HEADER HYDROLASE 06-JUL-07 2QJ8 TITLE CRYSTAL STRUCTURE OF AN ASPARTOACYLASE FAMILY PROTEIN (MLR6093) FROM TITLE 2 MESORHIZOBIUM LOTI MAFF303099 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MLR6093 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 266835; SOURCE 4 STRAIN: MAFF303099; SOURCE 5 GENE: NP_106651.1, MLR6093; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 30-OCT-24 2QJ8 1 REMARK REVDAT 7 25-JAN-23 2QJ8 1 SEQADV REVDAT 6 24-JUL-19 2QJ8 1 REMARK LINK REVDAT 5 18-OCT-17 2QJ8 1 REMARK REVDAT 4 13-JUL-11 2QJ8 1 VERSN REVDAT 3 23-MAR-11 2QJ8 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2QJ8 1 VERSN REVDAT 1 24-JUL-07 2QJ8 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN MLR6093 JRNL TITL 2 (NP_106651.1) FROM MESORHIZOBIUM LOTI AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2286 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3072 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.57000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 1.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.618 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4779 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3227 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6544 ; 1.786 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7947 ; 1.367 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 650 ; 4.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;31.683 ;23.596 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 801 ;11.336 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;11.075 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 782 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5331 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 910 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 854 ; 0.165 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3335 ; 0.149 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2238 ; 0.160 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 2507 ; 0.082 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 431 ; 0.169 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.075 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.133 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.193 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3231 ; 1.792 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1249 ; 0.663 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5038 ; 2.530 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1795 ; 4.346 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1480 ; 5.896 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 331 4 REMARK 3 1 B 2 B 330 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3168 ; 0.710 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3168 ; 1.380 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 75.1759 58.1777 18.9259 REMARK 3 T TENSOR REMARK 3 T11: -0.0732 T22: -0.1095 REMARK 3 T33: -0.1154 T12: -0.0067 REMARK 3 T13: 0.0067 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.5840 L22: 1.1526 REMARK 3 L33: 0.0660 L12: -0.5899 REMARK 3 L13: 0.2117 L23: 0.1086 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.0071 S13: 0.1081 REMARK 3 S21: 0.0290 S22: 0.0005 S23: 