ASP A 28 ALA A 38 1 11 HELIX 3 3 GLY A 46 THR A 54 1 9 HELIX 4 4 ASN A 63 VAL A 78 1 16 HELIX 5 5 SER A 93 ALA A 104 1 12 HELIX 6 6 VAL A 115 GLY A 119 5 5 HELIX 7 7 GLU A 124 GLY A 143 1 20 HELIX 8 8 ASP A 153 GLY A 158 1 6 HELIX 9 9 ASP A 164 GLY A 180 1 17 HELIX 10 10 THR A 191 ASP A 200 1 10 HELIX 11 11 ASP A 220 LEU A 227 1 8 HELIX 12 12 PRO A 236 LYS A 251 1 16 HELIX 13 13 GLY A 252 ALA A 254 5 3 HELIX 14 14 SER B 2 SER B 17 1 16 HELIX 15 15 ASP B 28 ALA B 38 1 11 HELIX 16 16 GLY B 46 THR B 54 1 9 HELIX 17 17 ASN B 63 VAL B 78 1 16 HELIX 18 18 SER B 93 ALA B 104 1 12 HELIX 19 19 VAL B 115 GLY B 119 5 5 HELIX 20 20 GLU B 124 GLY B 143 1 20 HELIX 21 21 ASP B 153 GLY B 158 1 6 HELIX 22 22 ASP B 164 ALA B 179 1 16 HELIX 23 23 THR B 191 ASP B 200 1 10 HELIX 24 24 ASP B 220 GLY B 228 1 9 HELIX 25 25 PRO B 236 LYS B 251 1 16 SHEET 1 A 3 LEU A 21 VAL A 22 0 SHEET 2 A 3 ARG A 231 THR A 233 1 O VAL A 232 N LEU A 21 SHEET 3 A 3 ASN A 207 THR A 209 1 N ILE A 208 O THR A 233 SHEET 1 B 6 THR A 25 VAL A 26 0 SHEET 2 B 6 LEU A 43 ILE A 45 1 O THR A 44 N VAL A 26 SHEET 3 B 6 VAL A 82 ASP A 85 1 O SER A 83 N LEU A 43 SHEET 4 B 6 GLY A 108 VAL A 111 1 O GLY A 108 N VAL A 84 SHEET 5 B 6 VAL A 147 THR A 152 1 O ASN A 149 N ILE A 109 SHEET 6 B 6 SER A 183 PRO A 186 1 O SER A 183 N GLY A 150 SHEET 1 C 3 LEU B 21 VAL B 22 0 SHEET 2 C 3 ARG B 231 THR B 233 1 O VAL B 232 N LEU B 21 SHEET 3 C 3 ASN B 207 THR B 209 1 N ILE B 208 O ARG B 231 SHEET 1 D 6 THR B 25 VAL B 26 0 SHEET 2 D 6 LEU B 43 ILE B 45 1 O THR B 44 N VAL B 26 SHEET 3 D 6 VAL B 82 ASP B 85 1 O SER B 83 N LEU B 43 SHEET 4 D 6 GLY B 108 VAL B 111 1 O GLY B 108 N VAL B 84 SHEET 5 D 6 VAL B 147 THR B 152 1 O ASN B 149 N ILE B 109 SHEET 6 D 6 SER B 183 PRO B 186 1 O TYR B 185 N GLY B 150 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.34 LINK C ASN A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N ASN A 63 1555 1555 1.33 LINK C TYR A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N ALA A 69 1555 1555 1.35 LINK C PRO A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N VAL A 167 1555 1555 1.33 LINK C LEU A 175 N MSE A 176 1555 1555 1.34 LINK C MSE A 176 N GLU A 177 1555 1555 1.32 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C ASN B 61 N MSE B 62 1555 1555 1.34 LINK C MSE B 62 N ASN B 63 1555 1555 1.32 LINK C TYR B 67 N MSE B 68 1555 1555 1.32 LINK C MSE B 68 N ALA B 69 1555 1555 1.34 LINK C PRO B 165 N MSE B 166 1555 1555 1.33 LINK C MSE B 166 N VAL B 167 1555 1555 1.32 LINK C LEU B 175 N MSE B 176 1555 1555 1.34 LINK C MSE B 176 N GLU B 177 1555 1555 1.33 SITE 1 AC1 9 THR A 25 ASN A 110 TYR A 185 THR A 233 SITE 2 AC1 9 GLY A 235 GOL A 264 HOH A 275 HOH A 289 SITE 3 AC1 9 HOH A 340 SITE 1 AC2 10 THR B 25 ASN B 110 TYR B 185 THR B 233 SITE 2 AC2 10 GLY B 235 GOL B 258 HOH B 269 HOH B 272 SITE 3 AC2 10 HOH B 286 HOH B 304 SITE 1 AC3 1 GOL B 258 SITE 1 AC4 5 HIS A 48 ASP A 58 PRO A 236 GOL A 264 SITE 2 AC4 5 HOH A 344 SITE 1 AC5 8 LEU A 221 HOH A 508 VAL B 141 LYS B 251 SITE 2 AC5 8 TRP B 253 HOH B 354 HOH B 469 HOH B 510 SITE 1 AC6 7 GLY A 215 ASP A 220 LEU A 221 HOH A 348 SITE 2 AC6 7 HOH A 375 GLY B 252 TRP B 253 SITE 1 AC7 8 LEU A 20 LEU A 21 VAL A 22 PHE A 40 SITE 2 AC7 8 SER A 41 HOH A 324 HOH A 326 GLY B 143 SITE 1 AC8 7 GLY A 18 LEU A 20 ALA A 225 GLY A 228 SITE 2 AC8 7 VAL A 229 ARG A 230 GLN B 137 SITE 1 AC9 6 LEU A 34 GLU A 37 HOH A 338 ALA B 244 SITE 2 AC9 6 ALA B 247 HOH B 351 SITE 1 BC1 4 ASP A 140 GLY A 143 ASP A 145 HOH A 345 SITE 1 BC2 7 GLY A 0 MSE A 1 SER A 2 HOH A 358 SITE 2 BC2 7 ALA B 125 GLN B 126 LYS B 171 SITE 1 BC3 5 SER A 13 GLU A 16 ASP A 145 ARG A 182 SITE 2 BC3 5 HOH A 487 SITE 1 BC4 8 ARG A 151 LYS A 156 TYR A 185 PRO A 236 SITE 2 BC4 8 SO4 A 255 UNL A 256 HOH A 451 HOH A 513 SITE 1 BC5 9 ARG B 151 LYS B 156 TYR B 185 PRO B 236 SITE 2 BC5 9 SO4 B 255 CL B 256 HOH B 356 HOH B 387 SITE 3 BC5 9 HOH B 457 SITE 1 BC6 4 SER B 2 LEU B 4 LYS B 5 HOH B 521 SITE 1 BC7 5 MSE B 166 GLN B 194 ARG B 197 HOH B 369 SITE 2 BC7 5 HOH B 400 CRYST1 82.520 94.560 107.970 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012118 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009262 0.00000