HEADER HORMONE 06-JUL-07 2QJ4 TITLE A MECHANISTIC BASIS FOR CONVERTING A RECEPTOR TYROSINE KINASE AGONIST TITLE 2 TO AN ANTAGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 31-210; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C57BL/6J; SOURCE 6 GENE: HGF; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ORIGAMI(DE); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-DUET1 KEYWDS HGF/SF, HORMONE/GROWTH FACTOR, HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR W.D.TOLBERT,J.DAUGHERTY,C.-F.GAO,Q.XE,C.MIRANTI,E.GHERARDI,G.VANDE AUTHOR 2 WOUDE,H.E.XU REVDAT 4 20-NOV-24 2QJ4 1 REMARK REVDAT 3 30-AUG-23 2QJ4 1 REMARK SEQADV REVDAT 2 24-FEB-09 2QJ4 1 VERSN REVDAT 1 18-SEP-07 2QJ4 0 JRNL AUTH W.D.TOLBERT,J.DAUGHERTY,C.GAO,Q.XIE,C.MIRANTI,E.GHERARDI, JRNL AUTH 2 G.VANDE WOUDE,H.E.XU JRNL TITL A MECHANISTIC BASIS FOR CONVERTING A RECEPTOR TYROSINE JRNL TITL 2 KINASE AGONIST TO AN ANTAGONIST JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 14592 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17804794 JRNL DOI 10.1073/PNAS.0704290104 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 142016.270 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.8 REMARK 3 NUMBER OF REFLECTIONS : 13356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2039 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 28.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1355 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 44 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.056 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.22000 REMARK 3 B22 (A**2) : 5.22000 REMARK 3 B33 (A**2) : -10.45000 REMARK 3 B12 (A**2) : 12.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM SIGMAA (A) : 0.62 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.55 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.75 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.100 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.370 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.140 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 38.94 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED USING THE LEAST SQUARES REMARK 3 RESIDUAL FOR TWINNING IN CNS WITH A TWIN LAW OF H,-H-K,-L, A REMARK 3 TWIN FRACTION OF 0.433, AND NCS RESTRAINTS BETWEEN CHAIN A AND REMARK 3 CHAIN B. REMARK 4 REMARK 4 2QJ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : SI 1 1 1 REMARK 200 OPTICS : MONOCHROMATOR SI 1 1 1 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13513 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 43.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.6 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 12.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : 0.20000 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1NK1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM AMMONIUM SULFATE, 26-32% PEG REMARK 280 1000, 50 MM TRIS-HCL PH 8.0, AND 5% ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.22500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.22500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.22500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 TYR A 29 REMARK 465 ALA A 30 REMARK 465 GLU A 31 REMARK 465 