0.1150 REMARK 3 S31: -0.0454 S32: -0.0420 S33: 0.0251 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 330 REMARK 3 ORIGIN FOR THE GROUP (A): 48.5042 37.8733 14.2727 REMARK 3 T TENSOR REMARK 3 T11: 0.0106 T22: -0.0189 REMARK 3 T33: -0.0237 T12: -0.0022 REMARK 3 T13: -0.0471 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 5.0263 L22: 0.0375 REMARK 3 L33: 0.1652 L12: -0.3734 REMARK 3 L13: -0.9071 L23: 0.0713 REMARK 3 S TENSOR REMARK 3 S11: 0.0904 S12: 0.0790 S13: -0.4393 REMARK 3 S21: 0.0279 S22: -0.0698 S23: -0.0017 REMARK 3 S31: 0.0596 S32: 0.0138 S33: -0.0206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. RESIDUES A210-A215, A238-A247, B26-B28, B91-B115, B156-B160, REMARK 3 B183-B188 AND B213-B214 ARE DISORDERED AND HAVE NOT BEEN MODELLED. REMARK 4 REMARK 4 2QJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978662 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL REMARK 200 OPTICS : 1M LONG RH COATED BENT REMARK 200 CYLINDRICAL MIRROR FOR REMARK 200 HORIZONTAL AND VERTICAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45402 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.643 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.78200 REMARK 200 R SYM FOR SHELL (I) : 0.78200 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 20.0% PEG 3350, 0.2M REMARK 280 POTASSIUM CITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.52700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.31600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.31600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.52700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS WHICH FORM A DIMER BASED ON REMARK 300 CRYSTAL PACKING ANALYSIS. SIZE EXCLUSION CHROMATOGRAPHY REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. SEE REMARK 350 FOR INFORMATION REMARK 300 ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 VAL A 210 REMARK 465 VAL A 211 REMARK 465 SER A 212 REMARK 465 ALA A 213 REMARK 465 GLU A 214 REMARK 465 ALA A 215 REMARK 465 GLU A 238 REMARK 465 TYR A 239 REMARK 465 PRO A 240 REMARK 465 THR A 241 REMARK 465 PHE A 242 REMARK 465 ARG A 243 REMARK 465 GLN A 244 REMARK 465 GLN A 245 REMARK 465 LYS A 246 REMARK 465 THR A 247 REMARK 465 GLY B 0 REMARK 465 GLY B 26 REMARK 465 ALA B 27 REMARK 465 ASP B 28 REMARK 465 VAL B 91 REMARK 465 GLN B 92 REMARK 465 ALA B 93 REMARK 465 TRP B 94 REMARK 465 THR B 95 REMARK 465 ARG B 96 REMARK 465 ASN B 97 REMARK 465 THR B 98 REMARK 465 PRO B 99 REMARK 465 ILE B 100 REMARK 465 ASP B 101 REMARK 465 GLY B 102 REMARK 465 LYS B 103 REMARK 465 ASN B 104 REMARK 465 LEU B 105 REMARK 465 ASN B 106 REMARK 465 ARG B 107 REMARK 465 VAL B 108 REMARK 465 PHE B 109 REMARK 465 PRO B 110 REMARK 465 GLY B 111 REMARK 465 ARG B 112 REMARK 465 SER B 113 REMARK 465 ASP B 114 REMARK 465 GLY B 115 REMARK 465 PRO B 156 REMARK 465 ILE B 157 REMARK 465 ALA B 158 REMARK 465 ASP B 159 REMARK 465 ILE B 160 REMARK 465 HIS B 183 REMARK 465 ASN B 184 REMARK 465 GLU B 185 REMARK 465 THR B 186 REMARK 465 ASP B 187 REMARK 465 GLY B 188 REMARK 465 ALA B 213 REMARK 465 GLU B 214 REMARK 465 ARG B 331 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 NZ REMARK 470 GLU A 43 CD OE1 OE2 REMARK 470 LYS A 69 CE NZ REMARK 470 ARG A 76 CD NE CZ NH1 