HEADER HYDROLASE/DNA/RNA 10-JUL-07 2QK9 TITLE HUMAN RNASE H CATALYTIC DOMAIN MUTANT D210N IN COMPLEX WITH 18-MER TITLE 2 RNA/DNA HYBRID COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C) COMPND 3 -3'; COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*GP*CP*AP*CP*T) COMPND 8 -3'; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RIBONUCLEASE H1; COMPND 13 CHAIN: A; COMPND 14 FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 134-286); COMPND 15 SYNONYM: HS-RNASE HC; RNASE H1; RIBONUCLEASE H TYPE II; COMPND 16 EC: 3.1.26.4; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: RNASEH1, RNH1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET15 KEYWDS RNASE H; RNA/DNA HYBRID, HYDROLASE-DNA-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.NOWOTNY,S.A.GAIDAMAKOV,R.GHIRLANDO,S.M.CERRITELLI,R.J.CROUCH,W.YANG REVDAT 7 03-APR-24 2QK9 1 REMARK REVDAT 6 21-FEB-24 2QK9 1 REMARK REVDAT 5 20-OCT-21 2QK9 1 REMARK SEQADV REVDAT 4 13-JUL-11 2QK9 1 VERSN REVDAT 3 24-FEB-09 2QK9 1 VERSN REVDAT 2 27-NOV-07 2QK9 1 REMARK REVDAT 1 13-NOV-07 2QK9 0 JRNL AUTH M.NOWOTNY,S.A.GAIDAMAKOV,R.GHIRLANDO,S.M.CERRITELLI, JRNL AUTH 2 R.J.CROUCH,W.YANG JRNL TITL STRUCTURE OF HUMAN RNASE H1 COMPLEXED WITH AN RNA/DNA JRNL TITL 2 HYBRID: INSIGHT INTO HIV REVERSE TRANSCRIPTION JRNL REF MOL.CELL V. 28 264 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17964265 JRNL DOI 10.1016/J.MOLCEL.2007.08.015 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 21164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2085 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1188 REMARK 3 NUCLEIC ACID ATOMS : 746 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.869 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.418 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.437 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.904 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.908 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE LAST ROUND OF REFINEMENT IN CNS WAS REMARK 3 CARRIED OUT WITH THE PUCKER RESTRAINTS FOR THE DNA STRAND REMOVED REMARK 4 REMARK 4 2QK9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21164 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: ORIGINAL LOW RESOLUTION STRCTURE SOLVED WITH THE REMARK 200 SAME CRYSTAL AND SEMET SIRAS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.1 M NA REMARK 280 CITRATE (PH 5.6) 20MM ATP OR 3% 1,6-DIAMINOHEXANE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 79.28900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.77753 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.35167 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 79.28900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 45.77753 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.35167 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 79.28900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 45.77753 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.35167 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 79.28900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 45.77753 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.35167 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 79.28900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 45.77753 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.35167 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 79.28900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 45.77753 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.35167 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 91.55505 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 94.70333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 91.55505 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 94.70333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 91.55505 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 94.70333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 91.55505 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 94.70333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 91.55505 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 94.70333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 91.55505 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 94.70333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 133 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 134 OG REMARK 470 HIS A 135 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 286 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OA1 FLC A 1001 O HOH A 9021 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 29 O5' - P - OP1 ANGL. DEV. = -7.8 DEGREES REMARK 500 DG C 29 C5' - C4' - O4' ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 135 -89.57 13.99 REMARK 500 MET A 136 103.74 88.18 REMARK 500 ASN A 220 -69.17 -164.17 REMARK 500 ASN A 228 19.66 -143.