GLY A 32 REMARK 465 GLN A 33 REMARK 465 LYS A 34 REMARK 465 LYS A 35 REMARK 465 ARG A 36 REMARK 465 ARG A 37 REMARK 465 ASN A 38 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 TYR B 29 REMARK 465 ALA B 30 REMARK 465 GLU B 31 REMARK 465 GLY B 32 REMARK 465 GLN B 33 REMARK 465 LYS B 34 REMARK 465 LYS B 35 REMARK 465 ARG B 36 REMARK 465 ARG B 37 REMARK 465 ASN B 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 169 O HOH B 2001 2.16 REMARK 500 O ILE B 143 O HOH B 2043 2.18 REMARK 500 O HIS A 159 O HOH A 2060 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 71 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 CYS B 71 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 -84.83 -117.98 REMARK 500 GLU A 54 -60.96 173.32 REMARK 500 LEU A 57 -3.11 -58.19 REMARK 500 ASN A 78 55.29 34.30 REMARK 500 ARG A 79 -94.90 -44.58 REMARK 500 SER A 142 38.65 -147.64 REMARK 500 LYS A 145 -31.62 -32.02 REMARK 500 PHE A 163 72.66 -69.96 REMARK 500 SER A 167 -86.54 -88.07 REMARK 500 TYR A 168 69.83 -60.18 REMARK 500 GLU A 175 -125.13 25.76 REMARK 500 GLU A 200 148.50 178.05 REMARK 500 SER A 208 40.78 -101.86 REMARK 500 GLU A 209 -131.32 -10.81 REMARK 500 LYS B 53 -85.29 -118.64 REMARK 500 GLU B 54 -60.84 174.02 REMARK 500 LEU B 57 -3.70 -57.85 REMARK 500 ASN B 78 54.69 34.59 REMARK 500 ARG B 79 -93.17 -43.94 REMARK 500 SER B 142 40.78 -147.93 REMARK 500 LYS B 145 -31.93 -31.90 REMARK 500 PHE B 163 71.36 -68.55 REMARK 500 SER B 167 -86.91 -88.28 REMARK 500 TYR B 168 69.83 -60.04 REMARK 500 GLU B 175 -126.90 25.91 REMARK 500 GLU B 200 149.25 -179.61 REMARK 500 SER B 208 40.08 -102.31 REMARK 500 GLU B 209 -131.25 -10.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NK1 RELATED DB: PDB REMARK 900 HUMAN NK1 STRUCTURE REMARK 900 RELATED ID: 1GP9 RELATED DB: PDB REMARK 900 HUMAN NK1 STRUCTURE REMARK 900 RELATED ID: 1GMN RELATED DB: PDB REMARK 900 HUMAN NK1-HEPARIN COMPLEXES REMARK 900 RELATED ID: 1GMO RELATED DB: PDB REMARK 900 HUMAN NK1-HEPARIN COMPLEXES REMARK 900 RELATED ID: 1BHT RELATED DB: PDB REMARK 900 HUMAN NK1 STRUCTURE REMARK 900 RELATED ID: 2QJ2 RELATED DB: PDB REMARK 900 HUMAN NK1 STRUCTURE REMARK 900 RELATED ID: 2HGF RELATED DB: PDB REMARK 900 HUMAN NMR N-TERMINAL DOMAIN STRUCTURE DBREF 2QJ4 A 29 210 UNP Q08048 HGF_MOUSE 29 210 DBREF 2QJ4 B 29 210 UNP Q08048 HGF_MOUSE 29 210 SEQADV 2QJ4 GLY A 27 UNP Q08048 EXPRESSION TAG SEQADV 2QJ4 SER A 28 UNP Q08048 EXPRESSION TAG SEQADV 2QJ4 GLY B 27 UNP Q08048 EXPRESSION TAG SEQADV 2QJ4 SER B 28 UNP Q08048 EXPRESSION TAG SEQRES 1 A 184 GLY SER TYR ALA GLU GLY GLN LYS LYS ARG ARG ASN THR SEQRES 2 A 184 LEU HIS GLU PHE LYS LYS SER ALA LYS THR THR LEU THR SEQRES 3 A 184 LYS GLU ASP PRO LEU LEU LYS ILE LYS THR LYS LYS VAL SEQRES 4 A 184 ASN SER ALA ASP GLU CYS ALA ASN ARG CYS ILE ARG ASN SEQRES 5 A 184 ARG GLY PHE THR PHE THR CYS LYS ALA PHE VAL PHE ASP SEQRES 6 A 184 LYS SER ARG LYS ARG CYS TYR TRP TYR PRO PHE ASN SER SEQRES 7 A 184 MET SER SER GLY VAL LYS LYS GLY PHE GLY HIS GLU PHE SEQRES 8 A 184 ASP LEU TYR GLU ASN LYS ASP TYR ILE ARG ASN CYS ILE SEQRES 9 A 184 ILE GLY LYS GLY GLY SER TYR LYS GLY THR VAL SER ILE SEQRES 10 A 184 THR LYS SER GLY ILE LYS CYS GLN PRO TRP ASN SER MET SEQRES 11 A 184 ILE PRO HIS GLU HIS SER PHE