NH2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 LYS A 260 CE NZ REMARK 470 MSE A 289 CE REMARK 470 ARG A 331 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 25 CD CE NZ REMARK 470 GLU B 30 CD OE1 OE2 REMARK 470 HIS B 54 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 73 CD OE1 OE2 REMARK 470 ARG B 196 CD NE CZ NH1 NH2 REMARK 470 LYS B 234 CE NZ REMARK 470 LYS B 246 NZ REMARK 470 LYS B 304 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 185 62.81 -101.67 REMARK 500 MSE A 274 -7.49 83.13 REMARK 500 GLU B 3 145.87 44.49 REMARK 500 ASN B 87 73.28 -118.88 REMARK 500 MSE B 274 -5.05 89.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375129 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 2QJ8 A 1 331 UNP Q98AA0 Q98AA0_RHILO 1 331 DBREF 2QJ8 B 1 331 UNP Q98AA0 Q98AA0_RHILO 1 331 SEQADV 2QJ8 GLY A 0 UNP Q98AA0 EXPRESSION TAG SEQADV 2QJ8 MSE A 1 UNP Q98AA0 MET 1 MODIFIED RESIDUE SEQADV 2QJ8 MSE A 163 UNP Q98AA0 MET 163 MODIFIED RESIDUE SEQADV 2QJ8 MSE A 189 UNP Q98AA0 MET 189 MODIFIED RESIDUE SEQADV 2QJ8 MSE A 274 UNP Q98AA0 MET 274 MODIFIED RESIDUE SEQADV 2QJ8 MSE A 289 UNP Q98AA0 MET 289 MODIFIED RESIDUE SEQADV 2QJ8 MSE A 314 UNP Q98AA0 MET 314 MODIFIED RESIDUE SEQADV 2QJ8 GLY B 0 UNP Q98AA0 EXPRESSION TAG SEQADV 2QJ8 MSE B 1 UNP Q98AA0 MET 1 MODIFIED RESIDUE SEQADV 2QJ8 MSE B 163 UNP Q98AA0 MET 163 MODIFIED RESIDUE SEQADV 2QJ8 MSE B 189 UNP Q98AA0 MET 189 MODIFIED RESIDUE SEQADV 2QJ8 MSE B 274 UNP Q98AA0 MET 274 MODIFIED RESIDUE SEQADV 2QJ8 MSE B 289 UNP Q98AA0 MET 289 MODIFIED RESIDUE SEQADV 2QJ8 MSE B 314 UNP Q98AA0 MET 314 MODIFIED RESIDUE SEQRES 1 A 332 GLY MSE SER GLU ALA PRO HIS LEU THR PHE ASP LEU ASP SEQRES 2 A 332 THR PRO GLY VAL SER THR GLY HIS LEU VAL VAL PRO LYS SEQRES 3 A 332 GLY ALA ASP CYS GLU ALA LEU SER LEU PRO VAL PHE SER SEQRES 4 A 332 CYS ASN ARG GLY GLU GLY PRO SER LEU LEU ILE THR GLY SEQRES 5 A 332 GLY ASN HIS GLY ASN GLU LEU GLN GLY PRO ILE LEU ALA SEQRES 6 A 332 ARG ARG LEU VAL LYS TRP LEU PRO GLU ALA GLN ARG CYS SEQRES 7 A 332 GLY ARG ILE ILE ILE VAL PRO GLU ILE ASN PRO LEU ALA SEQRES 8 A 332 VAL GLN ALA TRP THR ARG ASN THR PRO ILE ASP GLY LYS SEQRES 9 A 332 ASN LEU ASN ARG VAL PHE PRO GLY ARG SER ASP GLY SER SEQRES 10 A 332 VAL SER GLU ARG ILE ALA ASP ALA ILE SER ARG LEU LEU SEQRES 11 A 332 LEU PRO VAL VAL ASP THR VAL LEU ASP LEU HIS SER PHE SEQRES 12 A 332 GLY PRO THR TRP ASP CYS ALA PRO SER ILE ILE SER HIS SEQRES 13 A 332 PRO ILE ALA ASP ILE ASP GLN MSE THR LYS THR VAL SER SEQRES 14 A 332 ILE SER LYS ALA PHE LYS LEU PRO VAL THR LEU LEU TRP SEQRES 15 A 332 GLU HIS ASN GLU THR ASP GLY MSE PHE ASP THR LEU VAL SEQRES 16 A 332 HIS ARG GLN GLY LYS THR PHE ILE CYS THR GLU PHE GLY SEQRES 17 A 332 GLY GLY VAL VAL SER ALA GLU ALA LEU THR ILE TYR GLU SEQRES 18 A 332 ALA GLY VAL ARG ASN GLY LEU ILE ALA LEU GLY LEU VAL SEQRES 19 A 332 LYS GLY LYS ALA GLU TYR PRO THR PHE ARG GLN GLN LYS SEQRES 20 A 332 THR GLY GLN THR LEU GLU THR THR SER SER ASP GLN LEU SEQRES 21 A 332 LYS SER PRO SER PRO GLY ILE PHE GLU PRO ARG CYS SER SEQRES 22 A 332 VAL MSE ASP GLU VAL GLU GLN GLY ASP VAL VAL GLY VAL SEQRES 23 A 332 LEU HIS PRO MSE GLY SER LEU SER ALA ALA SER ILE ASP SEQRES 24 A 332 ILE ARG ALA GLN SER LYS SER THR VAL PHE ALA ILE ARG SEQRES 