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A9001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 9 O3' REMARK 620 2 C B 10 OP1 54.2 REMARK 620 3 ASP A 145 OD2 139.1 85.5 REMARK 620 4 GLU A 186 OE1 125.7 145.8 82.4 REMARK 620 5 GLU A 186 OE2 79.0 117.3 120.2 46.8 REMARK 620 6 ASN A 210 ND2 94.0 84.9 88.7 126.5 143.1 REMARK 620 7 HOH A9037 O 138.1 147.2 79.5 60.6 95.4 65.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 16D C 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QKB RELATED DB: PDB REMARK 900 RELATED ID: 2QKK RELATED DB: PDB DBREF 2QK9 A 136 286 UNP O60930 RNH1_HUMAN 136 286 DBREF 2QK9 B 1 18 PDB 2QK9 2QK9 1 18 DBREF 2QK9 C 19 36 PDB 2QK9 2QK9 19 36 SEQADV 2QK9 GLY A 133 UNP O60930 EXPRESSION TAG SEQADV 2QK9 SER A 134 UNP O60930 EXPRESSION TAG SEQADV 2QK9 HIS A 135 UNP O60930 EXPRESSION TAG SEQADV 2QK9 ASN A 210 UNP O60930 ASP 210 ENGINEERED MUTATION SEQRES 1 B 18 A G U G C G A C A C C U G SEQRES 2 B 18 A U U C C SEQRES 1 C 18 DG DG DA DA DT DC DA DG DG DT DG DT DC SEQRES 2 C 18 DG DC DA DC DT SEQRES 1 A 154 GLY SER HIS MET GLY ASP PHE VAL VAL VAL TYR THR ASP SEQRES 2 A 154 GLY CYS CYS SER SER ASN GLY ARG ARG ARG PRO ARG ALA SEQRES 3 A 154 GLY ILE GLY VAL TYR TRP GLY PRO GLY HIS PRO LEU ASN SEQRES 4 A 154 VAL GLY ILE ARG LEU PRO GLY ARG GLN THR ASN GLN ARG SEQRES 5 A 154 ALA GLU ILE HIS ALA ALA CYS LYS ALA ILE GLU GLN ALA SEQRES 6 A 154 LYS THR GLN ASN ILE ASN LYS LEU VAL LEU TYR THR ASN SEQRES 7 A 154 SER MET PHE THR ILE ASN GLY ILE THR ASN TRP VAL GLN SEQRES 8 A 154 GLY TRP LYS LYS ASN GLY TRP LYS THR SER ALA GLY LYS SEQRES 9 A 154 GLU VAL ILE ASN LYS GLU ASP PHE VAL ALA LEU GLU ARG SEQRES 10 A 154 LEU THR GLN GLY MET ASP ILE GLN TRP MET HIS VAL PRO SEQRES 11 A 154 GLY HIS SER GLY PHE ILE GLY ASN GLU GLU ALA ASP ARG SEQRES 12 A 154 LEU ALA ARG GLU GLY ALA LYS GLN SER GLU ASP HET SO4 B1007 5 HET SO4 B1008 5 HET SO4 C1009 5 HET 16D C1004 8 HET NA A9001 1 HET FLC A1001 13 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 A1010 5 HET SO4 A1011 5 HET GOL A1002 6 HET GOL A1003 6 HETNAM SO4 SULFATE ION HETNAM 16D HEXANE-1,6-DIAMINE HETNAM NA SODIUM ION HETNAM FLC CITRATE ANION HETNAM GOL GLYCEROL HETSYN 16D 1,6-DIAMINOHEXANE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 SO4 7(O4 S 2-) FORMUL 7 16D C6 H16 N2 FORMUL 8 NA NA 1+ FORMUL 9 FLC C6 H5 O7 3- FORMUL 14 GOL 2(C3 H8 O3) FORMUL 16 HOH *109(H2 O) HELIX 1 1 THR A 181 GLN A 200 1 20 HELIX 2 2 SER A 211 ASN A 220 1 10 HELIX 3 3 ASN A 220 LYS A 227 1 8 HELIX 4 4 ASN A 240 GLN A 252 1 13 HELIX 5 5 PHE A 267 ALA A 281 1 15 SHEET 1 A 5 VAL A 172 ARG A 175 0 SHEET 2 A 5 ARG A 157 TYR A 163 -1 N ILE A 160 O ILE A 174 SHEET 3 A 5 VAL A 140 SER A 149 -1 N SER A 149 O ARG A 157 SHEET 4 A 5 LYS A 204 THR A 209 1 O TYR A 208 N VAL A 142 SHEET 5 A 5 ASP A 255 HIS A 260 1 O MET A 259 N LEU A 207 LINK O3' A B 9 NA NA A9001 1555 1555 2.86 LINK OP1 C B 10 NA NA A9001 1555 1555 2.48 LINK OD2 ASP A 145 NA NA A9001 1555 1555 2.38 LINK OE1 GLU A 186 NA NA A9001 1555 1555 2.93 LINK OE2 GLU A 186 NA NA A9001 1555 1555 2.54 LINK ND2 ASN A 210 NA NA A9001 1555 1555 2.55 LINK NA NA A9001 O HOH A9037 1555 1555 2.88 SITE 1 AC2 3 C B 8 A B 9 16D C1004 SITE 1 AC3 3 G B 13 A B 14 DA C 25 SITE 1 AC4 2 DT C 30 DC C 31 SITE 1 AC5 6 ASP A 145 GLU A 186 ASN A 210 HOH A9037 SITE 2 AC5 6 A B 9 C B 10 SITE 1 AC6 13 VAL A 140 TRP A 164 HIS A 168 GLY A 173 SITE 2 AC6 13 GLN A 200 ILE A 202 GLN A 283 HOH A9014 SITE 3 AC6 13 HOH A9018 HOH A9021 HOH A9038 HOH A9041 SITE 4 AC6 13 HOH A9045 SITE 1 AC7 4 ARG A 157 ARG A 175 SER A 284 GLU A 285 SITE 1 AC8 4 HIS A 264 HOH A9054 C B 10 C B 11 SITE 1 AC9 3 ARG A 153 DG C 26 DG C 27 SITE 1 AD1 3 ARG A 153 ARG A 154 HOH A9058 SITE 1 BC1 7 A B 7 SO4 B1007 HOH B1027 DT C 28 SITE 2 BC1 7 DG C 29 DT C 30 HOH C1033 SITE 1 BC2 6 ARG A 179 ARG A 184 ILE A 239 ASN A 240 SITE 2 BC2 6 GLU A 242 ASP A 243 SITE 1 BC3 3 HIS A 188 CYS A 191 GLU A 195 CRYST1 158.578 158.578 142.055 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006306 0.003641 0.000000 0.00000 SCALE2 0.000000 0.007282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007040 0.00000