LEU PRO SER SER TYR ARG SEQRES 12 A 184 GLY LYS ASP LEU GLN GLU ASN TYR CYS ARG ASN PRO ARG SEQRES 13 A 184 GLY GLU GLU GLY GLY PRO TRP CYS PHE THR SER ASN PRO SEQRES 14 A 184 GLU VAL ARG TYR GLU VAL CYS ASP ILE PRO GLN CYS SER SEQRES 15 A 184 GLU VAL SEQRES 1 B 184 GLY SER TYR ALA GLU GLY GLN LYS LYS ARG ARG ASN THR SEQRES 2 B 184 LEU HIS GLU PHE LYS LYS SER ALA LYS THR THR LEU THR SEQRES 3 B 184 LYS GLU ASP PRO LEU LEU LYS ILE LYS THR LYS LYS VAL SEQRES 4 B 184 ASN SER ALA ASP GLU CYS ALA ASN ARG CYS ILE ARG ASN SEQRES 5 B 184 ARG GLY PHE THR PHE THR CYS LYS ALA PHE VAL PHE ASP SEQRES 6 B 184 LYS SER ARG LYS ARG CYS TYR TRP TYR PRO PHE ASN SER SEQRES 7 B 184 MET SER SER GLY VAL LYS LYS GLY PHE GLY HIS GLU PHE SEQRES 8 B 184 ASP LEU TYR GLU ASN LYS ASP TYR ILE ARG ASN CYS ILE SEQRES 9 B 184 ILE GLY LYS GLY GLY SER TYR LYS GLY THR VAL SER ILE SEQRES 10 B 184 THR LYS SER GLY ILE LYS CYS GLN PRO TRP ASN SER MET SEQRES 11 B 184 ILE PRO HIS GLU HIS SER PHE LEU PRO SER SER TYR ARG SEQRES 12 B 184 GLY LYS ASP LEU GLN GLU ASN TYR CYS ARG ASN PRO ARG SEQRES 13 B 184 GLY GLU GLU GLY GLY PRO TRP CYS PHE THR SER ASN PRO SEQRES 14 B 184 GLU VAL ARG TYR GLU VAL CYS ASP ILE PRO GLN CYS SER SEQRES 15 B 184 GLU VAL HET SO4 A3001 5 HET SO4 B3002 5 HET SO4 B3003 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *85(H2 O) HELIX 1 1 THR A 39 HIS A 41 5 3 HELIX 2 2 SER A 67 ILE A 76 1 10 HELIX 3 3 ASP A 124 ILE A 126 5 3 HELIX 4 4 THR B 39 HIS B 41 5 3 HELIX 5 5 SER B 67 ILE B 76 1 10 HELIX 6 6 ASP B 124 ILE B 126 5 3 SHEET 1 A 5 PHE A 43 THR A 52 0 SHEET 2 A 5 LYS A 110 ASN A 122 -1 O LYS A 110 N THR A 52 SHEET 3 A 5 ALA A 87 ASP A 91 -1 N PHE A 88 O TYR A 120 SHEET 4 A 5 ARG A 96 TYR A 100 -1 O ARG A 96 N ASP A 91 SHEET 5 A 5 LYS A 61 LYS A 64 -1 N LYS A 61 O TRP A 99 SHEET 1 B 3 CYS A 150 GLN A 151 0 SHEET 2 B 3 TRP A 189 THR A 192 -1 O PHE A 191 N GLN A 151 SHEET 3 B 3 TYR A 199 VAL A 201 -1 O GLU A 200 N CYS A 190 SHEET 1 C 5 PHE B 43 THR B 52 0 SHEET 2 C 5 LYS B 110 ASN B 122 -1 O LYS B 110 N THR B 52 SHEET 3 C 5 ALA B 87 ASP B 91 -1 N PHE B 88 O TYR B 120 SHEET 4 C 5 ARG B 96 TYR B 100 -1 O ARG B 96 N ASP B 91 SHEET 5 C 5 LYS B 61 LYS B 64 -1 N LYS B 61 O TRP B 99 SHEET 1 D 2 TRP B 189 PHE B 191 0 SHEET 2 D 2 TYR B 199 VAL B 201 -1 O GLU B 200 N CYS B 190 SSBOND 1 CYS A 71 CYS A 97 1555 1555 2.03 SSBOND 2 CYS A 75 CYS A 85 1555 1555 2.05 SSBOND 3 CYS A 129 CYS A 207 1555 1555 2.05 SSBOND 4 CYS A 150 CYS A 190 1555 1555 2.02 SSBOND 5 CYS A 178 CYS A 202 1555 1555 2.03 SSBOND 6 CYS B 71 CYS B 97 1555 1555 2.03 SSBOND 7 CYS B 75 CYS B 85 1555 1555 2.06 SSBOND 8 CYS B 129 CYS B 207 1555 1555 2.04 SSBOND 9 CYS B 150 CYS B 190 1555 1555 2.03 SSBOND 10 CYS B 178 CYS B 202 1555 1555 2.03 CISPEP 1 ILE A 157 PRO A 158 0 0.21 CISPEP 2 ILE B 157 PRO B 158 0 -0.01 SITE 1 AC1 5 LYS A 61 THR A 62 LYS B 64 ARG B 94 SITE 2 AC1 5 ARG B 96 SITE 1 AC2 6 LYS A 64 ARG A 94 ARG A 96 LYS B 61 SITE 2 AC2 6 THR B 62 HOH B2034 SITE 1 AC3 6 LYS A 63 LYS A 64 ARG A 96 LYS B 63 SITE 2 AC3 6 LYS B 64 ARG B 96 CRYST1 86.490 86.490 104.450 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011562 0.006675 0.000000 0.00000 SCALE2 0.000000 0.013351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009574 0.00000