25 A 332 SER ALA MSE TYR VAL GLN GLY ASN GLU GLU VAL ALA ILE SEQRES 26 A 332 LEU ALA ARG PRO LEU ALA ARG SEQRES 1 B 332 GLY MSE SER GLU ALA PRO HIS LEU THR PHE ASP LEU ASP SEQRES 2 B 332 THR PRO GLY VAL SER THR GLY HIS LEU VAL VAL PRO LYS SEQRES 3 B 332 GLY ALA ASP CYS GLU ALA LEU SER LEU PRO VAL PHE SER SEQRES 4 B 332 CYS ASN ARG GLY GLU GLY PRO SER LEU LEU ILE THR GLY SEQRES 5 B 332 GLY ASN HIS GLY ASN GLU LEU GLN GLY PRO ILE LEU ALA SEQRES 6 B 332 ARG ARG LEU VAL LYS TRP LEU PRO GLU ALA GLN ARG CYS SEQRES 7 B 332 GLY ARG ILE ILE ILE VAL PRO GLU ILE ASN PRO LEU ALA SEQRES 8 B 332 VAL GLN ALA TRP THR ARG ASN THR PRO ILE ASP GLY LYS SEQRES 9 B 332 ASN LEU ASN ARG VAL PHE PRO GLY ARG SER ASP GLY SER SEQRES 10 B 332 VAL SER GLU ARG ILE ALA ASP ALA ILE SER ARG LEU LEU SEQRES 11 B 332 LEU PRO VAL VAL ASP THR VAL LEU ASP LEU HIS SER PHE SEQRES 12 B 332 GLY PRO THR TRP ASP CYS ALA PRO SER ILE ILE SER HIS SEQRES 13 B 332 PRO ILE ALA ASP ILE ASP GLN MSE THR LYS THR VAL SER SEQRES 14 B 332 ILE SER LYS ALA PHE LYS LEU PRO VAL THR LEU LEU TRP SEQRES 15 B 332 GLU HIS ASN GLU THR ASP GLY MSE PHE ASP THR LEU VAL SEQRES 16 B 332 HIS ARG GLN GLY LYS THR PHE ILE CYS THR GLU PHE GLY SEQRES 17 B 332 GLY GLY VAL VAL SER ALA GLU ALA LEU THR ILE TYR GLU SEQRES 18 B 332 ALA GLY VAL ARG ASN GLY LEU ILE ALA LEU GLY LEU VAL SEQRES 19 B 332 LYS GLY LYS ALA GLU TYR PRO THR PHE ARG GLN GLN LYS SEQRES 20 B 332 THR GLY GLN THR LEU GLU THR THR SER SER ASP GLN LEU SEQRES 21 B 332 LYS SER PRO SER PRO GLY ILE PHE GLU PRO ARG CYS SER SEQRES 22 B 332 VAL MSE ASP GLU VAL GLU GLN GLY ASP VAL VAL GLY VAL SEQRES 23 B 332 LEU HIS PRO MSE GLY SER LEU SER ALA ALA SER ILE ASP SEQRES 24 B 332 ILE ARG ALA GLN SER LYS SER THR VAL PHE ALA ILE ARG SEQRES 25 B 332 SER ALA MSE TYR VAL GLN GLY ASN GLU GLU VAL ALA ILE SEQRES 26 B 332 LEU ALA ARG PRO LEU ALA ARG MODRES 2QJ8 MSE A 163 MET SELENOMETHIONINE MODRES 2QJ8 MSE A 189 MET SELENOMETHIONINE MODRES 2QJ8 MSE A 274 MET SELENOMETHIONINE MODRES 2QJ8 MSE A 289 MET SELENOMETHIONINE MODRES 2QJ8 MSE A 314 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 1 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 163 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 189 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 274 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 289 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 314 MET SELENOMETHIONINE HET MSE A 163 13 HET MSE A 189 13 HET MSE A 274 8 HET MSE A 289 11 HET MSE A 314 13 HET MSE B 1 8 HET MSE B 163 8 HET MSE B 189 8 HET MSE B 274 8 HET MSE B 289 13 HET MSE B 314 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 HOH *282(H2 O) HELIX 1 1 LEU A 58 GLN A 75 1 18 HELIX 2 2 ASN A 87 TRP A 94 1 8 HELIX 3 3 SER A 116 LEU A 129 1 14 HELIX 4 4 LEU A 130 VAL A 133 5 4 HELIX 5 5 ASP A 159 ALA A 172 1 14 HELIX 6 6 GLY A 188 VAL A 194 1 7 HELIX 7 7 LEU A 216 LEU A 230 1 15 HELIX 8 8 THR A 254 SER A 256 5 3 HELIX 9 9 LEU B 58 GLN B 75 1 18 HELIX 10 10 SER B 116 LEU B 129 1 14 HELIX 11 11 LEU B 130 VAL B 133 5 4 HELIX 12 12 ASP B 161 PHE B 173 1 13 HELIX 13 13 MSE B 189 ARG B 196 1 8 HELIX 14 14 ALA B 215 GLY B 231 1 17 HELIX 15 15 THR B 254 SER B 256 5 3 SHEET 1 A13 HIS A 6 LEU A 7 0 SHEET 2 A13 GLY A 15 VAL A 23 -1 O VAL A 22 N HIS A 6 SHEET 3 A13 LEU A 32 ARG A 41 -1 O SER A 38 N SER A 17 SHEET 4 A13 GLY A 78 VAL A 83 -1 O GLY A 78 N ARG A 41 SHEET 5 A13 SER A 46 GLY A 51 1 N LEU A 47 O ILE A 81 SHEET 6 A13 THR A 135 GLY A 143 1 O LEU A 139 N THR A 50 SHEET 7 A13 THR A 200 GLY A 207 1 O PHE A 206 N PHE A 142 SHEET 8 A13 SER A 151 SER A 154 -1 N SER A 151 O GLU A 205 SHEET 9 A13 VAL A 177 TRP A 181 1 O LEU A 179 N ILE A 152 SHEET 10 A13 GLN A 249 THR A 253 1 O LEU A 251 N LEU A 180 SHEET 11 A13 GLU A 321 PRO A 328 -1 O ARG A 327 N GLU A 252 SHEET 12 A13 SER A 305 ARG A 311 -1 N ALA A 309 O ILE A 324 SHEET 13 A13 GLN A 258 LYS A 260 0 SHEET 1 B 4 TRP A 146 CYS A 148 0 SHEET 2 B 4 SER A 305 ARG A 311 -1 O ILE A 310 N ASP A 147 SHEET 3 B 4 GLU A 321 PRO A 328 -1 O ILE A 324 N ALA A 309 SHEET 4 B 4 GLU A 276 VAL A 277 0 SHEET 1 C 4 ILE A 297 ARG A 300 0 SHEET 2 C 4 VAL A 282 HIS A 287 -1 N LEU A 286 O ILE A 297 SHEET 3 C 4 GLY A 265 PRO A 269 -1 N ILE A 266 O HIS A 287 SHEET 4 C 4 MSE A 314 VAL A 316 -1 O MSE A 314 N PHE A 267 SHEET 1 D13 HIS B 6 LEU B 7 0 SHEET 2 D13 GLY B 15 VAL B 23 -1 O VAL B 22 N HIS B 6 SHEET 3 D13 LEU B 32 ARG B 41 -1 O ASN B 40 N GLY B 15 SHEET 4 D13 GLY B 78 VAL B 83 -1 O GLY B 78 N ARG B 41 SHEET 5 D13 SER B 46 GLY B 51 1 N ILE B 49 O ILE B 81 SHEET 6 D13 THR B 135 SER B 141 1 O LEU B 139 N THR B 50 SHEET 7 D13 THR B 200 PHE B 206 1 O PHE B 206 N HIS B 140 SHEET 8 D13 SER B 151 SER B 154 -1 N ILE B 153 O CYS B 203 SHEET 9 D13 VAL B 177 TRP B 181 1 O LEU B 179 N ILE B 152 SHEET 10 D13 GLN B 249 THR B 253 1 O GLN B 249 N THR B 178 SHEET 11 D13 GLU B 321 PRO B 328 -1 O ARG B 327 N GLU B 252 SHEET 12 D13 SER B 305 ARG B 311 -1 N THR B 306 O ALA B 326 SHEET 13 D13 GLN B 258 LYS B 260 0 SHEET 1 E 4 TRP B 146 CYS B 148 0 SHEET 2 E 4 SER B 305 ARG B 311 -1 O ILE B 310 N ASP B 147 SHEET 3 E 4 GLU B 321 PRO B 328 -1 O ALA B 326 N THR B 306 SHEET 4 E 4 GLU B 276 VAL B 277 0 SHEET 1 F 4 ILE B 297 ARG B 300 0 SHEET 2 F 4 VAL B 282 HIS B 287 -1 N LEU B 286 O ILE B 297 SHEET 3 F 4 GLY B 265 PRO B 269 -1 N ILE B 266 O HIS B 287 SHEET 4 F 4 MSE B 314 VAL B 316 -1 O VAL B 316 N GLY B 265 LINK C GLN A 162 N MSE A 163 1555 1555 1.34 LINK C MSE A 163 N THR A 164 1555 1555 1.32 LINK C GLY A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N PHE A 190 1555 1555 1.33 LINK C VAL A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N ASP A 275 1555 1555 1.34 LINK C PRO A 288 N MSE A 289 1555 1555 1.34 LINK C MSE A 289 N GLY A 290 1555 1555 1.32 LINK CZ BARG A 311 CE BMSE A 314 1555 1555 1.72 LINK NH2BARG A 311 CE BMSE A 314 1555 1555 1.74 LINK C ALA A 313 N MSE A 314 1555 1555 1.33 LINK C MSE A 314 N TYR A 315 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C GLN B 162 N MSE B 163 1555 1555 1.34 LINK C MSE B 163 N THR B 164 1555 1555 1.34 LINK C MSE B 189 N PHE B 190 1555 1555 1.33 LINK C VAL B 273 N MSE B 274 1555 1555 1.33 LINK C MSE B 274 N ASP B 275 1555 1555 1.34 LINK C PRO B 288 N MSE B 289 1555 1555 1.34 LINK C MSE B 289 N GLY B 290 1555 1555 1.32 LINK C ALA B 313 N MSE B 314 1555 1555 1.34 LINK C MSE B 314 N TYR B 315 1555 1555 1.33 CISPEP 1 PHE A 109 PRO A 110 0 3.60 CRYST1 81.054 86.140 94.632 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010567 0.00000